BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32300.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313803 jgi|Araly1|313803|fgenesh1_pm.C_scaffold_1002583 2658 0.0
Ahg917344 jgi|Araly1|917344|Al_scaffold_0008_2095 1882 0.0
Ahg322327 jgi|Araly1|322327|fgenesh1_pm.C_scaffold_4002384 1033 0.0
Ahg887421 jgi|Araly1|887421|Al_scaffold_0994_1 209 5e-53
Ahg935659 jgi|Araly1|935659|scaffold_403647.1 167 3e-40
> Ahg313803 jgi|Araly1|313803|fgenesh1_pm.C_scaffold_1002583
Length=1911
Score = 2658 bits (1439), Expect = 0.0
Identities = 1612/1696 (95%), Gaps = 9/1696 (1%)
Strand=Plus/Plus
Query 1 ATGGCATTTTGGTTAAGTTTGATATTTTTC---TGCTTTTGCACATTTGCATCCTCAACT 57
|||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||
Sbjct 1 ATGGCATTTTGGTTAAGTTTGATATTTTTCTTTTGCTTTTTCACATTTGCTTCCTCAACT 60
Query 58 CCACCGGATGATCCGGTCAAGTGTGAGTCAGGAAACAACATGTGCACTGTGACGAACTCG 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCACCGGATGATCCGGTCAAGTGTGAGTCAGGAAACAACATGTGCACTGTGACGAACTCG 120
Query 118 TACGGAGCCTTCCCCGACCGTTCTATATGTGAAGCGGCAAAGGTGGAGTACCCCAAGACC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TACGGAGCCTTCCCCGACCGTTCTATATGTGAAGCGGCAAAGGTGGAGTACCCTAAGACC 180
Query 178 GAGGCTGAGTTAGTCTCTATAGTGGCTGCAGCCACTAGAGCCGGCCAAAAAGTGCGGGTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GAGGCTGAGTTAGTCTCTATAGTGGCTGCAGCCACTAGAGCCGGCCAAAAAATGCGGGTC 240
Query 238 GTGACTCGGTACGT-TCACAGCATCCCAAAGCTCGTTTGTACTGATGGAAAGGACGGTGT 296
|||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 241 GTGACTCGGTAC-TCTCACAGCATCCCAAAGCTCGTTTGCACTGACGGAAAGGACGGGGT 299
Query 297 TCTCATAAGCACCAAGTTTTTAAACAACGTGGTGGGAACCAATCCCGAAGCCAAGACTTT 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 TCTCATAAGCACCAAGTTTTTAAACAACGTGGTGGGAACCAACCCCGAAGCCAAGACTTT 359
Query 357 GACAGTTGAGAGCGGTGTGACGTTAAGGCAGCTTATCGGAGAAGCGGCTGAATTGGAGCT 416
||||||||||||||| |||||| |||||||||| ||||||||||| ||||| ||||||||
Sbjct 360 GACAGTTGAGAGCGGCGTGACGCTAAGGCAGCTGATCGGAGAAGCCGCTGAGTTGGAGCT 419
Query 417 GGCTTTGCCACACGCACCATATTGGTGGGGACTCACGGTTGGAGGATTGATGGGGACAGG 476
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 CGCTTTACCATACGCACCGTATTGGTGGGGACTCACGGTTGGAGGATTGATGGGGACGGG 479
Query 477 TGCTCATGGAAGTTCGTTGTGGGGTAAAGGAAGTGCGGTTCATGATTATGTGAGTGAGAT 536
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TGCTCACGGAAGCTCGTTGTGGGGTAAAGGAAGTGCGGTTCATGATTATGTGAGCGAGAT 539
Query 537 AAGAATGGTGAGTCCCGGTTTGGCTTCTGATGGGTATGTTAAGGTTCGGGTTCTTAGCGA 596
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AAGAATGGTGAGTCCCGGTTTGGCTTCTGATGGGTATGTAAAGGTTCGGGTTCTTAGCGA 599
Query 597 GACAATAGATCCTGATGAATTTCGTGCAGCCAAAGTTTCTCTAGGCGTTCTAGGTGTTAT 656
||| || ||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 600 GACTATGGATCCTGATGAATTTTGTGCGGCCAAAGTTTCTCTAGGCGTTCTAGGTGTTAT 659
Query 657 CTCTCAAGTAACTTTCCAGTTGCAACCAATGTTCAAGAGATCGTTAACCTTTGTTATGCA 716
||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||
Sbjct 660 CTCTCAAGTAACTTTCCAGTTGCAACCGATGTTCAAGAGATCGTTGACGTATGTTATGCA 719
Query 717 AAACGATTCGGATTTCGGAGATCAAGCCGTGACTTTCGGGGAAAAACATGAGTTTGCAGA 776
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 AAACGATTCGGATTTCGGAGATCAAGCCGTGACTTTTGGGGAAAAACATGAGTTTGCAGA 779
Query 777 TTTCTTATGGTTACCAAGCCAAGGCAAAGTGGTGTATCGAATGGACGACCGAGTTCCGGT 836
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 780 TTTCTTATGGTTACCGAGCCAAGGCAAGGTGGTGTATCGAATGGACGACCGAGTTCCTCT 839
Query 837 CAACACTTCAGGCAATGGCTTGTTCGACTTTTTCCCATTCCGTCCACAACTCTCTGTAGC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CAACACTTCAGGCAATGGCTTGTTCGACTTTTTCCCATTCCGTCCACAACTCTCTGTAGC 899
Query 897 GTTAGCCATCATTAGATCCTTAGAGGAGAGTGAAGAGTCATCCGGAGATGCAAACGACAA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 900 GTTAGCCATCATTAGATCCTTAGAGGAGAGTGAAGAGTCATCCGGAGATGCAAACAAGAA 959
Query 957 GTGTGCGAGAGCAGAGCAAATAACGTCGTTTTTGTTTTCCATCTCCTACGGTGTGACTAA 1016
||||| ||||||||||||| || |||||||||||||||| ||||| ||||||||||||||
Sbjct 960 GTGTGTGAGAGCAGAGCAATTATCGTCGTTTTTGTTTTCAATCTCATACGGTGTGACTAA 1019
Query 1017 CAATGGTATGGAATTCACAGGCTATCCGGTGATCGGAAAGCAAAACCATATGATGTCGTC 1076
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1020 CAATGGTATGGAATTCACAGGCTATCCGGTAATCGGAAAGCAAAACCGTATGATGTCGTC 1079
Query 1077 GGGTACATGTCTAGACAGCCATCAGGACGGACTGATCACGTCTTGTCCTTGGGATCCACG 1136
|||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||
Sbjct 1080 GGGTACATGTCTAGACAGCCATTGGGACGGACTGATCACTTCTTGTCCGTGGGATCCACG 1139
Query 1137 GATAAAAGGCCAATTCTTTCACCAAACAGCATTCAGTATCCCTCTCACACGTGTCAAAGG 1196
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 1140 GATAAAAGGCCAATTCTTTCACCAAACAGCATTCAGTGTTCCACTCACACGTGTCAAAGG 1199
Query 1197 TTTCATCAACGACATCAAAGCACTCGTAAAGATTGAACCGAAATCTCTCTGCGCCCTTGA 1256
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1200 TTTCATCGACGACATCAAAGCACTCGTAAAGATTGAACCGAAAGCTCTCTGCGTCCTTGA 1259
Query 1257 ACGCAGCAATGGTATCCTCATCCGTTATGTGACATCCTCTCCTGCTTTTCTTGGGAAAGA 1316
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 ACGCAGCAATGGTATTCTCATCCGTTATGTCACATCCTCTCCTGCTTTTCTTGGGAAAGA 1319
Query 1317 AGAAAAAGCTTTAGATTTTGACCTAACTTACTACCGAAGCAAAGATGATCCCTT-AGCAC 1375
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1320 GGAAAAAGCTTTAGACTTTGACCTAACTTACTACCGAAGCAAAGATGATCCCTTGA-CAC 1378
Query 1376 CACGTCTCTACGAGGATTTCATCGAAGAGATCGAACAAATGGCGATATTTAAATACAATG 1435
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1379 CGCGTCTCTACGAGGATTTCATCGAAGAAATCGAACAAATGGCGATATTTAAATACAACG 1438
Query 1436 CATTGCCACATTGGGGGAAGAATAGGAACCTAGCGTTTGATGGCGTGATTAGAAAGTACA 1495
| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1439 CGCTGCCACATTGGGGGAAGAATAGGAACCTAGCTTTTGATGGCGCGATTAGAAAGTACA 1498
Query 1496 AGAACGCAAACACGTTTTTGAAAGTAAAAGAGAGATTTGATCCTTTAGGGTTGTTTTCGA 1555
||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1499 AGAACGCAAACGCGTTTTTGAAAGTAAAAGAGAGATTTGATCCATTAGGGCTGTTTTCGA 1558
Query 1556 CGGAATGGACCAACCAAATTCTAGGTTTAAAAGGAAACGTGACGATTGTGAAAGAAGGAT 1615
| ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1559 CAGAATGGACCGATCAAATTCTAGGTTTAAAAGGAAACGTTACGATTGTGAAAGAAGGAT 1618
Query 1616 GTGC-CTTGGAAGGACTTTGTGTTTGTTCGGATGATGCTCATTGTGCTCCCAAGAAAGGT 1674
|||| |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1619 GTGCACTTG-AAGGACTGTGTGTTTGTTCGGATGATGCTCATTGTGCTCCCAACAAAGGT 1677
Query 1675 TATTTGTGTCGACCAG 1690
||||||||||||||||
Sbjct 1678 TATTTGTGTCGACCAG 1693
> Ahg917344 jgi|Araly1|917344|Al_scaffold_0008_2095
Length=1737
Score = 1882 bits (1019), Expect = 0.0
Identities = 1511/1747 (86%), Gaps = 39/1747 (2%)
Strand=Plus/Plus
Query 1 ATGGCATTTTGGTTAAGTTTGATATTTTTCTGCTTTTGCACATTTGCATCCTCAACTCCA 60
||||| |||||| | |||||| || ||| || |||| ||||||||| ||||| |||||
Sbjct 1 ATGGCTTTTTGGCTCAGTTTG--ATCTTT-TGTTTTTTCACATTTGCTTCCTCGACTCCT 57
Query 61 CCGGATGATCCGGTCAAGTGTGAGTCAGGAAACAACA-TGTGCACTGTGACGAACTCGTA 119
|| ||||||| |||||||| ||||| |||||| ||| | ||||| ||||||||||||||
Sbjct 58 CCCCATGATCCTGTCAAGTGCGAGTCCGGAAAC-ACAGTATGCACGGTGACGAACTCGTA 116
Query 120 CGGAGCCTTCCCCGACCGTTCTATATGTGAAGCGGCAAAGGTGGAGTACCCCAAGACCGA 179
||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||
Sbjct 117 CGGAGCCTTTCCCGACCGTTCTTTATGTGAAGCAGCAAAGGTGGAGTACCCAAAGACCGA 176
Query 180 GGCTGAGTTAGTCTCTATAGTGGCTGCAGCCACTAGAGCCGGCCAAAAAGTGCGGGTTGT 239
||||||| | |||||| | || |||||||| |||| |||||| |||||| ||||||| ||
Sbjct 177 GGCTGAGCTGGTCTCTGTGGTTGCTGCAGCAACTAAAGCCGGTCAAAAAATGCGGGTCGT 236
Query 240 GACTCGGTACGT-TCACAGCATCCCAAAGCTCGTTTGTACTGATGG-AAAGGACGGTG-T 296
|||||||||| | ||| |||||||||||| | ||||| |||||||| ||| ||||| | |
Sbjct 237 GACTCGGTAC-TCTCATAGCATCCCAAAGTTGGTTTGCACTGATGGCAAA-GACGG-GAT 293
Query 297 TCTCATAAGCACCAAGTTTTTAAACAACGTGGTGGGAACCAATCCC-GAAGCCAAGACTT 355
||||||||||||||||||| || || |||||||| ||||||| ||| || ||||||||||
Sbjct 294 TCTCATAAGCACCAAGTTTCTAGACCACGTGGTGCGAACCAA-CCCGGATGCCAAGACTT 352
Query 356 TGACAGTTGAGAGCGGTGTGACGTTAAGGCAGCTT-ATCGGAGAAGCGGCTGAA-TTGGA 413
|||| ||||||||||| |||||| |||||||| || |||| |||||||||| || |||||
Sbjct 353 TGACGGTTGAGAGCGGCGTGACGCTAAGGCAG-TTGATCGAAGAAGCGGCT-AAGTTGGA 410
Query 414 GCTGGCTTTGCCACACGCACCATATTGGTGGGGACTCACGGTTGGAGGATTGATGGGGAC 473
||| ||||||||| ||||||| |||||||||||||| || ||||||||| ||||||||||
Sbjct 411 GCTAGCTTTGCCATACGCACCTTATTGGTGGGGACTTACTGTTGGAGGAATGATGGGGAC 470
Query 474 AGGTGCTCATGGAAGTTCGTTGTGGGGTAAAGGAAGTGCGGTTCATGATTATGTGAGTGA 533
||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||
Sbjct 471 AGGTGCTCACGGAAGTTCATTGTGGGGTAAAGGAAGTGCGGTTCATGATTACGTGACCGA 530
Query 534 GATAAGAATGGTGAGTCCCGGTTTGGCTTCTGATGGGTATGTTAAGGTTCGGGTTCTTAG 593
||||||||||||||||||||||| || |||||| |||||||| || ||||||| ||||||
Sbjct 531 GATAAGAATGGTGAGTCCCGGTTCGGTTTCTGAAGGGTATGTGAAAGTTCGGGATCTTAG 590
Query 594 CGAGACAATAG-ATCCTGATGAATTTCGTGCAGCCAAAGTTTCTCTAGGCGTTCTAGGTG 652
||| || | ||||||| |||||| |||||||||||||||| |||||||||| ||||
Sbjct 591 TGAGGTTAT-GAATCCTGAAGAATTTAATGCAGCCAAAGTTTCTTTAGGCGTTCTTGGTG 649
Query 653 TTATCTCTCAAGTAACTTTCCAGTTGCAACCAATGTTCAAGAGATCGTTAACCTTTGTTA 712
|||||||||| ||||||||| || ||||||| |||||||||||||||||||| | || |
Sbjct 650 TTATCTCTCAGGTAACTTTCAAGCTGCAACCGATGTTCAAGAGATCGTTAACGTATGAGA 709
Query 713 TGCAAAACGATTCGGATTTCGGAGATCAAGCCGTGACTTTCGGGGAAAAACATGAGTTTG 772
|| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TGAAAAATGATACGGATTTCGGAGATCAAGCCGTGACTTTCGGGGAAAAACATGAGTTTG 769
Query 773 CAGATTTCTTATGGTTACCAAGCCAAGGCAAAGTGGTGTATCGAATGGACGACCGAGTTC 832
| |||||| ||||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 770 CGGATTTCCTATGGTTACCAAGCCAAGGCAAAGTGGTGTATCGAATTGATGATCGCGTTC 829
Query 833 CGGTCAACACTTCAGGCAATGGCTTGTTCGACTTTTTCCCATTCCGTCCACAACTCTCTG 892
| | |||| ||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 830 CTGCCAACGTTTCAGGCAATGGCTTGTTCAATTTTTTCCCATTCCGTTCACAACTCTCTG 889
Query 893 TAGC-GTTAGCCATCATTAGATCCTTAGAGGAGAGTGAAGAGTCATCCGGAGATGCAAAC 951
| || || |||||||| |||||| ||||||||| ||| ||||| || || || ||||||
Sbjct 890 TGGCTGT-AGCCATCAGCAGATCCATAGAGGAGAATGAGGAGTCGTCGGGTGAGGCAAAC 948
Query 952 GACAAGTGTGCGAGAGCAGAGCAAATAACGTCGTTTTTGTTT-TCCATCTCCTACGGTGT 1010
| ||||||| ||||||| ||| | || | || ||||||||| || ||||| ||||||||
Sbjct 949 AAGAAGTGTGTGAGAGCAAAGCGACTAGCATCATTTTTGTTTGTC-ATCTCATACGGTGT 1007
Query 1011 GACTAACAATGGTATGGA-ATTCACAGGCTATCCGGTGATCGGAAAGCAAA-ACC-ATAT 1067
||| || ||||| | | ||||||||||||||| || ||||||| || || ||| | ||
Sbjct 1008 GACCAATAATGGCGTT-ATATTCACAGGCTATCCCGTTATCGGAA-GCCAAGACCGA-AT 1064
Query 1068 GATGTCGTCGGGTACATGTCTAGACAGCCATCAGGA-CGGACTGATCACGTCTTGTCCTT 1126
||||||||| ||| ||||||||||||| |||| ||| |||| |||| || ||||||||||
Sbjct 1065 GATGTCGTCCGGTGCATGTCTAGACAGTCATC-GGAACGGATTGATTACATCTTGTCCTT 1123
Query 1127 GGGATCCACGGATAAAAGGCCAATTCTTTC-ACCAAACAGCATTCAGTATCCCTCTCACA 1185
|||||||||| || | |||| | || |||| ||||||||||||| ||| | |||||||||
Sbjct 1124 GGGATCCACGCATTAGAGGCGAGTT-TTTCTACCAAACAGCATTAAGTGTTCCTCTCACA 1182
Query 1186 CGTGTCAAAGGTTTCATCAACGACATCAAAGCACTCGTAAAGATTGAACCGAAATCTCTC 1245
| |||||||| |||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1183 CATGTCAAAGATTTCATCAACGACATCAAAGCACTTGTGAAGATTGAACCAAAATCTCTC 1242
Query 1246 TGCGCCCTTGAACGCAGCAATGGTATCCTCATCCGTTATGTGACATCCTCTCCTGCTTTT 1305
|||| |||||||| || | ||||| | || ||||||||||| |||||||||||||||| |
Sbjct 1243 TGCGGCCTTGAACTCAACTATGGTGTTCTAATCCGTTATGTCACATCCTCTCCTGCTTAT 1302
Query 1306 CTTGGGAAAGAAGAAAAA-GCTTTAGATTTTGACCTAACTTACTACCGAAGCAAAGATGA 1364
|| ||||||||||||||| | |||||| |||||||||||||||||| |||||||||||||
Sbjct 1303 CTAGGGAAAGAAGAAAAAAG-TTTAGACTTTGACCTAACTTACTACAGAAGCAAAGATGA 1361
Query 1365 TCCCTT-AGCACCACGTCTCTACGAGGATTTCATCGAAGAGATCGAACAAATGGCGATAT 1423
||| || | ||||||||||||||||||||| ||| ||||||||||| |||||||| |||
Sbjct 1362 TCCTTTGA-CACCACGTCTCTACGAGGATTACATGGAAGAGATCGAGCAAATGGCAATAC 1420
Query 1424 TTAAATACAATGCATTGCCACATTGGGGGAAGAATAGGAACCTAGCGTTTGATGGCGTGA 1483
| |||||||| || ||||| ||||||||||| || ||||||||||| |||||||| | |
Sbjct 1421 TGAAATACAACGCGTTGCCTCATTGGGGGAAAAACAGGAACCTAGCATTTGATGGTGCCA 1480
Query 1484 TTAGAAAGTACAAGAACGCAAACACGTTTTTGAAAGTAAAAGAGAGATTTGATCCTTTAG 1543
||||||| ||||||||||||||| ||||||||||||| || || ||||| ||||| |
Sbjct 1481 TTAGAAATTACAAGAACGCAAACGCGTTTTTGAAAGTCAAGGATAGATTAGATCCGTCCC 1540
Query 1544 GGTTGTTTTCGACGGAATGGACCAACCAAATTCTAGGTTTAAAAGGAAACGTGACGATTG 1603
| |||||||| || ||||||||| | || |||||||||||||||||||||||||||||||
Sbjct 1541 GATTGTTTTCTACAGAATGGACCGATCAGATTCTAGGTTTAAAAGGAAACGTGACGATTG 1600
Query 1604 TGAAAGAAGGATGTGCCTTGGAAGGACTTTGTGTTTGTTCGGATGATGCTCATTGTGCTC 1663
||||| |||||||||| |||||||| |||||| |||||||||| ||| ||||||||||||
Sbjct 1601 TGAAACAAGGATGTGCATTGGAAGGGCTTTGTATTTGTTCGGAGGATTCTCATTGTGCTC 1660
Query 1664 CCAAGAAAGGTTATTTGTGTCGACCAGGTAAAGTTTATACA-AAGGCTAGAGTTTGTACT 1722
| || ||||||||| |||||||||| ||||||||||||| | ||| |||| |||||||||
Sbjct 1661 CAAACAAAGGTTATATGTGTCGACCTGGTAAAGTTTATAGAGAAG-CTAGGGTTTGTACT 1719
Query 1723 CATGTAA 1729
| |||||
Sbjct 1720 CTTGTAA 1726
> Ahg322327 jgi|Araly1|322327|fgenesh1_pm.C_scaffold_4002384
Length=1812
Score = 1033 bits (559), Expect = 0.0
Identities = 1344/1714 (78%), Gaps = 89/1714 (5%)
Strand=Plus/Plus
Query 51 CTCAACTCCACCGGATGATCCGGTCAAGTGTGAGTCAGGAAACAAC-ATGTGCACTGTGA 109
|||||| ||||| || ||||| ||||| |||| ||| |||||| || | || || || |
Sbjct 102 CTCAACACCACCCGAAGATCCTGTCAAATGTGTGTCGGGAAAC-ACGAACTGTACAGTCA 160
Query 110 CGAACTCGTACGGAGCCTTCCCCGACCGTTCTATATGT-GAAGCGGCAAAGGTGG-AGTA 167
| ||||| || |||| ||| || |||||||| | ||| | ||| || || |||| | ||
Sbjct 161 CAAACTCATATGGAGTCTTTCCAGACCGTTCCACGTGTCG-AGCCGCCAATGTGGCA-TA 218
Query 168 CCCCAA-GACCGAGGCTGAG-TTAGTCTCTATAGTGGCTGCAGCCACTAGAGCC-GGCCA 224
||||| ||||| || ||| ||| ||||| | |||||||||||||||| |||| |||
Sbjct 219 -CCCAACAACCGAAGCCGAGCTTA-TCTCTGTCGTGGCTGCAGCCACTAAAGCCGGGCGG 276
Query 225 AAAAGTGCGGGT-TGTGACTCGGTACGTT--CACAGCATCCCAAAGCTCGTTTGTACTGA 281
|||| |||| || | ||||| || || || |||||| | ||||| || ||||| ||
Sbjct 277 AAAA-TGCGTGTAACT-ACTCGATA--TTCCCATAGCATCACTAAGCTTGTGTGTACGGA 332
Query 282 TGGAAAGGACGGTGTT-CTCATAAGCACCAAGTTTTTAAACAACGTGGTGGGAACCAATC 340
|| | |||||| || |||||||| || |||||| ||||| || |||| || || ||
Sbjct 333 CGGGACCGACGGT-TTGCTCATAAGTACAAAGTTTCTAAACCACACGGTGCGAGCCGAT- 390
Query 341 CCGAA-GCCAAGACTTTGACAGTTGAGAGCGGTGTGACG-TTAAGGCAGCTT-ATCGGAG 397
|||| |||| ||| ||||| |||||||| || ||||| || ||||| || |||| |
Sbjct 391 GCGAAGGCCATGACCTTGACGGTTGAGAGTGGCATGACGCTT-AGGCA-ATTAATCGCTG 448
Query 398 AAGCGGCTG-AATTGGAGCTGGCTTTGCCACACGCACCATATTGGTGGGGACTCACGGTT 456
||||||||| ||||||| |||| ||||| | ||||| |||||||||||||| || ||
Sbjct 449 AAGCGGCTGAAATTGGA-ATGGCGTTGCCTTATGCACCGTATTGGTGGGGACTAACCGTG 507
Query 457 GGAGGAT-TGATGGGGACAGGTGCTCATGGAAGTTCGTTGTGGGGTAAAGGAAGTGCGGT 515
|| || | |||||||||| |||||||| || || || |||||||||||||||||||||||
Sbjct 508 GGTGG-TATGATGGGGACCGGTGCTCACGGGAGCTCATTGTGGGGTAAAGGAAGTGCGGT 566
Query 516 TCATGATTATGTGAGTGAGATAAGAATGGTGAGTCCCGGTTTGG-CTTCTGATGGGTATG 574
||||||||||||| ||||| || ||||| ||||| |||| || | | ||| |||| ||
Sbjct 567 CCATGATTATGTGACCGAGATCAGGATGGTTAGTCCTGGTTCGGTCAT-TGACGGGTTTG 625
Query 575 TTAAGGTTCGGGTTCTT-AGCGAGACAAT-AGA-TCCTGATGAATTTCGTGCAGCCAAAG 631
|||||| | ||| || |||||||| | ||| |||| |||| ||| || || || |
Sbjct 626 CAAAGGTTAGAGTT-TTAAGCGAGAC--TGAGACTCCTAATGAGTTTAACGCGGCTAAGG 682
Query 632 TTTCTCTAGGCGTTCTAGGTGTTATCTCTCAAGTAACTTTCCAGTTGCAACCAATGTTCA 691
||||||| |||||||| || ||||||||||| |||||||| | |||||||| |||||||
Sbjct 683 TTTCTCTTGGCGTTCTTGGCGTTATCTCTCAGGTAACTTTTAAATTGCAACCGATGTTCA 742
Query 692 AGAGATCGTTAACCTTTGTTATGCAAAACGATTCGGATTTCGGAGATCAAGCCGTGAC-T 750
||||||| ||| | ||| ||| |||| ||||||||||| || ||||||||||| || |
Sbjct 743 AGAGATCACTAAGGTATGTCATGAAAAATGATTCGGATTTTGGGGATCAAGCCGTAACAT 802
Query 751 TTCGGGGAA-AAACATGAGTTTGCAGATTTCTTATGGTTACCAAGCCAAGGCAAAGTGGT 809
|| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 803 TT--GGGAAGAAACATGAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGT 860
Query 810 GTATCGAATGGACGACCGAGTTCCGGTCAACACTTCAGGCAATGGCTTGTTCGACTTTT- 868
||||||||||||||||||||| |||||||||| ||||| || || ||| |||| |||
Sbjct 861 GTATCGAATGGACGACCGAGTAGCGGTCAACACCTCAGGTAACGGTTTGCTCGA-TTTCA 919
Query 869 TCCCATTCCGTCCACAACTCTCTGTAGCGTTAGCCATCATTAGATCCTTAGAGGAGA-GT 927
| | |||||| | |||||||||| || ||||||||||| ||||||| |||||||| |
Sbjct 920 TGTCGTTCCGTTCGCAACTCTCTGCCGCATTAGCCATCATAAGATCCTCAGAGGAGACGC 979
Query 928 GAAGAGTCATCCGGAGATGCAAACGACAAGTGTGCGAGAGCAGAGCAAATAACGTCGTTT 987
||||| || | ||||||| || | || |||||| |||| | || ||| |||| |
Sbjct 980 -AAGAGAGATTCAGAGATGCGAATGGGAAATGTGCGGGAGCC-A-CAT-TAATTTCGTCT 1035
Query 988 T---TGTTTTCCATC-TCCTACGGTGTGACTAACAATGGTATGGA-ATTCACAGGCTATC 1042
||||| | | | || |||||| |||| |||||||| ||| | ||| || || ||||
Sbjct 1036 ACACTGTTTGCTA-CATCATACGGTTTGACCAACAATGGCATG-ATATTTACTGGTTATC 1093
Query 1043 CGGTGATCGGAAAGC-AAAACCATATGATGTCGTCGGG-TACATGTCTAGACAGCCATCA 1100
|||| || |||| || |||||| |||||||||||| || | |||| |||||||| | |||
Sbjct 1094 CGGTTATTGGAA-GCCAAAACCGTATGATGTCGTCAGGAT-CATGCCTAGACAGTCTTCA 1151
Query 1101 GGACGGACTGATCAC-GTCTTGTCCTTGGGATCCACGGATAAAAGGCCAATTCTTTCACC 1159
|| ||| | ||||| | ||||||| |||||| |||| |||||| | ||||||||||||
Sbjct 1152 TGATGGATTAATCACAG-CTTGTCCATGGGATTCACGCATAAAAAGTGAATTCTTTCACC 1210
Query 1160 AAACAGCATTCAGTATCCCTCTCACACGTGTCAAAGGTTTCATCAACGACATCAAAGCAC 1219
||||| | |||||||| || ||||| | |||||| |||||||||||||||||||| | |
Sbjct 1211 AAACAACTTTCAGTATTCCGCTCACGCAAGTCAAAAGTTTCATCAACGACATCAAATCTC 1270
Query 1220 TCGTAAAGATTGAACCGAAATCTCTCTGCGCCCTTGAACGC-AGCAATGGTATCCTCATC 1278
| || ||||| || |||||||||| || | ||||| | | | | ||||||| || ||
Sbjct 1271 TTGTCAAGATAGAGTCGAAATCTCTATGTGGACTTGAGCTCTA-CTATGGTATTCTAATG 1329
Query 1279 CGTTATGTGACATCCTCTCCTGCTTTTCTTGGGAAAGAAGAAA-AAGCTTTAGATTTTGA 1337
|||||||| ||||| ||||| || | ||| ||||||||| | | |||||||||| |||||
Sbjct 1330 CGTTATGTCACATCTTCTCCGGCCTATCTCGGGAAAGAA-ACAGAAGCTTTAGACTTTGA 1388
Query 1338 CCTAACTTACTACCGAAGC-AAAGATGATCCCTTAGCACCACGTCTCTACGAGGATTTCA 1396
||| || || |||||| || ||| | |||| |||||||| || || ||||| ||||| |
Sbjct 1389 CCTCACGTATTACCGA-GCCAAA-A--ATCCGTTAGCACCGCGACTATACGAAGATTTTA 1444
Query 1397 TCGAAGAGATCGAACAAATGGCGATATTTAAATACAATGCATTGCCACATTGGGGGAAGA 1456
| ||||| ||||| ||||| ||| | || || || || || ||||| |||||||| ||||
Sbjct 1445 TAGAAGAAATCGAGCAAATTGCGTTGTTCAAGTATAACGCCTTGCCGCATTGGGGTAAGA 1504
Query 1457 ATAGGAACCTAGCGTTTGATGGCGTGATTAGAAAGTACAAGAACG--CAAACACGTTTTT 1514
| || || ||||||||||||| ||||||| |||||||||||||| | || || ||
Sbjct 1505 ACAGAAATTTAGCGTTTGATGGAGTGATTAAAAAGTACAAGAACGTGCCGGCA--TTCTT 1562
Query 1515 GAAAGTAAAAGAGAGATTTGATCCTTTAGGGTTGT-TT-TCGACG-GAATGGACCAACCA 1571
||||| ||||| || | |||||| | ||||| | || || | | ||||||||||| ||
Sbjct 1563 CAAAGTTAAAGAAAGCTATGATCCAAT-GGGTT-TATTCTCAA-GTGAATGGACCAATCA 1619
Query 1572 AATTCT-AGGTTTAAAAGGAAACGTGACGATTGTGAAAGAAGGATGTGCCTTGGAAGGAC 1630
|| || ||| |||||||||| |||||||| | ||||| |||||||| || || ||
Sbjct 1620 GAT-CTTAGGAATAAAAGGAAATGTGACGATAATAAAAGATGGATGTGCATTAGAGGG-- 1676
Query 1631 TTTGTGT-T-TGTTCGGATGATGCTCATTGTGCTCCCAAGAAAGGTTATTTGTGTCGACC 1688
||||||| | |||||||| ||||| ||||||||||| | ||||| ||||||||||||||
Sbjct 1677 TTTGTGTATATGTTCGGAGGATGCACATTGTGCTCCGACCAAAGGATATTTGTGTCGACC 1736
Query 1689 AGGTAAAGTTTATACA-AAGGCTAGAGTTTGTAC 1721
||| ||||| || | | ||| ||||||| |||||
Sbjct 1737 AGGAAAAGTCTACATAGAAG-CTAGAGTATGTAC 1769
> Ahg887421 jgi|Araly1|887421|Al_scaffold_0994_1
Length=894
Score = 209 bits (113), Expect = 5e-53
Identities = 175/204 (86%), Gaps = 7/204 (3%)
Strand=Plus/Plus
Query 692 AGAGATCGTTAACCTTTGTTATGCAAAACGATTCGGATTTCGGAGATCAAGCCGTGACTT 751
||||||| |||| | | |||| |||| ||||||||||||| |||||||||||||||||
Sbjct 686 AGAGATCACTAACATATACTATGAAAAATGATTCGGATTTCGAAGATCAAGCCGTGACTT 745
Query 752 TCGGGGAA-AAACATGAGTTTGCAGATTTCTTATGGTTACCAAGCCAAGGCAAAGTGGTG 810
| || || ||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 746 T-TGGAAAGAAACACGAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGTG 804
Query 811 TATCGAATG-GACGACCGAGTTCCGGTCAACACTTCAGGCAATGGCTTGTTCGACTTTTT 869
||||||| | || ||| |||| || |||||||| || |||||||| |||||||| |||||
Sbjct 805 TATCGAA-GAGATGAC-GAGTACCCGTCAACACATCGGGCAATGGTTTGTTCGATTTTTT 862
Query 870 -CCCATTCCGTCCACAACTCTCTG 892
||| |||||| ||||||||||||
Sbjct 863 GCCC-TTCCGTTCACAACTCTCTG 885
> Ahg935659 jgi|Araly1|935659|scaffold_403647.1
Length=1786
Score = 167 bits (90), Expect = 3e-40
Identities = 141/165 (85%), Gaps = 5/165 (3%)
Strand=Plus/Plus
Query 692 AGAGATCGTTAACCTTTGTTATGCAAAACGATTCGGATTTCGGAGATCAAGCCGTGACTT 751
||||||| |||| | | |||| |||| ||||||||||||| |||||||||||||||||
Sbjct 733 AGAGATCACTAACATATACTATGAAAAATGATTCGGATTTCGAAGATCAAGCCGTGACTT 792
Query 752 TCGGGGAA-AAACATGAGTTTGCAGATTTCTTATGGTTACCAAGCCAAGGCAAAGTGGTG 810
| || || ||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 793 T-TGGAAAGAAACAGGAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGTG 851
Query 811 TATCGAATG-GACGACCGAGTTCCGGTCAACACTTCAGGCAATGG 854
||||||| | || ||| |||| || |||||||| || ||||||||
Sbjct 852 TATCGAA-GAGATGAC-GAGTACCCGTCAACACATCGGGCAATGG 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5