BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32330.1
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473420 jgi|Araly1|473420|fgenesh2_kg.1__3374__AT1G32330.1 2313 0.0
> Ahg473420 jgi|Araly1|473420|fgenesh2_kg.1__3374__AT1G32330.1
Length=1708
Score = 2313 bits (1252), Expect = 0.0
Identities = 1525/1650 (92%), Gaps = 45/1650 (3%)
Strand=Plus/Plus
Query 84 TATATAAAACCCTAATTTTCTCAAAATTCCCAAATA--TTGACTTGGAATC--AAAAATC 139
||||| |||||||| ||||||||||| ||||||||| ||||||||||| | |||||||
Sbjct 42 TATATGAAACCCTAGTTTTCTCAAAA-TCCCAAATATTTTGACTTGGAAACAAAAAAATC 100
Query 140 CGAATGGAT-GTG-----AGCAAAGTAACCACAAGCGACGGCGGAGGAGATTCAATGGAG 193
||||||||| ||| |||||||||||||| |||||||| || ||||| |||||||||
Sbjct 101 CGAATGGATGGTGTAACCAGCAAAGTAACCACCAGCGACGGTGGTGGAGAATCAATGGAG 160
Query 194 ACTAAGCCATCTCCTCAACCTCAGCCTGCGGCGATTCTAAGTTCAAACGCGCCTCCTCCG 253
| |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 161 ATTAAGCCATCTCCTCAACCACAGCCCGCGGCGATTTTAAGTTCAAACGCGCCTCCTCCG 220
Query 254 TTTCTGAGCAAGACCTATGATATGGTTGATGATCACA-ATACAGATTCGATTGTCTCTTG 312
|||||||||||||||||||| ||||||||||||| || ||| ||||||||||| |||||
Sbjct 221 TTTCTGAGCAAGACCTATGACATGGTTGATGATC-CAGCTACCGATTCGATTGTTTCTTG 279
Query 313 GAGTGCTAATAACAACAGTTTTATCGTTTGGAAACCACCGGAGTTCGCTCGCGATCTTCT 372
||||| || |||||||||||||||||||||| | ||||| ||||||||||| ||||||||
Sbjct 280 GAGTGATACTAACAACAGTTTTATCGTTTGGGATCCACCTGAGTTCGCTCGAGATCTTCT 339
Query 373 TCCTAAGAACTTTAAGCATAATAATTTCTCCAGCTTCGTTAGACAGCTTAATACCTATGG 432
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 340 TCCTAAGAACTTTAAGCATAACAATTTCTCCAGCTTCGTTAGACAGCTAAATACCTATGG 399
Query 433 TTTCAGGAAGGTTGACCCAGATAGATGGGAATTTGCGAATGAAGGTTTTTTAAGAGGTCA 492
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 400 TTTCCGGAAGGTTGACCCAGATAGATGGGAATTTGCGAATGAAGGTTTCTTAAGAGGTCA 459
Query 493 GAAGCACTTGC-TACAATCAATAACTAGGCGAAAACCTGCCCATGGACAGGGACAGGGAC 551
||||||||||| || || ||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 460 GAAGCACTTGCTTA-AAACAATAACTAGGCGAAAACCTGCCCAGGGACATGGACATGGAC 518
Query 552 ATCAGCGATCTCAGCACTCGAATGGACAGAACTCATCTGTTAGCGCATGTGTTGAAGTTG 611
||| || ||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 519 ATCCGCAATCTCAGAACTCGAATGGACAGAACTCATCTGTTAGTGCATGTGTTGAAGTTG 578
Query 612 GCAAATTTGGTCTCGAAGAAGAAGTTGAAAGGCTTAAAAGAGATAAGAACGTCCTTATGC 671
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GCAAATTTGGTCTTGAAGAAGAAGTTGAAAGGCTTAAAAGAGATAAGAACGTCCTTATGC 638
Query 672 AAGAACTCGTCAGATTAAGACAGCAGCAACAGTCCACTGATAACCAACTTCAAACGATGG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 AAGAACTCGTCAGATTAAGACAGCAGCAACAGTCCACTGATAACCAACTTCAAACGATGG 698
Query 732 TTCAGCGTCTCCAGGGCATGGAGAATCGGCAACAACAATTAATGTCATTCCTTGCAAAGG 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 TTCAGCGTCTCCAGGGCATGGAGAATCGGCAACAACAATTAATGTCATTCCTTGCAAAGG 758
Query 792 CAGTACAAAGCCCTCATTTTCTATCTCAATTCTTACAGCAGCAGAATCAGCAAAACGAGA 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CAGTACAAAGCCCTCATTTTCTATCTCAATTCTTACAGCAGCAGAATCAGCAAAACGAGA 818
Query 852 GTAATAGGCGCATCAGTGATACCAGTAAGAAGCGGAGATTCAAGCGAGACGGCATTGTCC 911
| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 819 G-----G-CGCATCAGTGATACCAATAAGAAGCGGAGATTCAAGCGAGACGGCATTGTCC 872
Query 912 GTAATAATGATTCTGCTACTCCTGATGGACAGATAGTGAAGTATCAACCTCCAATGCACG 971
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GTAATAATGATTCTGCTTCTCCTGATGGACAGATAGTGAAGTATCAACCTCCAATGCACG 932
Query 972 AGCAAGCCAAAGCAATGTTTAAACAGCTTATGAAGATGGAACCTTACAAAACCGGCGATG 1031
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 933 AGCAAGCCAAAGCAATGTTTAAACAGCTTATGAAGATGGAACCTTACAAAACTGGCGATG 992
Query 1032 ATGGTTTCCTTCTAGGTAATGGTACGTCTACTACCGAGGGAACAGAGATGGAGACTTCAT 1091
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 993 ATGGTTTCCTTCTAGGTAATGGTACTTCTACTACCGAGGGAACAGAGATGGAGACTTCAT 1052
Query 1092 CAAACCAAGTATCGGGTATAACTCTTAAGGAAATGCCTACAGCTTCTGAGATACAGTCAT 1151
||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1053 CAAACCACGCCTCGGGTATAACTCTTCAGGAAATGCCAACAGCTTCTGAGATACAGTCAT 1112
Query 1152 CATCACCA--A-TTGAAACAACTCCTGAAAATGTTTCGGCAGCATCAGAAGCAACCGAGA 1208
|||||||| | ||| ||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 1113 CATCACCATCAATTGGAACAACTCCTGAAAATGTTTCAGCAGTACCAGAAGCAACCGAGA 1172
Query 1209 ACTGTATTCCTTCACCTGATGATCTAACTCTTCCCGACTTCACTCATATGCTACCGGAAA 1268
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1173 ACTGTATTCCTTCACCTGATGATCTAACTCTTCCCGAATTCACTCATATGCTACCGGAAA 1232
Query 1269 ATAATTCAGAGAAGCCTCCAGAGAGTTTCATGGAACCAAACCTGGGAGGTTCTAGTCCAT 1328
|||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1233 ATAACGCAGAGAAGCCTCCAGAGAATTTCATGGAACCAAATATGGGAGGTTCTAGTCCAT 1292
Query 1329 TACTAGATCCAGATCTGTTGATCGATGATTCTTTGTCCTTCGACATTGACGACTTTCCAA 1388
||||||| ||||||||||||||| | | ||||| | | | | | |||||||||||
Sbjct 1293 TACTAGACCCAGATCTGTTGATC-A--A--CTTTGACAT-C-A-A----CGACTTTCCAA 1340
Query 1389 TGGATTCTGATATAGACCCTGTTGATTACGGTTTACTCGAACG-CTTACTCATGTCAAGC 1447
|||| ||||||| | ||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1341 TGGACCCTGATATGGGCCCTGTTGATTACAAATTACTCGAA-GACTTACTCATGTCAAGC 1399
Query 1448 CCGGTTCCAGATAATATGGATT-CAACACCAGTGGACAATGAAACAGAGCAGGAACAAAA 1506
|||||||||||||||||||||| || |||||||||||||||| ||||||||| |||||||
Sbjct 1400 CCGGTTCCAGATAATATGGATTTCA-CACCAGTGGACAATGAGACAGAGCAGAAACAAAA 1458
Query 1507 TGGATGGGACAAAACTAAGCATATGGATAATCTGACTCAACAGATGGGTCTCCTCTCTCC 1566
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1459 TGGATGGGACAAAACTAAACAGATGGATAATCTGACTCAACAGATGGGTCTCCTCTCGCC 1518
Query 1567 TGAAACCTTAGATCTCTCAAGGCAAAATCCTTGATTTTGGGAGTTTTTAAAGTCTTTTGA 1626
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1519 TGAAACCATAGATCTCTCAAGGCAAAATCCTTGATTTTGGGAGTTTTAAAAGTCTTTTGA 1578
Query 1627 GGTAACACA-GTCCCTGAGAG--CAGCATATTCATTTTTCATACGCTGATCTTTTATTTC 1683
||||||| | ||||||||||| |||||||||||||| || | |||||| ||| ||||
Sbjct 1579 GGTAACAGAAGTCCCTGAGAGATCAGCATATTCATTT--CACGCACTGATCATTTCTTTC 1636
Query 1684 TTCTTTCTTGTATCAAAGTGGTTTAACATT 1713
||||||||| ||||||| | || |||||||
Sbjct 1637 TTCTTTCTTATATCAAACTTGTATAACATT 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581223985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5