BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32200.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473408 jgi|Araly1|473408|fgenesh2_kg.1__3362__AT1G32200.1 2750 0.0
> Ahg473408 jgi|Araly1|473408|fgenesh2_kg.1__3362__AT1G32200.1
Length=1752
Score = 2750 bits (1489), Expect = 0.0
Identities = 1686/1776 (95%), Gaps = 34/1776 (2%)
Strand=Plus/Plus
Query 22 CACACGCTCTGCTTCGTCCAATCACCAAACACGCTTTAATGACTCTCACGTTTTCCTCCT 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CACACGCTCTGCTTCGTCCAATCACCAAACACGCTTTAATGACTCTCACGTTTTCCTCCT 60
Query 82 CCGCCGCAACCGTTGCCGTTGCTGCTGCAACCGTAACCTCCTCCGCTAGGGTTCCGGTTT 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGCCGCAACCGTTGCCGTTGCTGCTGCAACCGTAACCTCCTCCGCTAGGGTTCCGGTTT 120
Query 142 ATCCACTCGCTTCGTCGACTCTTCGTGGATTAGTATCTTTCAGATTAACCGCGAAGAAGC 201
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 121 ATCCACTCGCTTCGTCGACTCTTCGCGGATTCGTTTCTTTCAGATTAACCGCGAAGAAGC 180
Query 202 TGTTTCTGCCGCCTCTTCGTTCTCGCGGCGGCGTTAGTGTGAGAGCCATGTCTGAGCTTG 261
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 TGTTTCTGCCGCCTCTTCGTTCTCGCGGCGGCGTTAGTGTGAGAGCGATGTCTGAGCTTG 240
Query 262 TTCAGGATAAAGAATCGTCCGTCGCGGCGAGCATTGCTTTCAATGAAGCCGCCGGTGAGA 321
|||||||||| ||||| ||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 241 TTCAGGATAAGGAATCTTCCGTTTCGGCGAGCATTGCTTTAAATGAAACCGCCGGTGAGA 300
Query 322 CGCCGAGTGAGCTTAGTCATTCCCGTACTTTCTTGGATGCGCGAAGTGAACAAGATCTTT 381
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCCGAGTGAGCTTAATCATTCCCGTACTTTCTTGGATGCGCGAAGTGAACAAGATCTTT 360
Query 382 TATCTGGTATCAAGAAGGAAGCTGAAGCTGGAAGGTTGCCAGCAAATGTTGCAGCAGGAA 441
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 361 TATCTGGTATCAAGAAGGAAGCTGAAGCTGGAAGGTTGCCTGCAAATGTTGCATCAGGAA 420
Query 442 TGGAAGAATTGTATTGGAACTACAAAAATGCAGTTTTAAGTAGTGGAGCTTCCAGGGCAG 501
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 421 TGGAAGAATTGTATTGGAACTACAAAAATGCAGTTTTAAGTAGCGGAGCTTCTAGGGCAG 480
Query 502 ATGAAACTGTTGTATCAAACATGTCTGTTGCTTTTGATCGCATGCTTCTTGGTGTGGAGG 561
|||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 ATGAGACTGTTATATCAAACATGTCTGTTGCTTTTGATCGTATGCTTCTTGGTGTGGAGG 540
Query 562 ATCCTTATACTTTTAATCCATATCATAAAGCAGTCAGAGAACCATTTGACTACTACATGT 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATCCTTATACTTTTAATCCATATCATAAAGCAGTCAGAGAACCATTTGACTACTACATGT 600
Query 622 TTGTCCATACATACATCCGTCCTCTTATTGATTTCAAAAATTCGTACGTTGGAAATGCTT 681
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 TTGTCCATACATACATTCGTCCTCTGATTGATTTCAAAAATTCGTACGTTGGAAATGCTT 660
Query 682 CTATATTCTCTGAGCTGGAAGACAAGATTCGACAGGGACACAATATCGTGTTGATATCAA 741
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 CTATATTCTCTGAGCTGGAAGACAAGATTCGGCAGGGACACAATATCGTGTTGATATCAA 720
Query 742 ACCATCAAAGTGAAGCTGATCCGGCTGTCATTTCTCTATTGCTTGAAGCACAATCTCCTT 801
||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 721 ACCATCAGAGTGAAGCTGATCCGGCGGTCATTTCTCTTTTGCTTGAAGCACAGTCTCCTT 780
Query 802 TCATAGGAGAGAACATTAAATGTGTGGCTGGTGATCGAGTCATCACTGATCCTCTTTGTA 861
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCATTGGAGAGAACATTAAATGTGTGGCTGGTGATCGAGTCATCACTGATCCTCTTTGTA 840
Query 862 AGCCGTTCAGTATGGGAAGGAACCTCATATGTGTTTACTCGAAAAAGCACATGAATGATG 921
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGCCGTTTAGTATGGGAAGGAACCTCATATGTGTTTACTCGAAAAAGCACATGAATGATG 900
Query 922 ATCCTGAGCTTGTTGACATGAAAAGAAAAGCAAACACACGAAGCTTAAAGGAGATGGCTA 981
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATCCCGAGCTTGTTGACATGAAAAGAAAAGCAAACACACGAAGCTTAAAGGAGATGGCTA 960
Query 982 CAATGCTAAGGTCTGGCGGTCAACTTATATGGATTGCACCAAGCGGTGGAAGGGACCGCC 1041
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 CAATGCTAAGGTCTGGCGGTCAACTTATATGGATTGCACCAAGCGGTGGAAGAGACCGCC 1020
Query 1042 CGAATCCTTCTACTGGGGAATGGTTTCCTGCACCCTTTGATGCTTCTTCGGTAGACAACA 1101
||||||||||||| || ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1021 CGAATCCTTCTACAGGAGAATGGTTTCCCGCACCCTTTGATTCTTCTTCGGTAGACAACA 1080
Query 1102 TGAGAAGACTGGTTGAACATTCTGGCGCTCCTGGACATATATATCCAATGTCTTTGCTTT 1161
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1081 TGAGAAGACTAGTTGAACATTCTGGTGCTCCTGGACATATATATCCAATGTCTTTGCTTT 1140
Query 1162 GCTATGACATCATGCCCCCTCCACCCCAGGTTGAGAAAGAAATCGGAGAGAAAAGATTAG 1221
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1141 GCTATGACATCATGCCCCCTCCACCACAAGTTGAGAAAGAAATTGGAGAGAAAAGATTAG 1200
Query 1222 TTGGGTTTCACGGTACTGGACTATCAATTGCTCCTGAAATCAACTTCTCAGACGTCACAG 1281
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1201 TTGGGTTTCACGGTACTGGACTATCAATTGCTCCTGAAATCAGCTTCTCAGATGTCACAG 1260
Query 1282 CAGACTGCGAGAGCCCTAATGAGGCGAAAGAAGCATACAGCCAAGCTTTGTACAAGTCGG 1341
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CAGACTGCGAGAACCCTAATGAGGCGAAAGAAGCATACAGCCAAGCTTTGTACAAGTCGG 1320
Query 1342 TGAATGAACAATACGAGATCTTAAACTCTGCGATTAAACACAGAAGAGGAGTAGAAGCAT 1401
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1321 TCAATGAACAATACGAGATCTTAAACTCAGCGATTAAACACAGAAGAGGAGTAGAAGCAT 1380
Query 1402 CAACTTCAAGG-GTCTCTTTGTCACAACCTTGGAATTAGTCTCTCG--TTTTAGGGATAC 1458
|||| ||| | ||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1381 CAACGTCA-GCTGTCTCCTTGTCACAACCTTGGAATTAGTCTCTCTCATTTTAGGGATAC 1439
Query 1459 ACAAA-CACAATCAATGGAAAATACTCaaaaaaaaaaaaaaTGGAGATATTATTCACACG 1517
|||| ||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1440 ACAACGCACAATCAATGGAAA-TACTCAAAAAAA-------TGGAGATATTATTCACACG 1491
Query 1518 TTGTCCTAGGGAGttttttttttttttCAAACGAGTTCCAAAGCCTCCTTGAAACAACAA 1577
|| |||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 1492 TTTTCCTAGGGAGTTTTTTTT-------A---G--TTCCAAAGCCTCCTTGAAACAACAA 1539
Query 1578 GaaaaaaaaaaaCAGGTACGTTGTTGGTTTCTAACGTAGGAAGAAGAAGAAGTTGGTTTG 1637
|||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1540 GAAACAAAAAAACAGGTACGTTGTTGGTT-CTAACGTAGGAAGAAGAAGT--TTGGTTTG 1596
Query 1638 TGTACATATGAATAGTGAGAGAAAACAAACTCTTGCTAGGCTCTTAGATCT-CACATATG 1696
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1597 TGTACATATGAATAGTGAGAGAAAACAAACTCTTGCTAGGCTCTTAGAGATTCACATATG 1656
Query 1697 GTTTCATATGTA--A-TATTCTTTTCTTTTTTG-GAGGT-TTCCTACTATATAGAGCCGA 1751
||||||||||| | |||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1657 CTTTCATATGTAGTAATATTCTTTTCTTTTTTTTGAGGGATTCCTACTATATAGAGCCGA 1716
Query 1752 ATAATTCACAATCCCAATTTATGCCTCTTCCTTCTC 1787
||||||||||||||||||||||||||||||||||||
Sbjct 1717 ATAATTCACAATCCCAATTTATGCCTCTTCCTTCTC 1752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5