BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32320.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922313 jgi|Araly1|922313|scaffold_103594.1 1258 0.0
> Ahg922313 jgi|Araly1|922313|scaffold_103594.1
Length=972
Score = 1258 bits (681), Expect = 0.0
Identities = 850/931 (91%), Gaps = 14/931 (2%)
Strand=Plus/Plus
Query 1 ATGACACTTGTTAGAGAACGACGTCACCAAGAACCTCTCACACTCTCTATTCCACCACTT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGACACTTGTTAGAGAGCGACGTCACCAAGAACCTCTCACACTCTCTATTCCACCACTT 80
Query 61 ATTTACCACGGCACCGCCTTCTCCGTGGCATCTTCTTCATCGTCAAGCCCTGAAACATCG 120
|||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 81 CTTTACCACCGCATCGCCTTCTCCGCCGCATCTTCTTCATCGTCAAGCCCTGACTCATCG 140
Query 121 CCGATTCAAACCTTAAACGATCTCGAGAAACTCTCCGTTTTAGGACAAGGAAGCGGTGGG 180
||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 141 CCGGTTGAAACCATAAACGATCTCGAGAAACTCGCCGTTTTAGGACAAGGAAGCGGTGGG 200
Query 181 ACAGTCTACAAAACCCGTCACCGGAGAACCAAAACGCTTTACGCCTTAAAAGTCCTCCGG 240
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 201 ACAGTCTACAAAACCCGTCACCGGAGAACCAAAACACTCTACGCGTTAAAAGTCCTTAGG 260
Query 241 CCAAATCTCAACA-C-C-ACG--G----TCA---CCGTCGAAGCCGACATCCTCAAGCGA 288
|||||||||||| | | ||| | || |||| |||| ||||| |||||||||
Sbjct 261 TCAAATCTCAACACCACGACGACGACAACCACCGCCGTGGAAGTAGACATTCTCAAGCGA 320
Query 289 ATCGAATCGAGTTTTATCATTAAATGCTATGCCGTTTTTGTTAGTTTATACGATCTCTGT 348
||| |||| || ||||| | |||||||| || ||||| ||| || || ||||||||||
Sbjct 321 ATCAAATCCAGCTTTATTGTCAAATGCTACGCTGTTTTCCTTAATTCATCCGATCTCTGT 380
Query 349 TTCGTGATGGAGCTTATGGAGAAAGGATCTCTCCATGACGCGTTACTTGCTCAACAAGTT 408
|||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 381 TTCGTGATGGAGCTAATGGAGAAAGGATCTCTCCACGACGCATTGCTTGCTCAACAAGTT 440
Query 409 TTCTCCGAGCCAATGGTATCGAGTCTCGCTAACAGAATCCTCCAAGGGTTACGTTATCTG 468
||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 441 TTCACCGAGCCAATGATATCGACTCTCGCTAACAGAATCCTCCAAGGGTTACGTTATCTG 500
Query 469 CAAAAAATGGGAATAGTTCATGGAGACATAAAGCCTTCAAATCTCCTTATTAATAAGAAA 528
||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 501 CAAGAAATGAGAATAGTTCATGGAGACATAAAGCCTTCAAATCTCCTTATCAATAATAAA 560
Query 529 GGAGAGGTCAAGATTGCGGATTTTGGAGCAAGTAGGATAGTAGCCGGAGGAGACTATGGA 588
||||||||||||||||| |||||||| || || ||||| |||||||||||||||||||||
Sbjct 561 GGAGAGGTCAAGATTGCAGATTTTGGTGCGAGCAGGATTGTAGCCGGAGGAGACTATGGA 620
Query 589 TCGAATGGGACATGTGCTTATATGAGTCCTGAACGTGTAGATCTAGAGAAATGGGGTTTT 648
|| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 621 TCCAATGGTACATGTGCTTATATGAGTCCTGAACGTGTGGATCCAGAGAAATGGGGTTTT 680
Query 649 GGAGGAGAAGTTGGATTTGCAGGAGATGTGTGGTCATTAGGAGTTGTGGTTCTTGAGTGT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GGAGGAGAAGTTGGATTTGCAGGAGATGTGTGGTCATTAGGAGTTGTGGTTCTTGAGTGT 740
Query 709 TACATTGGAAGATATCCATTGACCAAAGTTGGGGATAAACCGGATTGGGCGACATT-ATT 767
||||||||||||||||||| ||||||||||||||||||||||||||||||| | || |||
Sbjct 741 TACATTGGAAGATATCCATCGACCAAAGTTGGGGATAAACCGGATTGGGCGGCTTTGATT 800
Query 768 TTGTGCAATTTGCTGCAATGAGAAGGTGGATATTCCAGTGAGTTGTTCGTTGGAGTTTAG 827
| |||| ||||||||||||||||||||||| ||||| |||||| ||| | |||||||||
Sbjct 801 T-GTGCGATTTGCTGCAATGAGAAGGTGGAGATTCCGGTGAGTGGTTTGCCGGAGTTTAG 859
Query 828 AGATTTTGTTGGGAGATGTTTGGAGAAGGATTGGAGGAAGAGAGACACTGTGGAAGAGCT 887
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 860 AGATTTTGTTGGGAGATGTTTGGAGAAGGATTGGAGGAAGAGAGGCACTGTGGAAGAGCT 919
Query 888 TCTTCGTCATTCTTTTGTGAAAAACAGATAG 918
|||||||||||||||||||||||||||||||
Sbjct 920 TCTTCGTCATTCTTTTGTGAAAAACAGATAG 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5