BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32210.1
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922300 jgi|Araly1|922300|scaffold_103581.1 623 5e-178
Ahg901398 jgi|Araly1|901398|Al_scaffold_0004_2048 370 7e-102
> Ahg922300 jgi|Araly1|922300|scaffold_103581.1
Length=388
Score = 623 bits (337), Expect = 5e-178
Identities = 372/389 (96%), Gaps = 2/389 (1%)
Strand=Plus/Plus
Query 97 TTGTTGTTCTTCGATT-GAAAATGGTGAAATCGACGAGTAAGGATGCTCAGGATCTATTT 155
|||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 TTGTTGTTCTTCGATTCG-AAATGGTGAAATCGACAAGTAAGGATGCTCAGGATCTGTTT 59
Query 156 CGATCTCTTCGGTCTGCTTATTCTGCTACTCCGACTAATCTTAAGATCATCGACTTGTAT 215
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 60 CGATCTCTTCGTTCTGCTTATTCCGCTACTCCGACTAATCTGAAGATCATCGACTTGTAT 119
Query 216 GTCGTTTTCGCTGTCTTCACCGCTCTGATTCAGGTGGTTTATATGGCTTTGGTGGGATCA 275
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 GTCGTTTTCGCTGTCTTCACCGCTCTGATTCAGGTGGCTTATATGGCTTTGGTGGGATCA 179
Query 276 TTTCCATTTAACTCGTTCCTATCTGGAGTTCTCTCTTGTATCGGGACAGCAGTTCTTGCT 335
||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 180 TTTCCGTTTAACTCATTCCTATCTGGAGTTCTCTCTTGTATCGGGACTGCAGTTCTGGCT 239
Query 336 GTTTGCCTCCGGATTCAAGTGAACAAAGAAAACAAGGAATTCAAGGATTTAGCACCTGAG 395
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 240 GTTTGCCTTCGGATTCAAGTGAACAAAGAAAACAAGGAATTCAAGGATTTGGCACCGGAG 299
Query 396 AGAGCTTTTGCTGATTTTGTTCTCTGCAACTTAGTCCTCCATTTGGTGATCATCAACTTC 455
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 AGAGCTTTTGCTGATTTTGTTCTCTGCAACTTAGTCCTCCACTTGGTGATCATCAACTTC 359
Query 456 CTCGGATAGAGGTTTCACTCTCCTGTCTA 484
|||||||||||||||||||||||| ||||
Sbjct 360 CTCGGATAGAGGTTTCACTCTCCTATCTA 388
> Ahg901398 jgi|Araly1|901398|Al_scaffold_0004_2048
Length=351
Score = 370 bits (200), Expect = 7e-102
Identities = 298/344 (87%), Gaps = 12/344 (3%)
Strand=Plus/Plus
Query 126 TCGACGAGTAAGGATGCTCAGGATCTATTTCGA-TCTCTTCGGTCTGCTTATTCT-GCTA 183
||||| |||||||||||||||||||| ||| | |||||||| |||||||| ||| ||||
Sbjct 13 TCGACTAGTAAGGATGCTCAGGATCT-CTTCCATTCTCTTCGTTCTGCTTA-TCTCGCTA 70
Query 184 CTCCGACTAATCTTAAGATCATCGA-CTTGTATG-TCGTTTTCGCTGTCTTCACCGCTCT 241
| ||||| ||||| ||||||||||| ||| |||| | | |||||| |||||||| ||| |
Sbjct 71 CACCGACGAATCTCAAGATCATCGACCTT-TATGTTTG-TTTCGCGGTCTTCACAGCTTT 128
Query 242 GATTCAGGTGGTTTATATGGCT-TTGGTGGGATCATTTCCATTT-AACTCGTTCCTATCT 299
||| ||||| | ||| |||||| || || ||||| ||||| ||| |||||||| || ||
Sbjct 129 GATCCAGGTTGCTTACATGGCTCTT-GTTGGATCGTTTCC-TTTCAACTCGTTTCTCTCA 186
Query 300 GGAGTTCTCTCTTGTATCGGGACAGCAGTTCTTGCTGTTTGCCTCCGGATTCAAGTGAAC 359
||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 187 GGAGTTCTCTCGTGTATTGGGACAGCCGTTCTTGCTGTCTGCCTCCGGATTCAAGTGAAC 246
Query 360 AAAGAAAACAAGGAATTCAAGGATTTAGCACCTGAGAGAGCTTTTGCTGATTTTGTTCTC 419
||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 247 AAAGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTGCTGATTTTGTCCTC 306
Query 420 TGCAACTTAGTCCTCCATTTGGTGATCATCAACTTCCTCGGATA 463
||||||||||||||||| | |||||||| |||||| | |||||
Sbjct 307 TGCAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTAGGATA 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23979314793
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5