BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32270.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913035 jgi|Araly1|913035|Al_scaffold_0001_3289 1221 0.0
> Ahg913035 jgi|Araly1|913035|Al_scaffold_0001_3289
Length=999
Score = 1221 bits (661), Expect = 0.0
Identities = 899/1011 (89%), Gaps = 27/1011 (3%)
Strand=Plus/Plus
Query 7 AGATCCAACGATGTGAAATTCCAAGTCTACGACGCTGAGCTGACACATTTCGATCTCGAA 66
||||||||||| |||||||| |||||||| ||||| ||||||||||||||| ||||||||
Sbjct 7 AGATCCAACGACGTGAAATTTCAAGTCTATGACGCAGAGCTGACACATTTCAATCTCGAA 66
Query 67 AGCAACAATAACCTCCAGTACAGTCTCTCTTTGAATCTCTCCATCCGAAACTCGAAGAGT 126
|||||||| |||||||| |||| |||| |||||| |||||||||||| ||||||||||||
Sbjct 67 AGCAACAACAACCTCCATTACAATCTCACTTTGAGTCTCTCCATCCGGAACTCGAAGAGT 126
Query 127 AGTATCGGAATCCATTACGA-TAGGTTTGAAGCAACCGTTTACTACATGAATCAGCGGTT 185
||||||| |||||||| ||| | ||||||||||| ||||||||||||||||||| ||||
Sbjct 127 AGTATCGAAATCCATTCCGACCA-GTTTGAAGCAAACGTTTACTACATGAATCAGTGGTT 185
Query 186 AGGAGCTGTTCCCATGCCGTTGTTCTACCTT-GGAAGCAAGAACACGATGCTTCTCAGAG 244
|||||| ||||||||||||| |||||| ||| |||||||| ||||||| ||||||||||
Sbjct 186 AGGAGCGGTTCCCATGCCGTCGTTCTA-CTTGGGAAGCAAAAACACGACACTTCTCAGAG 244
Query 245 CATTGTTTGAAGGCCAAACTCTAGTTTTACTAAAGGGTAATGAACGCAAAAAGTTTGAAG 304
|||||||||||||| |||||| |||||||||| | ||| ||| |||||||||||||||||
Sbjct 245 CATTGTTTGAAGGCAAAACTCCAGTTTTACTAGACGGTGATGGACGCAAAAAGTTTGAAG 304
Query 305 ATGATCAGAAGACTGGTGTTTATAGAATTGACGTGAAGCTGAGTATTAATTTTAGGGTTA 364
|||||| ||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 305 ATGATCGGAACACTGGGGTTTACAGAATCGACGTGAAGCTGAGTATTAATTTTAGGGTTA 364
Query 365 TGGTTTTGCATTTAGTCACGTGGCCGATGAAACCAGTTGTTCGTTGTCATCT-TAAGATA 423
|||||||||||||||| |||||||||||||||||| |||| |||||| |||| ||| ||
Sbjct 365 TGGTTTTGCATTTAGTAACGTGGCCGATGAAACCAATTGTACGTTGTTATCTCAAAG-TA 423
Query 424 CCATTAGCATTAGGTTCCTCTAACTCAACCGGAGGGCACAAGAAAATG-TTACTTATTGG 482
|||||||||||||||||||||||||||| | ||| ||||||| || | |||| ||||||
Sbjct 424 CCATTAGCATTAGGTTCCTCTAACTCAA-C--AGGACACAAGACAA-GATTACATATTGG 479
Query 483 TCAACTGGTAAAAGATACTTCTGCAAATCTTAGGGAAGCTAGTGAAACCGATCATCGTCG 542
||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 480 GCAATTGGTAAAAGATACTTCTGCAAAACTTAGGGAAGCTAGTGAAACCGATCATGGTAA 539
Query 543 AGATGTTGCTCAAAGTAAGAAGATTGCAGATGCTAAACTTGCAAAGGATTTTGAAGCAGC 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGATGTTGCTCAAAGTAAGAAGATTGCAGATGCTAAACTTGCAAAGGATTTTGAAGCAGT 599
Query 603 GTTGAAAGAGTTTCAGAAAGCACAGCATATTACAGTTGAAAGAGAAACTTCTTATATTCC 662
||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| | |||
Sbjct 600 GTTGAAAGAGTATCAGAAAGCACAGCATATTGCAGCTGAAAGAGAAACTTCTTACACTCC 659
Query 663 TTTTGATCCAAAAGGTAGCTTTTCTTCAAGTGAGGTAGACATTGGCTATGATAGATCACA 722
|||||||||||||| | | |||||||| | ||||||| ||||||||||||||||||||
Sbjct 660 TTTTGATCCAAAAGCCAACCTTTCTTCA-G--AGGTAGAGATTGGCTATGATAGATCACA 716
Query 723 AGAGCAGCGTGTCCTCATGGAATCTAGAAGGCAAGAAATTGTGTTGCTTGACAACGAAAT 782
||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 717 AGAGCAGCGTGTCCTCATGGAATCTAG--G-CAAGAAGTTGTGTTGCTTGACAACGAAAT 773
Query 783 TTCCTTAAACGAAGCACG-GATAGAGGCAAGGGAACAGGGGATACAGGAAGTTAAGCATC 841
|||||| |||||||| | ||| |||| ||| |||||||| |||||||||||| |||| |
Sbjct 774 TTCCTTCAACGAAGCG-GTGATTGAGGAAAGAGAACAGGGAATACAGGAAGTTGAGCAGC 832
Query 842 AAATCAGTGAAGTAATGGAGATGTTCAAAGATCTGGCGGTGATGGT-AGACCATCAAGGA 900
||||| ||||||||| || || ||||||||||| |||||| |||| | || ||||||||
Sbjct 833 AAATCGGTGAAGTAAACGATATTTTCAAAGATCTTGCGGTGTTGGTTA-ACTATCAAGGA 891
Query 901 -ACGATCGAT-GATATAGATGAGA-AGATCGACAATTTACGTTCAGCAGCAGCTCAGGGA 957
|| || || ||||||| | || | ||||||||| || ||||||| |||||||||||
Sbjct 892 GAC-ATA-ATCGATATAGGT-AGCCATATCGACAATGCACATTCAGCAACAGCTCAGGGA 948
Query 958 AAGTCCCATCTCGTGAAAGCATCCAATACACAAGGATCAAACTCATCCCTG 1008
|||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 949 AAGTCCCATCTCGTGAAAGCCTCCAAGACACAACGATCAAACTCATCCCTG 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5