BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32180.1
Length=2940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473399 jgi|Araly1|473399|fgenesh2_kg.1__3353__AT1G32180.1 4290 0.0
> Ahg473399 jgi|Araly1|473399|fgenesh2_kg.1__3353__AT1G32180.1
Length=2925
Score = 4290 bits (2323), Expect = 0.0
Identities = 2752/2955 (93%), Gaps = 45/2955 (2%)
Strand=Plus/Plus
Query 1 ATGATGGACGGAGAATCTCCTCTAAGACATCCCAGAATCAGCCACGTATCAAATTCCGGC 60
|||||| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 1 ATGATGTACGGAGAATCTCCTATAAGACTTCCCAGAATCAGCCACGTGTCAAATTCCGGC 60
Query 61 AGCGATTTCGGAAGCAGCTCTGATTACAACAAG-TACCTCGTCCAGATCCCTCCGACGCC 119
|| ||||||||| ||||||| ||| || || || ||| ||||||| ||||||||||||||
Sbjct 61 AGTGATTTCGGATGCAGCTCCGATCAC-ACCAGTTACATCGTCCATATCCCTCCGACGCC 119
Query 120 GGACAACAATCCCGGTCCGGCGTCGCTTTCAATCGTTCTCCTGGAAATCGATTCCAATCA 179
|||||||||| |||| | || | ||||||||||||||| |||| |||||| |||||
Sbjct 120 GGACAACAAT-CCGG--C-GC--AGGTTTCAATCGTTCTCCGGGAATTCGATTTCAATCC 173
Query 180 GG----AG-TC-GGTTCCGTCCGTTTCCGGAGACATCGTTTCCGGCTCATCTGGTAAAGA 233
|| | || |||||| |||| | |||| ||||||| |||||| |||||| | |||||
Sbjct 174 GGCCTCGGTTCTGGTTCCATCCGCTCCCGGGGACATCGATTCCGGTTCATCTAGAAAAGA 233
Query 234 CAACGAACCGGATCTAACCGATGTGAGAATCAACGTAGGTGAAGAAGAAGAAGACGATAC 293
||||||||||||||||||||||||||||||| | || | |||||||||||||| |||||
Sbjct 234 CAACGAACCGGATCTAACCGATGTGAGAATC-A-GT-GAAGAAGAAGAAGAAGATGATAC 290
Query 294 CTTGCTTTCCAAGATATCTTATTCTCTTACTCGTGTCGTCAAAATCTCTCCGATCATCAT 353
|||||||| |||||||||| || |||| |||||| |||||||||||||||||||||||||
Sbjct 291 CTTGCTTTACAAGATATCTCATCCTCTAACTCGTATCGTCAAAATCTCTCCGATCATCAT 350
Query 354 CGCTCTTTATCGGATTCTAATAGTTGTTCGAGTAGTATCTCTAGCTCTGTTTCTCTTCTG 413
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 351 CGCTCTTTATCGGATTCTGATAGTTGTTCGAGTAGTATCTCTTGTTCTGTTTCTCTTCTG 410
Query 414 GAGAATCAGAAACCCAAACAACAAAGCATTATGGTTATGGTTACTCTCTGTAATCTGTGA 473
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 411 GAGAATCAGAAACCCAAACAATAAAGCAATATGGTTATGGTTACTCTCTGTAATCTGTGA 470
Query 474 ACTCTGGTTTGCTTTCTCTTGGTTACTTGACCAAATCCCTAAGTTGTTTCCTGTGAACCA 533
| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 471 AATCTGGTTTGCTTTCTCTTGGTTACTCGACCAAATCCCTAAGTTGTTTCCTGTTAACCA 530
Query 534 CGCAACCGATATCGAAGCCTTAAAGGCGACATTCGAAACGCCAAACCCGGATAACCCGAC 593
|||||||||||| |||||||||||||||||||||||| | ||| ||||| |||||| |||
Sbjct 531 CGCAACCGATATTGAAGCCTTAAAGGCGACATTCGAATCACCAGACCCGAATAACCTGAC 590
Query 594 CGGGAAATCAGATCTTCCGGGGATTGATGTGTTTGTTTCAACGGCTGATGCAGAGAAAGA 653
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CGTGAAATCAGATCTTCCGGGGATTGATGTGTTTGTTTCAACGGCTGATGCAGAGAAAGA 650
Query 654 GCCTCCATTAGTTACAGCCAACACAATTCTTTCGATTTTATCTGTTGATTATCCTGTTGA 713
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 651 GCCTCCATTAGTCACAGCCAATACAATTCTTTCGATTTTATCGGTTGATTATCCTGTTGA 710
Query 714 GAAGCTCTC-TGTTTATATCTCAGATGATGGAGGATCGCTTGTTACGTTTGAAGCAATTG 772
||||||||| || |||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 711 GAAGCTCTCTTG-TTATATCTCAGATGATGGCGGATCGCTTGTTACATTTGAAGCAATGG 769
Query 773 CTGAAGCGGCTAGCTTTGCGAAAATATGGGTTCCGTTTTGCAGGAAACATAAGATAGAGC 832
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 770 CTGAAGCGGCTAGCTTTGCCAAAATATGGGTTCCGTTTTGCAGGAAACATAGGATCGAGC 829
Query 833 CGAGGAATCCGGAGAGTTACTTTGGTTTGAAGAGGGATCCTTATAAGGATAAGGTGAGAC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CGAGGAATCCGGAGAGTTACTTTGGTTTGAAGAGGGATCCTTATAAGGATAAGGTGAGAC 889
Query 893 ATGATTTTGTTCGAGAGCGACGGTATGTTAAACGAGCTTATGATGAGTTTAAGGTTCGGG 952
|||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||
Sbjct 890 ATGATTTTGTTCGAGAGCGACGGTATGTGAAACGAGGTTATGAGGAGTTTAAAGTTCGGG 949
Query 953 TTAATGCGCTGCCTCATTCGATAAGAAGGAGATCGGATGCGTTTAATAGCAAAGAAGAGA 1012
|||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 950 TTAACGCGCTGCCTCATTCGATTAGAAGGAGATCGGATGCGTATAATAGCAAAGAAGAGA 1009
Query 1013 TTAAAGCTTTAGAGAAATGGAAGCATTGGAAGGTGAAAGTTGAAGAGGATCAAATTAAGG 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1010 TTAAAGCTTTAGAGAAATGGAAGCATTGGAAGGTGAAAGTTGAAGAGGATCAAGTTAAGG 1069
Query 1073 AACCAAGGCCTGCTTTAGTAGCTCCTAAAGCTACTTGGATGAGTGATGGAACTCATTGGC 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AACCAAGGCCTGCTTTAGTAGCTCCTAAAGCTACTTGGATGAGTGATGGAACTCATTGGC 1129
Query 1133 CCGGTACTTGGGCTGTCTCTGGACCGCACCATTCGAGAGGCGATCACGCTAGTGTTATAC 1192
||||||||||||||||| || | ||||||||||||||||||||||||| |||| ||||||
Sbjct 1130 CCGGTACTTGGGCTGTCCCTTGTCCGCACCATTCGAGAGGCGATCACGTTAGTATTATAC 1189
Query 1193 AGGTGTTGCTTGATCCTCCTGGTGATGAACCGGTGGAAGGGAAAGGCGGTGAGGGGCGCG 1252
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1190 AGGTGTTGCTTGATCCTCCCGGAGATGAACCGGTTGAAGGGAAAGGCGGTGAGGGGCGCG 1249
Query 1253 CACTGGATCTTGAAGGAGTAGACATTCGTTTACCAATGCTTGTTTACGTGAGCCGCGAGA 1312
| |||||| |||||||||||||||| || ||||| |||||||||||||||||||| ||||
Sbjct 1250 CGCTGGATTTTGAAGGAGTAGACATGCGATTACCTATGCTTGTTTACGTGAGCCGTGAGA 1309
Query 1313 AACGTCCTGGTTATGACCATAACAAGAAGGCAGGAGCTATGAACGCTTTGGTCAGAGCCT 1372
|||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1310 AACGGCCTGGTTATGACCATAATAAGAAGGCAGGAGCTATGAACGCTTTGGTCCGAGCCT 1369
Query 1373 CGGCTATAATGTCTAATGGACCGTTCATCTTGAACTTGGACTGTGACCACTATGTCTATA 1432
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1370 CGGCTATAATGTCTAATGGACCGTTCATCTTGAACTTGGATTGTGACCACTATGTCTATA 1429
Query 1433 ACTCAAGAGCTTTTAGAGATGGGATCTGTTTCATGATGGACCATGACGGCGACCGTGTTT 1492
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1430 ACTCTAGAGCTTTTAGAGATGGGATCTGTTTCATGATGGACCATGACGGCGACCATGTTT 1489
Query 1493 CCTATGTTCAGTTTCCGCAGAGGTTTGAAGGAATTGATCCATCTGATCGCTATGCTAACA 1552
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1490 CCTATGTTCAGTTTCCGCAGAGGTTTGAAGGAATTGATCCGTCTGACCGCTATGCTAACA 1549
Query 1553 AGAATACTGTTTTCTTCGACATTAATCTGCGAGCTCTCGATGGGATCCAAGGTCCAATGT 1612
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1550 ACAATACTGTTTTTTTCGACATTAATCTGCGGGCTCTCGATGGGATCCAAGGTCCGATGT 1609
Query 1613 ATGTTGGGACGGGGTGTCTCTTCCGTCGAACCGCGCTTTACGGTTTCAACCCGCCTGATG 1672
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1610 ATGTTGGGACGGGGTGTCTCTTCCGTCGAACCGCACTTTACGGTTTCAACCCGCCTGATG 1669
Query 1673 TTTTTGTGGTTGAGGAAGAACCTTCTGGTTCCTACTGTTTCCCGCTGATCAAGAAACGCA 1732
|||||||||| | | | | | |||||||||| | ||||||||||||||
Sbjct 1670 TTTTTGTGGT-G-G-A-G--------G------ACTGTTTCCCACGGATCAAGAAACGCA 1711
Query 1733 GTCCTGCAACCGTAGCTTCTGAACCAGAGTACTACACTGACGAGGAGGAT-A-G---G-T 1786
||| ||||||||||||||||||||||||| |||||| |||||| |||||| | | | |
Sbjct 1712 GTCGTGCAACCGTAGCTTCTGAACCAGAGCACTACATTGACGATGAGGATGAAGATCGCT 1771
Query 1787 TTGATATTGGTTTGATTCGGAAGCAATTCGGTAGCTCGAGTATGCTAGTGAATTCGGTAA 1846
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1772 TTGATATTGGTTTGATTCGGAAGCAATTCGGTAGCTCGAGTATGCTAGTGAGTTCGGTAA 1831
Query 1847 AGGTGGCAGAGTTTGAAGGTAGACCACTAGCTACAGTTCACTCAAGCCGGC-TAGGACGC 1905
|||| ||||||||| ||||||| ||||||||||||||| |||||||||||| | ||||||
Sbjct 1832 AGGTCGCAGAGTTTCAAGGTAGGCCACTAGCTACAGTTTACTCAAGCCGGCGT-GGACGC 1890
Query 1906 CCACCTGGCTCTTTGACTGGAAGCCGCAAACCGCTTGATTTCGCGACTGTGAATGAGGCG 1965
|| |||||||||||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 1891 CCTCCTGGCTCTTTGACTGGAAGCCGCGAACCGCTTGATTTCGCGACTGTAAACGAGGCT 1950
Query 1966 GTTAACGTGATCTCGTGCTGGTATGAAGACAAGACTGAATGGGGGTTCAACGTTGGATGG 2025
|||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1951 GTTAACGTGATCTCATGCTGGTACGAAGACAAGACGGAATGGGGATTCAACGTTGGATGG 2010
Query 2026 ATATATGGTTCTGTAACCGAAGACGTAGTGACTGGTTTTCGAATGCATGAAAAAGGATGG 2085
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2011 ATATATGGTTCCGTAACTGAAGACGTAGTGACCGGTTTTCGAATGCATGAAAAAGGATGG 2070
Query 2086 AGATCATTCTACTGCGTGACAGAGCCAGACGCATTCCGTGGAAGCGCACCTATAAACCTA 2145
||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||
Sbjct 2071 AGATCATTCTACTGCGTAACAGAGCCAGACGCATTCCGCGGAACCGCACCGATAAACCTA 2130
Query 2146 ACTGATCGACTCCACCAGGTTCTCCGATGGGCTACGGGATCAGTAGAGATCTTCTTCTCT 2205
|||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2131 ACTGATCGGCTCCACCAGGTTCTCCGATGGGCCACCGGATCAGTAGAGATCTTCTTCTCC 2190
Query 2206 CGAAACAACGCCATTTTCGCCGGTCCAAAACTCAAACTCCTCCAGAGAATCGCTTACCTC 2265
|||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 2191 CGAAACAACGCCATATTCGCCGGTCCAAAACTCAAATTGCTCCAGAGGATCGCTTACCTA 2250
Query 2266 AATGTTGGAATCTACCCATTCACCAGCATTTTCATCTTAACCTACTGCTTCCTCCCGCCG 2325
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2251 AACGTCGGAATCTACCCATTCACAAGCATTTTCATCTTAACCTACTGCTTCCTCCCGCCG 2310
Query 2326 TTATCTCTCTTCTCCGGTCACTTCGTTGTTGAAACCCTCACTGGATCATTCCTCATTTAC 2385
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2311 TTATCTCTCTTCTCCGGTCACTTCGTTGTTGAAACCCTCACCGGATCATTCCTCATTTAC 2370
Query 2386 CTTTTGATTATCACATTGTCTCTCTGTGGATTAGCTGTTCTTGAAGTCAAATGGTCAGGT 2445
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2371 CTTTTGATAATCACATTGTCTCTCTGTGGATTAGCTGTTCTTGAAGTCAAATGGTCAGGT 2430
Query 2446 ATCTCATTAGAAGAATGGTGGAGAAACGAGCAGTTCTGGTTAATCGGTGGCACGAGCGCA 2505
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2431 ATCTCATTAGAAGAATGGTGGAGAAACGAGCAGTTCTGGTTAATAGGCGGCACGAGCGCA 2490
Query 2506 CATTTAGTCGCTGTACTACAAGGTATACTCAAAGTCATAGCCGGAGTCGAAATCTCCTTC 2565
||||||||||| ||||| ||||||||||||||||| || |||||| |||||||||| |||
Sbjct 2491 CATTTAGTCGCGGTACTTCAAGGTATACTCAAAGTTATCGCCGGAATCGAAATCTCATTC 2550
Query 2566 ACCTTGACTTCAAAATCTTCAACAGGAGGAGATGATGAAGACGACGAGTTCGCTGATCTT 2625
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2551 ACCTTGACTGCAAAATCTTCAACAGGAGGAGATGACGAAGACGACGAGTTCGCTGATCTT 2610
Query 2626 TATCTGTTTAAATGGACTGCTCTGATGATTCCACCGTTAACAATCATAATCTTGAACATC 2685
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2611 TATCTCTTTAAATGGACTGCTCTGATGATTCCACCGTTAACAATCATAATCTTGAACATC 2670
Query 2686 GTAGCGATACTTTTCGCGGTTTGTAGGACGGTTTTCAGTGCGAATCCACAGTGGAGCAAT 2745
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 2671 GTAGCGATACTTTTCGCGGTTTGTAGGACGGTTTTCAGCGAGAATCCACAGTGGAGTAAT 2730
Query 2746 CTTCTTGGAGGGACATTCTTTGCCAGTTGGGTTTTGCTTCATATGTATCCGTTTGCCAAA 2805
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2731 CTTCTTGGAGGGACATTCTTTGCCAGTTGGGTTTTGCTTCATATGTATCCGTTTGCGAAA 2790
Query 2806 GGTTTAATGGGAAGAGGAGGAAAAACACCGACAGTTGTGTATGTTTGGTCGGGACTTATT 2865
||||| |||||||||||||||| |||||||||| |||||||||||||||| ||||||||
Sbjct 2791 GGTTTGATGGGAAGAGGAGGAAGAACACCGACAATTGTGTATGTTTGGTCAGGACTTATC 2850
Query 2866 GCTATTTGCTTGTCTCTTCTCTACATTACCATTAAGAATTCGGAGATTGATGGAGGATCG 2925
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 2851 GCTATTTGCTTATCTCTTCTCTATATTACCATTAAGAATTCGGAGATTGATGGAGGATGG 2910
Query 2926 TTTATGTTGGTTTAG 2940
|||||||||| ||||
Sbjct 2911 TTTATGTTGGCTTAG 2925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110994973930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5