BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32320.1 Length=918 Score E Sequences producing significant alignments: (Bits) Value Ahg922313 jgi|Araly1|922313|scaffold_103594.1 1258 0.0 > Ahg922313 jgi|Araly1|922313|scaffold_103594.1 Length=972 Score = 1258 bits (681), Expect = 0.0 Identities = 850/931 (91%), Gaps = 14/931 (2%) Strand=Plus/Plus Query 1 ATGACACTTGTTAGAGAACGACGTCACCAAGAACCTCTCACACTCTCTATTCCACCACTT 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 21 ATGACACTTGTTAGAGAGCGACGTCACCAAGAACCTCTCACACTCTCTATTCCACCACTT 80 Query 61 ATTTACCACGGCACCGCCTTCTCCGTGGCATCTTCTTCATCGTCAAGCCCTGAAACATCG 120 |||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 81 CTTTACCACCGCATCGCCTTCTCCGCCGCATCTTCTTCATCGTCAAGCCCTGACTCATCG 140 Query 121 CCGATTCAAACCTTAAACGATCTCGAGAAACTCTCCGTTTTAGGACAAGGAAGCGGTGGG 180 ||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 141 CCGGTTGAAACCATAAACGATCTCGAGAAACTCGCCGTTTTAGGACAAGGAAGCGGTGGG 200 Query 181 ACAGTCTACAAAACCCGTCACCGGAGAACCAAAACGCTTTACGCCTTAAAAGTCCTCCGG 240 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| || Sbjct 201 ACAGTCTACAAAACCCGTCACCGGAGAACCAAAACACTCTACGCGTTAAAAGTCCTTAGG 260 Query 241 CCAAATCTCAACA-C-C-ACG--G----TCA---CCGTCGAAGCCGACATCCTCAAGCGA 288 |||||||||||| | | ||| | || |||| |||| ||||| ||||||||| Sbjct 261 TCAAATCTCAACACCACGACGACGACAACCACCGCCGTGGAAGTAGACATTCTCAAGCGA 320 Query 289 ATCGAATCGAGTTTTATCATTAAATGCTATGCCGTTTTTGTTAGTTTATACGATCTCTGT 348 ||| |||| || ||||| | |||||||| || ||||| ||| || || |||||||||| Sbjct 321 ATCAAATCCAGCTTTATTGTCAAATGCTACGCTGTTTTCCTTAATTCATCCGATCTCTGT 380 Query 349 TTCGTGATGGAGCTTATGGAGAAAGGATCTCTCCATGACGCGTTACTTGCTCAACAAGTT 408 |||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||| Sbjct 381 TTCGTGATGGAGCTAATGGAGAAAGGATCTCTCCACGACGCATTGCTTGCTCAACAAGTT 440 Query 409 TTCTCCGAGCCAATGGTATCGAGTCTCGCTAACAGAATCCTCCAAGGGTTACGTTATCTG 468 ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 441 TTCACCGAGCCAATGATATCGACTCTCGCTAACAGAATCCTCCAAGGGTTACGTTATCTG 500 Query 469 CAAAAAATGGGAATAGTTCATGGAGACATAAAGCCTTCAAATCTCCTTATTAATAAGAAA 528 ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 501 CAAGAAATGAGAATAGTTCATGGAGACATAAAGCCTTCAAATCTCCTTATCAATAATAAA 560 Query 529 GGAGAGGTCAAGATTGCGGATTTTGGAGCAAGTAGGATAGTAGCCGGAGGAGACTATGGA 588 ||||||||||||||||| |||||||| || || ||||| ||||||||||||||||||||| Sbjct 561 GGAGAGGTCAAGATTGCAGATTTTGGTGCGAGCAGGATTGTAGCCGGAGGAGACTATGGA 620 Query 589 TCGAATGGGACATGTGCTTATATGAGTCCTGAACGTGTAGATCTAGAGAAATGGGGTTTT 648 || ||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 621 TCCAATGGTACATGTGCTTATATGAGTCCTGAACGTGTGGATCCAGAGAAATGGGGTTTT 680 Query 649 GGAGGAGAAGTTGGATTTGCAGGAGATGTGTGGTCATTAGGAGTTGTGGTTCTTGAGTGT 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 681 GGAGGAGAAGTTGGATTTGCAGGAGATGTGTGGTCATTAGGAGTTGTGGTTCTTGAGTGT 740 Query 709 TACATTGGAAGATATCCATTGACCAAAGTTGGGGATAAACCGGATTGGGCGACATT-ATT 767 ||||||||||||||||||| ||||||||||||||||||||||||||||||| | || ||| Sbjct 741 TACATTGGAAGATATCCATCGACCAAAGTTGGGGATAAACCGGATTGGGCGGCTTTGATT 800 Query 768 TTGTGCAATTTGCTGCAATGAGAAGGTGGATATTCCAGTGAGTTGTTCGTTGGAGTTTAG 827 | |||| ||||||||||||||||||||||| ||||| |||||| ||| | ||||||||| Sbjct 801 T-GTGCGATTTGCTGCAATGAGAAGGTGGAGATTCCGGTGAGTGGTTTGCCGGAGTTTAG 859 Query 828 AGATTTTGTTGGGAGATGTTTGGAGAAGGATTGGAGGAAGAGAGACACTGTGGAAGAGCT 887 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 860 AGATTTTGTTGGGAGATGTTTGGAGAAGGATTGGAGGAAGAGAGGCACTGTGGAAGAGCT 919 Query 888 TCTTCGTCATTCTTTTGTGAAAAACAGATAG 918 ||||||||||||||||||||||||||||||| Sbjct 920 TCTTCGTCATTCTTTTGTGAAAAACAGATAG 950 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34043764881 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5