BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32180.1 Length=2940 Score E Sequences producing significant alignments: (Bits) Value Ahg473399 jgi|Araly1|473399|fgenesh2_kg.1__3353__AT1G32180.1 4290 0.0 > Ahg473399 jgi|Araly1|473399|fgenesh2_kg.1__3353__AT1G32180.1 Length=2925 Score = 4290 bits (2323), Expect = 0.0 Identities = 2752/2955 (93%), Gaps = 45/2955 (2%) Strand=Plus/Plus Query 1 ATGATGGACGGAGAATCTCCTCTAAGACATCCCAGAATCAGCCACGTATCAAATTCCGGC 60 |||||| |||||||||||||| |||||| |||||||||||||||||| |||||||||||| Sbjct 1 ATGATGTACGGAGAATCTCCTATAAGACTTCCCAGAATCAGCCACGTGTCAAATTCCGGC 60 Query 61 AGCGATTTCGGAAGCAGCTCTGATTACAACAAG-TACCTCGTCCAGATCCCTCCGACGCC 119 || ||||||||| ||||||| ||| || || || ||| ||||||| |||||||||||||| Sbjct 61 AGTGATTTCGGATGCAGCTCCGATCAC-ACCAGTTACATCGTCCATATCCCTCCGACGCC 119 Query 120 GGACAACAATCCCGGTCCGGCGTCGCTTTCAATCGTTCTCCTGGAAATCGATTCCAATCA 179 |||||||||| |||| | || | ||||||||||||||| |||| |||||| ||||| Sbjct 120 GGACAACAAT-CCGG--C-GC--AGGTTTCAATCGTTCTCCGGGAATTCGATTTCAATCC 173 Query 180 GG----AG-TC-GGTTCCGTCCGTTTCCGGAGACATCGTTTCCGGCTCATCTGGTAAAGA 233 || | || |||||| |||| | |||| ||||||| |||||| |||||| | ||||| Sbjct 174 GGCCTCGGTTCTGGTTCCATCCGCTCCCGGGGACATCGATTCCGGTTCATCTAGAAAAGA 233 Query 234 CAACGAACCGGATCTAACCGATGTGAGAATCAACGTAGGTGAAGAAGAAGAAGACGATAC 293 ||||||||||||||||||||||||||||||| | || | |||||||||||||| ||||| Sbjct 234 CAACGAACCGGATCTAACCGATGTGAGAATC-A-GT-GAAGAAGAAGAAGAAGATGATAC 290 Query 294 CTTGCTTTCCAAGATATCTTATTCTCTTACTCGTGTCGTCAAAATCTCTCCGATCATCAT 353 |||||||| |||||||||| || |||| |||||| ||||||||||||||||||||||||| Sbjct 291 CTTGCTTTACAAGATATCTCATCCTCTAACTCGTATCGTCAAAATCTCTCCGATCATCAT 350 Query 354 CGCTCTTTATCGGATTCTAATAGTTGTTCGAGTAGTATCTCTAGCTCTGTTTCTCTTCTG 413 |||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| Sbjct 351 CGCTCTTTATCGGATTCTGATAGTTGTTCGAGTAGTATCTCTTGTTCTGTTTCTCTTCTG 410 Query 414 GAGAATCAGAAACCCAAACAACAAAGCATTATGGTTATGGTTACTCTCTGTAATCTGTGA 473 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 411 GAGAATCAGAAACCCAAACAATAAAGCAATATGGTTATGGTTACTCTCTGTAATCTGTGA 470 Query 474 ACTCTGGTTTGCTTTCTCTTGGTTACTTGACCAAATCCCTAAGTTGTTTCCTGTGAACCA 533 | ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 471 AATCTGGTTTGCTTTCTCTTGGTTACTCGACCAAATCCCTAAGTTGTTTCCTGTTAACCA 530 Query 534 CGCAACCGATATCGAAGCCTTAAAGGCGACATTCGAAACGCCAAACCCGGATAACCCGAC 593 |||||||||||| |||||||||||||||||||||||| | ||| ||||| |||||| ||| Sbjct 531 CGCAACCGATATTGAAGCCTTAAAGGCGACATTCGAATCACCAGACCCGAATAACCTGAC 590 Query 594 CGGGAAATCAGATCTTCCGGGGATTGATGTGTTTGTTTCAACGGCTGATGCAGAGAAAGA 653 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 CGTGAAATCAGATCTTCCGGGGATTGATGTGTTTGTTTCAACGGCTGATGCAGAGAAAGA 650 Query 654 GCCTCCATTAGTTACAGCCAACACAATTCTTTCGATTTTATCTGTTGATTATCCTGTTGA 713 |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 651 GCCTCCATTAGTCACAGCCAATACAATTCTTTCGATTTTATCGGTTGATTATCCTGTTGA 710 Query 714 GAAGCTCTC-TGTTTATATCTCAGATGATGGAGGATCGCTTGTTACGTTTGAAGCAATTG 772 ||||||||| || |||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 711 GAAGCTCTCTTG-TTATATCTCAGATGATGGCGGATCGCTTGTTACATTTGAAGCAATGG 769 Query 773 CTGAAGCGGCTAGCTTTGCGAAAATATGGGTTCCGTTTTGCAGGAAACATAAGATAGAGC 832 ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| Sbjct 770 CTGAAGCGGCTAGCTTTGCCAAAATATGGGTTCCGTTTTGCAGGAAACATAGGATCGAGC 829 Query 833 CGAGGAATCCGGAGAGTTACTTTGGTTTGAAGAGGGATCCTTATAAGGATAAGGTGAGAC 892 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 CGAGGAATCCGGAGAGTTACTTTGGTTTGAAGAGGGATCCTTATAAGGATAAGGTGAGAC 889 Query 893 ATGATTTTGTTCGAGAGCGACGGTATGTTAAACGAGCTTATGATGAGTTTAAGGTTCGGG 952 |||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||| Sbjct 890 ATGATTTTGTTCGAGAGCGACGGTATGTGAAACGAGGTTATGAGGAGTTTAAAGTTCGGG 949 Query 953 TTAATGCGCTGCCTCATTCGATAAGAAGGAGATCGGATGCGTTTAATAGCAAAGAAGAGA 1012 |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 950 TTAACGCGCTGCCTCATTCGATTAGAAGGAGATCGGATGCGTATAATAGCAAAGAAGAGA 1009 Query 1013 TTAAAGCTTTAGAGAAATGGAAGCATTGGAAGGTGAAAGTTGAAGAGGATCAAATTAAGG 1072 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1010 TTAAAGCTTTAGAGAAATGGAAGCATTGGAAGGTGAAAGTTGAAGAGGATCAAGTTAAGG 1069 Query 1073 AACCAAGGCCTGCTTTAGTAGCTCCTAAAGCTACTTGGATGAGTGATGGAACTCATTGGC 1132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1070 AACCAAGGCCTGCTTTAGTAGCTCCTAAAGCTACTTGGATGAGTGATGGAACTCATTGGC 1129 Query 1133 CCGGTACTTGGGCTGTCTCTGGACCGCACCATTCGAGAGGCGATCACGCTAGTGTTATAC 1192 ||||||||||||||||| || | ||||||||||||||||||||||||| |||| |||||| Sbjct 1130 CCGGTACTTGGGCTGTCCCTTGTCCGCACCATTCGAGAGGCGATCACGTTAGTATTATAC 1189 Query 1193 AGGTGTTGCTTGATCCTCCTGGTGATGAACCGGTGGAAGGGAAAGGCGGTGAGGGGCGCG 1252 ||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| Sbjct 1190 AGGTGTTGCTTGATCCTCCCGGAGATGAACCGGTTGAAGGGAAAGGCGGTGAGGGGCGCG 1249 Query 1253 CACTGGATCTTGAAGGAGTAGACATTCGTTTACCAATGCTTGTTTACGTGAGCCGCGAGA 1312 | |||||| |||||||||||||||| || ||||| |||||||||||||||||||| |||| Sbjct 1250 CGCTGGATTTTGAAGGAGTAGACATGCGATTACCTATGCTTGTTTACGTGAGCCGTGAGA 1309 Query 1313 AACGTCCTGGTTATGACCATAACAAGAAGGCAGGAGCTATGAACGCTTTGGTCAGAGCCT 1372 |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 1310 AACGGCCTGGTTATGACCATAATAAGAAGGCAGGAGCTATGAACGCTTTGGTCCGAGCCT 1369 Query 1373 CGGCTATAATGTCTAATGGACCGTTCATCTTGAACTTGGACTGTGACCACTATGTCTATA 1432 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1370 CGGCTATAATGTCTAATGGACCGTTCATCTTGAACTTGGATTGTGACCACTATGTCTATA 1429 Query 1433 ACTCAAGAGCTTTTAGAGATGGGATCTGTTTCATGATGGACCATGACGGCGACCGTGTTT 1492 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1430 ACTCTAGAGCTTTTAGAGATGGGATCTGTTTCATGATGGACCATGACGGCGACCATGTTT 1489 Query 1493 CCTATGTTCAGTTTCCGCAGAGGTTTGAAGGAATTGATCCATCTGATCGCTATGCTAACA 1552 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1490 CCTATGTTCAGTTTCCGCAGAGGTTTGAAGGAATTGATCCGTCTGACCGCTATGCTAACA 1549 Query 1553 AGAATACTGTTTTCTTCGACATTAATCTGCGAGCTCTCGATGGGATCCAAGGTCCAATGT 1612 | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1550 ACAATACTGTTTTTTTCGACATTAATCTGCGGGCTCTCGATGGGATCCAAGGTCCGATGT 1609 Query 1613 ATGTTGGGACGGGGTGTCTCTTCCGTCGAACCGCGCTTTACGGTTTCAACCCGCCTGATG 1672 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1610 ATGTTGGGACGGGGTGTCTCTTCCGTCGAACCGCACTTTACGGTTTCAACCCGCCTGATG 1669 Query 1673 TTTTTGTGGTTGAGGAAGAACCTTCTGGTTCCTACTGTTTCCCGCTGATCAAGAAACGCA 1732 |||||||||| | | | | | |||||||||| | |||||||||||||| Sbjct 1670 TTTTTGTGGT-G-G-A-G--------G------ACTGTTTCCCACGGATCAAGAAACGCA 1711 Query 1733 GTCCTGCAACCGTAGCTTCTGAACCAGAGTACTACACTGACGAGGAGGAT-A-G---G-T 1786 ||| ||||||||||||||||||||||||| |||||| |||||| |||||| | | | | Sbjct 1712 GTCGTGCAACCGTAGCTTCTGAACCAGAGCACTACATTGACGATGAGGATGAAGATCGCT 1771 Query 1787 TTGATATTGGTTTGATTCGGAAGCAATTCGGTAGCTCGAGTATGCTAGTGAATTCGGTAA 1846 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1772 TTGATATTGGTTTGATTCGGAAGCAATTCGGTAGCTCGAGTATGCTAGTGAGTTCGGTAA 1831 Query 1847 AGGTGGCAGAGTTTGAAGGTAGACCACTAGCTACAGTTCACTCAAGCCGGC-TAGGACGC 1905 |||| ||||||||| ||||||| ||||||||||||||| |||||||||||| | |||||| Sbjct 1832 AGGTCGCAGAGTTTCAAGGTAGGCCACTAGCTACAGTTTACTCAAGCCGGCGT-GGACGC 1890 Query 1906 CCACCTGGCTCTTTGACTGGAAGCCGCAAACCGCTTGATTTCGCGACTGTGAATGAGGCG 1965 || |||||||||||||||||||||||| |||||||||||||||||||||| || ||||| Sbjct 1891 CCTCCTGGCTCTTTGACTGGAAGCCGCGAACCGCTTGATTTCGCGACTGTAAACGAGGCT 1950 Query 1966 GTTAACGTGATCTCGTGCTGGTATGAAGACAAGACTGAATGGGGGTTCAACGTTGGATGG 2025 |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 1951 GTTAACGTGATCTCATGCTGGTACGAAGACAAGACGGAATGGGGATTCAACGTTGGATGG 2010 Query 2026 ATATATGGTTCTGTAACCGAAGACGTAGTGACTGGTTTTCGAATGCATGAAAAAGGATGG 2085 ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 2011 ATATATGGTTCCGTAACTGAAGACGTAGTGACCGGTTTTCGAATGCATGAAAAAGGATGG 2070 Query 2086 AGATCATTCTACTGCGTGACAGAGCCAGACGCATTCCGTGGAAGCGCACCTATAAACCTA 2145 ||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||| Sbjct 2071 AGATCATTCTACTGCGTAACAGAGCCAGACGCATTCCGCGGAACCGCACCGATAAACCTA 2130 Query 2146 ACTGATCGACTCCACCAGGTTCTCCGATGGGCTACGGGATCAGTAGAGATCTTCTTCTCT 2205 |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 2131 ACTGATCGGCTCCACCAGGTTCTCCGATGGGCCACCGGATCAGTAGAGATCTTCTTCTCC 2190 Query 2206 CGAAACAACGCCATTTTCGCCGGTCCAAAACTCAAACTCCTCCAGAGAATCGCTTACCTC 2265 |||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||| Sbjct 2191 CGAAACAACGCCATATTCGCCGGTCCAAAACTCAAATTGCTCCAGAGGATCGCTTACCTA 2250 Query 2266 AATGTTGGAATCTACCCATTCACCAGCATTTTCATCTTAACCTACTGCTTCCTCCCGCCG 2325 || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2251 AACGTCGGAATCTACCCATTCACAAGCATTTTCATCTTAACCTACTGCTTCCTCCCGCCG 2310 Query 2326 TTATCTCTCTTCTCCGGTCACTTCGTTGTTGAAACCCTCACTGGATCATTCCTCATTTAC 2385 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2311 TTATCTCTCTTCTCCGGTCACTTCGTTGTTGAAACCCTCACCGGATCATTCCTCATTTAC 2370 Query 2386 CTTTTGATTATCACATTGTCTCTCTGTGGATTAGCTGTTCTTGAAGTCAAATGGTCAGGT 2445 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2371 CTTTTGATAATCACATTGTCTCTCTGTGGATTAGCTGTTCTTGAAGTCAAATGGTCAGGT 2430 Query 2446 ATCTCATTAGAAGAATGGTGGAGAAACGAGCAGTTCTGGTTAATCGGTGGCACGAGCGCA 2505 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 2431 ATCTCATTAGAAGAATGGTGGAGAAACGAGCAGTTCTGGTTAATAGGCGGCACGAGCGCA 2490 Query 2506 CATTTAGTCGCTGTACTACAAGGTATACTCAAAGTCATAGCCGGAGTCGAAATCTCCTTC 2565 ||||||||||| ||||| ||||||||||||||||| || |||||| |||||||||| ||| Sbjct 2491 CATTTAGTCGCGGTACTTCAAGGTATACTCAAAGTTATCGCCGGAATCGAAATCTCATTC 2550 Query 2566 ACCTTGACTTCAAAATCTTCAACAGGAGGAGATGATGAAGACGACGAGTTCGCTGATCTT 2625 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2551 ACCTTGACTGCAAAATCTTCAACAGGAGGAGATGACGAAGACGACGAGTTCGCTGATCTT 2610 Query 2626 TATCTGTTTAAATGGACTGCTCTGATGATTCCACCGTTAACAATCATAATCTTGAACATC 2685 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2611 TATCTCTTTAAATGGACTGCTCTGATGATTCCACCGTTAACAATCATAATCTTGAACATC 2670 Query 2686 GTAGCGATACTTTTCGCGGTTTGTAGGACGGTTTTCAGTGCGAATCCACAGTGGAGCAAT 2745 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| Sbjct 2671 GTAGCGATACTTTTCGCGGTTTGTAGGACGGTTTTCAGCGAGAATCCACAGTGGAGTAAT 2730 Query 2746 CTTCTTGGAGGGACATTCTTTGCCAGTTGGGTTTTGCTTCATATGTATCCGTTTGCCAAA 2805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2731 CTTCTTGGAGGGACATTCTTTGCCAGTTGGGTTTTGCTTCATATGTATCCGTTTGCGAAA 2790 Query 2806 GGTTTAATGGGAAGAGGAGGAAAAACACCGACAGTTGTGTATGTTTGGTCGGGACTTATT 2865 ||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||| Sbjct 2791 GGTTTGATGGGAAGAGGAGGAAGAACACCGACAATTGTGTATGTTTGGTCAGGACTTATC 2850 Query 2866 GCTATTTGCTTGTCTCTTCTCTACATTACCATTAAGAATTCGGAGATTGATGGAGGATCG 2925 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2851 GCTATTTGCTTATCTCTTCTCTATATTACCATTAAGAATTCGGAGATTGATGGAGGATGG 2910 Query 2926 TTTATGTTGGTTTAG 2940 |||||||||| |||| Sbjct 2911 TTTATGTTGGCTTAG 2925 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110994973930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5