BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32260.1
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473416 jgi|Araly1|473416|fgenesh2_kg.1__3370__AT1G32260.1 1142 0.0
> Ahg473416 jgi|Araly1|473416|fgenesh2_kg.1__3370__AT1G32260.1
Length=857
Score = 1142 bits (618), Expect = 0.0
Identities = 790/871 (91%), Gaps = 20/871 (2%)
Strand=Plus/Plus
Query 10 AAAGGTCAGTGACTGACGAAAATGGCGATCATGCGATAATCGTGTAGCCgaagaagaaga 69
|||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 1 AAAGGTCAGTGACTGACGAAAATGGCGATCATCCGATAACCGTGTAGCCGCCGAAGAAGA 60
Query 70 agaagaagaagaaagaagaTGGTGTTTTGGGAGATAACTCTAGGAACAGCTTACTTCTTG 129
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AG--GTTTTAGAAGGAAGATGGTGTTTTGGGAGATAACTCTAGGAACAGCTTACTTCTTG 118
Query 130 GGACTGAGACGGACTTATAGGCTCG-CTCTGAAGATCCAGCGTCGGCTTGTTACTCCGAA 188
||||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||
Sbjct 119 GGACTGAGACGGACTTATAGGCTCGCCT-TGAAGATCCAGCGTCGGATTGTTAGTCCGAA 177
Query 189 ACATCCCAAAATCCGTCAATTTCTTCATCGGAGGACTCGTAAAATCTTCGATGTGGCGAT 248
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACATCCCAAAATCCGTCATTTTCTTCATCGGAGGACTCGTAAAATCTTCGATGTGGCGAT 237
Query 249 TTCGGTTCACAAGAACATACAAGAAAGAGACATAGAAGTTGGTAGGAATCTCGGAAATTG 308
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 238 TTCGGTTCACAAGAACATACAAGAAAGAGACATAGAAGTTGGTAGGAATCTTGGAAACTG 297
Query 309 GATTCTTCGTTGGCTCGATAAGATGAAACCAGCAGCTCAGATCCGTACTCGGCCAGAACT 368
|||||| |||||||| ||| ||||||||||||||||||||| |||||||| ||||| ||
Sbjct 298 GATTCTCCGTTGGCTTGATCGGATGAAACCAGCAGCTCAGATACGTACTCGACCAGAGCT 357
Query 369 ACCACACAACAGCAATTCCAACATGGACAAGGCAAAGAGACTAACGGAATTGTCCC-GTC 427
|||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| | |
Sbjct 358 ACCACATAACAGCAATTCGAACATGGACAAGGCAAAAAGACTAACGGAATTGTCCCAG-C 416
Query 428 CCAAATCGCACACGAACACGACGCAGACTCCACAAAACCGTGAATCCGATAGGCATTTGT 487
| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct 417 CAAAATCGCACACGAACACGACGCAGACTCCTCAAAACCGTGAATCCGGTAGGCAGTTGT 476
Query 488 T-TACCTCGTTGAAACACTTCCGGCACAAGCCATTCCCGTCTGTCTCTATGATGATCCAA 546
| | |||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TCT-CCTCACTGAATCATTTCCGGCACAAGCCATTCCCGTCTGTCTCTATGATGATCCAA 535
Query 547 CCGCCGAGACCCAATGGAACTACGACTCAGTACAGACATTACTACAGTGGCGGTCTAGCA 606
||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 536 CCGCCGAGACCCAGTGGAACTACGACTCAGTACAGACATTAC-A--GTGGCAGTCTAGCC 592
Query 607 GCAAGTCTGATTCAACCGAGCTATGTTACAGGTGGCGGGTTCAATGGTGTAGTCAGGAAA 666
| |||| |||||||||||||||||||||| |||||| |||| |||||||| ||||||||
Sbjct 593 GGAAGTGTGATTCAACCGAGCTATGTTACTGGTGGCAGGTTTGATGGTGTAATCAGGAAA 652
Query 667 GACATTTTGCAGTGGATGGCACAAAGATGAAAGATGATGCAGCTAAGTCCCATCTTTCTC 726
||||||||||||||||| |||| ||||||||||||| ||||| || |||||||||||||
Sbjct 653 GACATTTTGCAGTGGATATCACAGAGATGAAAGATGAAGCAGCAAAATCCCATCTTTCTC 712
Query 727 T-GACATAATTGAGCCTCTCTCTTTTCtttttttAACTTTTAATTGCAGAAATTAATGTG 785
| |||||||||||||||||||||||| || |||||||||||||||||| | ||||
Sbjct 713 TCGACATAATTGAGCCTCTCTCTTTT-TT-----AACTTTTAATTGCAGAAACTGGTGTG 766
Query 786 ATTGTTGATAGATCCTGAAGCAACTATGTAGTAAACATGACAATGTCTTTTTCTTTC-T- 843
|| || ||||||| | ||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 767 ATAGTGGATAGATTCGGAAGCAAGTATGTAGAAAACATGACAATGTCTTTTTCTTTTATT 826
Query 844 AACGCTTGAATAAAGTTTCATATACTTTGAG 874
||||||| ||||||||||||| ||| |||||
Sbjct 827 AACGCTTAAATAAAGTTTCATTTACATTGAG 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32404479450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5