BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32190.1
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473401 jgi|Araly1|473401|fgenesh2_kg.1__3355__AT1G32190.1 2326 0.0
> Ahg473401 jgi|Araly1|473401|fgenesh2_kg.1__3355__AT1G32190.1
Length=1629
Score = 2326 bits (1259), Expect = 0.0
Identities = 1521/1639 (93%), Gaps = 52/1639 (3%)
Strand=Plus/Plus
Query 1 GCACTAACCAATTACCTAGGAAACGCACGTTCACTTTCACACGCTTCctcacacactcac 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1 GCACTAACCAATTACCTAGGAAACGCACGTTCACTCTCACACGCTTCCTCACACA--CAC 58
Query 61 acacacacactcttctctctcttcttc-t--tcctcctctgtactctctctttctcacat 117
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 59 ACACACACACTCTTCTCTCTCTTCTTCTTCCTCCTCCTCTGTACTCTCTCTTTCTCACAT 118
Query 118 aaccag-agcctctctc-tctctctctgtttctcttcagtctctgtgtatacccctt-tc 174
|||||| ||| | || | |||||||||| ||||||||||||| || || ||||| ||
Sbjct 119 AACCAGTGGCC-AT-TCATATCTCTCTGTTCCTCTTCAGTCTCTCTG--TA-CCCTTCTC 173
Query 175 tctcctcctctg--tccctctctctAGCGGCGGACTGATGCACATACCTTTGTATTCTCC 232
||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 174 CCTCCTCCTCTGTCTCCCTCTCTCTAGCGGCGGACTGATGCACACAGCTTTGTATTCTCC 233
Query 233 GCCGTAACTAACTTACAT-A-ATGGGGTGCATGTTCTCTCACCTCGCCGCCAAATTCGCC 290
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 234 GCCGTAACTAACTTACCTAATATGGGGTGCATGTTCTCTCACCTCGCCGCCAAATTCGCC 293
Query 291 TTCTTCCCACCCTCTCCTCCCACTTACCACCTCACCAAAACCCCCGACGGCAAActctcc 350
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 294 TTCTTCCCACCTTCTCCTCCCACTTACCACCTCACAAAAACCCCCGACGGCAAACTCTCC 353
Query 351 gccgtatcctccgcttcctcctcctcctccacttttccctccgccgGAGACCCATCTCTC 410
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 354 GCCGTCTCCTCCGCTTCCTCCTCCTCCTCAACTTTTCCCTCCGCCGGAGACCCATCTCTC 413
Query 411 GACGTCAAAGTAGTAAAGACAAGACGCGGCAACAAAGTCACAGCTTTTTACCTTAGAAAC 470
||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 414 GACGTGAAAGTAGTGAAGACAAGACGCGGCAACAAAGTCACAGCTTTTTACCTGAGAAAC 473
Query 471 CCTAACGCAAGACTCACACTTCTCTACTCTCATGGAAATGCTGCAGATTTGGGACAACTC 530
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 474 CCTAACGCAAGACTCACACTTCTCTACTCACATGGAAATGCTGCAGATTTGGGACAACTC 533
Query 531 TTCGATCTCTTTGTTCAACTCAAAGTCAATCTCCGAGTCAATCTCATGGGGTATGATTAT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTCGATCTCTTTGTTCAACTCAAAGTCAATCTCCGAGTCAATCTCATGGGGTATGATTAT 593
Query 591 TCAGGCTATGGAGCTTCTACTGGTAAGCCGAGTGAGTACGATACATATGCAGATATAGAG 650
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 594 TCAGGCTATGGAGCTTCTACTGGTAAGCCGAGTGAGTACGATACATATGCGGATATAGAG 653
Query 651 GCGGCGTATGAGTGTTTGCAGACGGATTATGGGGTAGGGCAAGAAGATTTGATCTTGTAT 710
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 654 GCGGTGTATGAGTGTTTGCAGACGGATTATGGGGTCGGGCAAGAAGATTTGATCTTGTAT 713
Query 711 GGTCAATCTGTTGGCAGCGGTCCAACGCTGCACCTTGCCTCTAAGCTTCCACGGCTTAGA 770
|||||||||||||||||||| || ||| |||||||||||||||||||||| |||||||||
Sbjct 714 GGTCAATCTGTTGGCAGCGGACCGACGTTGCACCTTGCCTCTAAGCTTCCCCGGCTTAGA 773
Query 771 GGTGTCGTTCTTCATAGCGGCATTCTCTCTGGTCTTCGTGTTCTATGTCATGTCAAGTTC 830
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 774 GGTGTGGTTCTTCATAGTGGCATTCTCTCTGGTCTTCGGGTTCTATGTCATGTCAAGTTC 833
Query 831 AAGTTTTGTTGTGACATTTATTCGAACGTAAACAAGATCAAGAAGGTGAAATGCCCGGTT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AAGTTTTGTTGTGACATTTATTCGAACGTAAACAAGATCAAGAAGGTGAAATGCCCGGTT 893
Query 891 CTTGTCATACACGGAACAGAGGATGATGTGGTGAATTGGTTACACGGAAACAGGCTTTGG 950
|||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 894 CTTGTCATTCATGGAACAGAAGATGATGTGGTGAATTGGTTACATGGAAACAGGCTTTGG 953
Query 951 AAAATGGCAAAGGAACCGTATGAACCGCTCTGGATTAAAGGCGGTGGACATTGCAACCTT 1010
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 954 AAAATGGCAAAGGAACCGTATGAACCGCTCTGGATTAAAGGCGGTGGACACTGCAACCTC 1013
Query 1011 GAGATATATCCGGACTACATTAGACACCTATACCGGTTTATACAAGACATGGAAAATACA 1070
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1014 GAGATATATCCGGACTACATTAGACATCTCTACCGGTTTATACAAGACATGGAAAATACA 1073
Query 1071 ACCACTAAGTCTCGTCTCAAAACGATTTGGCAAGAAATCCGTCGGCGAGATGAATCCACA 1130
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1074 ACAACTAAGTCTCGTCTCAAAAAAATTTGGCAAGAAATCCGTCGGCGAGATGAATCCACA 1133
Query 1131 GGATGTTGTTGTTCCGGACTGTGCAGACCTAGCTGCAGTTGTCCCAAACCTCGGTGTCCC 1190
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GGATGTTGTAGTTCCGGACTATGCAGACCTAGCTGCAGTTGTCCCAAACCTCGGTGTCCC 1193
Query 1191 AAACCTAGTTG-C--AGT--T-GCGGC--T-GCGGTTGTGG---C-G--ACTGCGGTTGT 1235
|||||| | || | | | || || | | |||||||| | | | |||||||||
Sbjct 1194 AAACCTCGGTGTCCCAAACCTAGCTGCAGTTGTGGTTGTGGTTGCAGTGAATGCGGTTGT 1253
Query 1236 TTCAAGTGTTCGTGTCCGACTTTGAAGGGATGTTTCTCTTGCTGCAAGAAACCGAGCTGT 1295
||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TTCAAGTGTTCATGTCCGTCGTTGAAGGGATGTTTCTCTTGCTGCAAGAAACCGAGCTGT 1313
Query 1296 GTTAGTAGTTGTTGCTGTCCCACGTTCAAATGCAGCAGCTGCTTTGGGAAGCCAAAATGT 1355
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1314 TTTAGTAGTTGTTGCTGTCCCAAGTTCAAATGCAGCAGCTGCTTTGGGAAGCCAAAATGT 1373
Query 1356 CCGAAATGCTCTTGTTGGAAATGTCTAAAATGCCCCGACACCGAGTGTTGCCGGAGTAGT 1415
|||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1374 CCGAAATGCTCTTGTTGGAAATGTTTAAAATGCCCCGAGACCGAGTGTTGTTGGAGTAGT 1433
Query 1416 TGTTGTTGTTCCGGTTGTTTTAGCTGGTTGTGTTGCTGCGGTggagggaggaggaaagag 1475
||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1434 TGTTGCTGTCCCGGTTGTTTTAGCTGGTTGTGTTGCTGCGGCGGAGGGAGGAGGAAAGAG 1493
Query 1476 ggggagaggagaggaTC------TACTACGTTGGAGAAGAGTGAAGGGTGATATTGGTA- 1528
||||||||||||||| | ||||||| ||| ||||||||||||| |||||||||
Sbjct 1494 GGGGAGAGGAGAGGAACAGGAACTACTACGGTGGCTAAGAGTGAAGGGTAATATTGGTAT 1553
Query 1529 ----AT-TT---GTATAGATTTTGTTCAAA-GATTTGGTAAAAAACATTAGAAGATTCAT 1579
|| || |||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 1554 TTTGATATTTTTGTATAGATTTTGTTCAAAAGATTTGGTAAAA--CATTAGGAGATTCAT 1611
Query 1580 -GGAAAGAGACTGAGATTT 1597
|||| |||||||||||||
Sbjct 1612 TGGAA-GAGACTGAGATTT 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60868211510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5