BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32250.1
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922306 jgi|Araly1|922306|scaffold_103587.1 776 0.0
> Ahg922306 jgi|Araly1|922306|scaffold_103587.1
Length=542
Score = 776 bits (420), Expect = 0.0
Identities = 474/501 (95%), Gaps = 0/501 (0%)
Strand=Plus/Plus
Query 1 ATGAGTCACAAAGTCTCCAAAAAGTTAGACGAGGAGCAAATCAATGAGCTCCGGGAGATT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGAGTCACAAAGTCTCCAAGAAGTTAGACGAGGAGCAAATCAATGAGCTCCGGGAGATT 81
Query 61 TTCCGGTCATTTGATCGGAACAAAGACGGAAGCTTAACTCAGCTCGAGCTCGGATCACTT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 82 TTCCGGTCATTTGATCGGAACAAAGACGGAAGTTTAACTCAGCTCGAGCTCGGATCACTT 141
Query 121 CTCCGAGCACTAGGGGTTAAACCAAGTCCAGACCAATTCGAAACGCTAATAGACAAAGCC 180
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 142 CTCCGAGCACTAGGGGTTAAACCAAGTCCAGACCAATTCGAAATGCTTATAGACAAAGCC 201
Query 181 GACACTAAAAGCAACGGACTCGTAGAGTTCCCGGAGTTCGTAGCTTTGGTCTCTCCGGAG 240
|||||||||||||||||||| || |||||||||||||| || ||||| ||||| ||||||
Sbjct 202 GACACTAAAAGCAACGGACTGGTCGAGTTCCCGGAGTTTGTGGCTTTAGTCTCACCGGAG 261
Query 241 CTTCTTTCGCCGGCGAAGAGGACAACTCCTTACACGGAGGAGCAGCTTCTCCGATTGTTT 300
||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 262 CTTCTTTCGGCGGCCAAGAGGACAACTCCTTACACGGAGGAGCAGCTCCTCCGATTGTTT 321
Query 301 AGGATATTCGACACGGATGGCAACGGGTTTATCACTGCGGCGGAATTGGCTCACTCTATG 360
|||||||||||||| || || ||||||||| | |||||||||||||||||||||||||||
Sbjct 322 AGGATATTCGACACCGACGGAAACGGGTTTCTAACTGCGGCGGAATTGGCTCACTCTATG 381
Query 361 GCTAAGCTTGGCCACGCCTTGACGGTGGCGGAATTGACGGGGATGATAAAGGAGGCGGAT 420
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 382 GCTAAGCTTGGCCACGCCTTGACGGTTGCGGAATTGACGGGGATGATTAAGGAGGCGGAT 441
Query 421 AGCGATGGCGATGGCCGGATTAACTTCCAGGAGTTCGCAAAGGCTATTAACTCTGCTGCA 480
||||| ||||||||||||||||| || || |||||||| |||||||| ||||||||||||
Sbjct 442 AGCGACGGCGATGGCCGGATTAATTTTCAAGAGTTCGCTAAGGCTATCAACTCTGCTGCA 501
Query 481 TTTGATGATATATGGGGTTGA 501
||||||||| |||||||||||
Sbjct 502 TTTGATGATTTATGGGGTTGA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18200215953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5