BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32240.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473414 jgi|Araly1|473414|fgenesh2_kg.1__3368__AT1G32240.1 2305 0.0
> Ahg473414 jgi|Araly1|473414|fgenesh2_kg.1__3368__AT1G32240.1
Length=1550
Score = 2305 bits (1248), Expect = 0.0
Identities = 1455/1548 (94%), Gaps = 42/1548 (3%)
Strand=Plus/Plus
Query 12 TCTCCCTCTATATCTCTCAAAAATCTTTGCAAAATCTTCTTAACCTCAAACAATATAAAC 71
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TCTCTCTCTATATCTCTCAAAAATCTTTGCAAAATCTGCTTAACCTCAAACAATATAAAC 60
Query 72 AACATTCTCAACAAAACCCAGAAATCTCTTCCTCAAATCCTCAATACCCTTTTCTATTTT 131
||||||||||||||||||||||||||||||||||||||| | |||| | || |||
Sbjct 61 AACATTCTCAACAAAACCCAGAAATCTCTTCCTCAAATCTTTAATA--C---TC---TTT 112
Query 132 CCTCCCTATACCCTTAATAAAAAAGGATATCTTTCTCTTTTTATCTTCTTTGTCCTAATT 191
| || | || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 113 --T--CT-T----TT--TAAAAAAGGATATCTTTCTCTTATTATCTTCTTTGTCCTAACC 161
Query 192 C-AAG-AAAACAAGAACTAGGGTTCATCATCTGTGGAAACCGACTGAAGAATCTCTTC-- 247
| ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 162 CAAAGAAAAACAAGAACTAGGGTTCATCATATCTGGAAACCGACTGAAGAATCTCTTCAA 221
Query 248 ----AA-G--AAGAAGTTAAAGGTCTCTTTCATGGAGCTGTTTCCTGCTCAGCCCGATTT 300
|| | ||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 222 GAAGAAGGATAAGAAGTTAAAGGTCTCTTTCATGGAGTTATTTCCTGCCCAGCCCGATTT 281
Query 301 ATCCTTACAAATAAGTCCACCAAACAGTAAACCATCATCGACATGGCAGAGAAGAAGATC 360
||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 282 ATCCTTACAGATAAGTCCACCGAACAGCAAACCATCATCAACATGGCAGAGAAGAAGATC 341
Query 361 AACAACAGATCAAGAAGATCATGAAGAACTCGATTTAGGGTTTTGGAGAAGAGCTCTTGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 AACAACAGATCAAGAAGATCATGAAGAACTCGATTTAGGGTTTTGGAGAAGAGCTCTTGA 401
Query 421 TTCAAGAACATCTTCTCTCGTCTCTAATTCCACCTCAAAAACAATCAATCATCCATTCCA 480
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 402 TTCAAGAACATCTTCTCTCGTCTCTAATTCCAGCTCAAAAACGATCAATCATCCATTCCA 461
Query 481 AGACCTCTCGCTCTCTaacatctctcatcatcaacaacaacaaca--a-catcatcatcc 537
|||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 462 AGACCTCTCGCTCTCTAACAACTCTCATCATCAACAACAACAACATCATCATCATCATCC 521
Query 538 acaacTTCTCCCTAATTGCAACAGCTCTAACATCTTGACCTCTTTCCAATTTCCGACACA 597
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 522 TCAGCTTCTCCCTAATTGCAACGGCTCTAACATCTTGACCTCTTTCCAATTTCCGACACA 581
Query 598 GCAGCAACAACAACACTTACAAGGGTTTCTTGCTCACGACCTTAATACTCACTTAAGACC 657
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 582 ACAGCAACAACAACACTTACAAGGGTTTCTTGCTCGTGACCTTAATACTCACTTAAGACC 641
Query 658 AATAAGAGGAATACCACTTTACCACAACCCTCCTCCACATCATCATCCTCACCGTCCGCC 717
|||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 642 AATAAGAGGAATCCCTCTTTACCACAACCCTCCTCCACATCATCA-CC-----GTCCGCC 695
Query 718 ACCGCCATGTTTCCCTTTCGACCCGTCGTCTCTAATACCCTCTTCCTCCACTTCCTCGCC 777
||| || |||||||||||||| |||||| ||||||| |||||||||||| ||||||||||
Sbjct 696 ACCACCGTGTTTCCCTTTCGATCCGTCGGCTCTAATTCCCTCTTCCTCCTCTTCCTCGCC 755
Query 778 GGCTCTAACCGGAAACAACAATAGCTTTAATACTAGTAGCGTTAGTAACCCTAATTACCA 837
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 756 GGCTCTTACCGGAAACAACAATAGCTTTAATACAAGTAGCGTTAGTAACCCTAATTACCA 815
Query 838 CAATCATCATCACCAGACTCTAAACAGAGCCAGATTCATGCCAAGATTCCCAGCTAAACG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 816 CAATCATCATCACCAGACTCTAAACAGAGCCAGATTCATGCCAAGATTCCCAGCTAAGCG 875
Query 898 AAGCATGAGAGCTCCTA-GGATGCGATGGACCACCACTCTTCATGCCCGGTTCGTTCACG 956
||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 876 AAGCATGAGAGCTCC-ACGGATGCGATGGACCACCACTCTCCATGCCCGGTTCGTTCACG 934
Query 957 CCGTTGAATTACTCGGTGGCCATGAAAGAGCAACACCTAAATCAGTTCTTGAGCTCATGG 1016
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 935 CCGTTGAATTACTCGGTGGCCATGAAAGAGCAACACCCAAATCAGTTCTTGAGCTCATGG 994
Query 1017 ATGTCAAAGATCTAACCTTGGCTCATGTTAAGTCCCATTTACAGATGTACAGAACAGTGA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 ATGTCAAAGATCTAACCTTGGCTCATGTTAAGTCCCATTTACAGATGTACAGAACAGTGA 1054
Query 1077 AGACAACCGACAAAGCAGCAGCTTCGTCAGGACAATCTGATGTCTATGAAAATGGATCAT 1136
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1055 AGACAACCGACAAAGCAGCAGCTTCGTCAGGACAATCTGATGTCTATGAAAATGGATCTT 1114
Query 1137 CAGGAGATAATAACTCAGACGACTGGATGTTCGATATGAATAGAAAATCGAGAGATAGCG 1196
|||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 1115 CAGGAGATAATAACTCAGACGATTGGATGTTCGATATGAATCGAAAATCTAGAGATAGCG 1174
Query 1197 AGGAATTGACGAATCCTCTAGAGAAATCAAATGGTCTATGGACCAATTCTTCCGGAGAAG 1256
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1175 AGGAATTGACGAATCCTCTAGAGAAATCAAATGGTCTATGGACAAATTCTTCCGGAGAAG 1234
Query 1257 CACGTTTGCATGGGAAGTTAATCGATAATGTTGCAGAAATTATGCTACCTTCTGAGAAGG 1316
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 CACGTTTGCATGGGAAGCTAATCGATAATGTTGCAGAAATTATGCTACCTTCTGAGAAGG 1294
Query 1317 AACTAGATGGAAAGTGCTCAAGTTATGAGAGAATATCATCAGAAGAGATGAGCTCATCAA 1376
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1295 AACTAGATGGAAAGTGCTCAAGTTATGAGAGAATATCCTCAGAAGAGATGAGCTCATCAA 1354
Query 1377 GCATCTCGGGAACAAGCCCTTTCAAGCCAAATCTTGAGTTTACTCTGGGTCGATCTCACT 1436
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1355 GCATCTCGGGAACAAGCCCATTCAAACCAAATCTTGAGTTTACTCTGGGTCGATCTCACT 1414
Query 1437 AAATTTATTGTTGTAGCTAGGTAGTAATTAATTAGTATCAATTAACTTATATTTT-GGCT 1495
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1415 AAATTTATTGTTATAGCTAGCTAGTAATTAATTAGTATCAATTAACTTATATTTTTGGCT 1474
Query 1496 ACTGACTAGTTTCGATATTCATATCAATTGAATAAGtttttttttttt 1543
| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1475 AATGACTAGTTTCGATATTCATATCAATTGAATAAGTGTTTTTTTTTT 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5