BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G32280.1

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg336313 jgi|Araly1|336313|fgenesh1_pg.C_scaffold_1002878           532    4e-151


> Ahg336313 jgi|Araly1|336313|fgenesh1_pg.C_scaffold_1002878
Length=339

 Score =  532 bits (288),  Expect = 4e-151
 Identities = 322/339 (95%), Gaps = 0/339 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGAAGCAAATATTTTGTCAATTCTTAGTCGTAATGATGTTATTGTCATCATCTCAA  60
            ||||| ||||| || |||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct  1    ATGGACAAGCACATCTTTTGTCAATTCTTAGTCCTAATGATGTTAATGTCATCATCCCAA  60

Query  61   ATTCAGGGAGATTTGAGGAAAGGATGTTATGATTTAGGGATCACAGTTTTGATGGGTTGT  120
            ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct  61   ATTCAGGGAGAGTTGAGGAAAGGATGTTATGATTCAGGCATCACAGTTTTGATGGGTTGT  120

Query  121  CCAGATTCTATTGACAAGAAGCTTCCAGCTCCTCCGACACCATCCGAAGGTTGTTGCACT  180
            || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCTGATTCGATTGACAAGAAACTTCCAGCTCCTCCGACACCATCCGAAGGTTGTTGCACT  180

Query  181  CTTGTCCGAACCATCGGAATGAAATGTGTATGTGAAATCGTCAACAAGAAAATCGAAGAC  240
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  CTTGTCCGAACCATTGGAATGAAATGTGTATGTGAAATCGTCAATAAGAAAATCGAAGAC  240

Query  241  ACCATTGATATGCAAAAGCTCGTCAATGTCGCCGCAGCTTGTGGTCGTCCCCTTGCTCCT  300
            ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  241  ACCATTGATATGCAAAAGCTCGTCAATGTCGCCGCAGCTTGTGCTCGTCCTCTTGCTCCT  300

Query  301  GGTTCACAATGCGGAAGTTACCGAGTTCCTGGTGCATGA  339
            ||||||||||||||||||||| |||||||||||||||||
Sbjct  301  GGTTCACAATGCGGAAGTTACAGAGTTCCTGGTGCATGA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12019010535


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5