BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32220.1
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473411 jgi|Araly1|473411|fgenesh2_kg.1__3365__AT1G32220.1 1705 0.0
> Ahg473411 jgi|Araly1|473411|fgenesh2_kg.1__3365__AT1G32220.1
Length=1068
Score = 1705 bits (923), Expect = 0.0
Identities = 1007/1048 (96%), Gaps = 4/1048 (0%)
Strand=Plus/Plus
Query 42 TTGCTTCAATTCCGCCGAGTAAGTAGTAACCACATTTTTCTCGCTTTGCCGTCTTCTCCG 101
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 1 TTGCTTCAATTCCGCCGAAT-TGTACCAACCACATTTTTCTCGCTTTGCCGTCTTCTCCG 59
Query 102 GCGATTTTCAGACACTAATTTTCTCTCCGGTTGTTGCAATCATATTTTCTGTCGGAAGAT 161
||||||||||||||||| |||||||||||||| || |||||| |||||||||||| | ||
Sbjct 60 GCGATTTTCAGACACTAGTTTTCTCTCCGGTTATTACAATCAAATTTTCTGTCGG-A-AT 117
Query 162 ATTGAAATCAGAAACCGGGAAAAATGACTTCGTTTCTTAGTTTCTCCGCCATTTCAGCTC 221
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATTGAAATCAGAAACCGGG-AAAATGACTTCGTTTCTTAGTTTCTCCGCCATTTCAGCTC 176
Query 222 ATCCACCTACTTTTTCCGGCGCTTCATTTCGTCCTCGCTCTTTCTCTCCCCGATTGTTCA 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 ATCCACCTACTTTTTCCGGCGCTTCATTTCGTCCTCGCTCTTTCTCTCCCCGATTGTTTA 236
Query 282 AGTCTTGTGTTAAGTGCACTTATGCTGAAGCTGGATTAAGCAGCGCTTCATGGTCAGCCC 341
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 237 AGTCTTGTGTTAAGTGCACTTATGCTGAAGCTGGATTAAGTAGTGATTCATGGTCAGCCC 296
Query 342 CTATTGACATTGTGGCAGATGTCAAATCCGAAAGGGTTGTAGTTCTTGGTGGGAATGGTT 401
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 297 CTATTGACGTTGTGGCAGATGTCAAATCCGAAAGGGTTGTAGTTCTTGGTGGCAATGGTT 356
Query 402 TCGTTGGCTCAGCTATCTGCAAAGCAGCAATCTCCAATGGTATTGAGGTTGTGAGTGTTA 461
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 TTGTTGGCTCAGCTATCTGCAAAGCAGCAATCTCTAATGGTATTGAGGTTGTGAGTGTTA 416
Query 462 GCAGGTCAGGTCGTCCTAACTTCGAAGATTCATGGTTGGATCAGGTTACATGGGTTACTG 521
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 GCAGGTCAGGTCGTCCTAACTTCCAAGATTCATGGTTGGATCAGGTTACATGGGTTACTG 476
Query 522 GTGATGTTTTCTATTTGAATTGGGATGAAGTACTTCTTGGTGCTACTGCTGTAGTTTCAA 581
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 477 GTGATATTTTCTATTTGAATTGGGATGAAGTACTTCTTGGTGCTACTGCTGTAGTTTCGA 536
Query 582 CCATTGGTGGTTTTGGAAATGAAGAACAGATGAAAAGAATCAATGGTGAAGCTAACGTTA 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CCATTGGTGGTTTTGGAAATGAAGAACAGATGAAAAGAATCAATGGTGAAGCTAACGTTA 596
Query 642 CCGCTGTGAATGCTGCTAAGGATTTTGGGGTCCCTAAGTTCGTCTTGATCACGGTTCACG 701
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 597 CCGCTGTGAATGCTGCTAAGGATTTCGGGGTTCCTAAGTTCGTCTTGATCACGGTTCACG 656
Query 702 ATTACAATCTTCCGCCATTTATTCTCTCCAACGGATATTTCACTGGAAAACGTAACGCGG 761
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |
Sbjct 657 ATTACAATCTTCCGCCATTTATTCTCTCCAGCGGATATTTCACCGGAAAACGTAATGCAG 716
Query 762 AGGCAGAACTTCTTTCCAAGTATCCCACCTCAGGAGTTGTGCTAAGACCCGGTTTCATAT 821
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGGCAGAACTTCTTTCCAAATATCCCACCTCAGGAGTTGTGCTAAGACCCGGTTTCATAT 776
Query 822 ACGGGAAACGAAAAGTGAACGGAATCGAGGTCCCGCTTGATCTAGTCGGGGAGCCACTAG 881
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 777 ACGGGAAAAGAAAAGTGAACGGAATCGAGGTCCCTCTTGATCTAGTCGGGGAGCCACTAG 836
Query 882 ACAAGATCTATGATTCAGCAGAGAGGTTCATTAGACCATTGAGGTCTCTCCCTGCATCTG 941
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 837 ACAAGATCTATGATTCTGCAGAGAGGTTCATTAGACCGTTGAGGTCTCTCCCTGCATCTG 896
Query 942 ATCTCATCTTGGCTCCACCGGTTAACGTCGATGATTTAGCACTTGCTGTGATCAACGCTG 1001
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 897 ATCTCATCTTGGCGCCACCGGTTAACGTCGATGATTTAGCACTTGCTGTCATTAACGCCA 956
Query 1002 TTAAAGATGACGACTTCTTTGGCATTTTCACTATTGAGCAGATCAAAGAAGCAGCTGCAA 1061
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 957 TTAAAGATGACGACTTCTTTGGCATTTTCACTATTGAACAGATCAAAGAAGCAGCTGCAA 1016
Query 1062 AAATGAGAGCGTGAAGAGTCTTTAGATA 1089
||||||||| ||||||||||||||||||
Sbjct 1017 AAATGAGAGTGTGAAGAGTCTTTAGATA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5