BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32340.1
Length=2480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913045 jgi|Araly1|913045|Al_scaffold_0001_3299 3114 0.0
> Ahg913045 jgi|Araly1|913045|Al_scaffold_0001_3299
Length=2049
Score = 3114 bits (1686), Expect = 0.0
Identities = 1949/2073 (94%), Gaps = 30/2073 (1%)
Strand=Plus/Plus
Query 22 ATGAGAGGAACACACGGAGGCAGTGGAAGAAATCACGACCGCCGCTACATCCGCCGTGAC 81
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAGACGAACACACGGAGGCAGTGGAAGAAATCACGACCGCCGCTACATCCGCCGCGAC 60
Query 82 GCTGGGATTGTGAATCCAGTCAACGATCATCCAAAATCAGAGCATCAGAAAGAAGACACG 141
|||||||||||||||||| | ||||||||| | || | ||| | |||||||||
Sbjct 61 GCTGGGATTGTGAATCCAATTAACGATCAT-----A-CACA--ATC-G---GAAGACACG 108
Query 142 ACTTCGACGGATTTATCATCTGCAGCAGCTTTTCCGTCTACTTCTCAGCCAATCCAAAAC 201
||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 109 ACTTCAACGGATTCATCATCT---GCAGCTTTTCCGTCTACTTCTCAGCCATTCCAAAAC 165
Query 202 CTCGATCATTCTACAAAACCTTC-AAAGTCTCACCGGAATCGACGCAGCCGTGGATCAAA 260
||||||||| ||||||||||||| ||| |||||||||||||| || ||||||||||| ||
Sbjct 166 CTCGATCATCCTACAAAACCTTCGAAA-TCTCACCGGAATCGGCGAAGCCGTGGATCGAA 224
Query 261 TTCAAAACCTCGTCCCGTGGAGAAACCGGAGGTGAATTTTGCTGAATCCGATGTTGTTGA 320
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 225 TTCAAAACCTCGTCCCGTGGAGAAATCGGAGGTGAATTTTGCTGAATCCGATGCTGTAGA 284
Query 321 TTGCTTGGCTGATGAATTGAGTAGGTTAAAGGTGAAACAGAATTCGCATTCGGTGAATAT 380
|||||| ||||||||||| ||||| |||||||||||||||| || |||| || ||
Sbjct 285 TTGCTTAGCTGATGAATTCAGTAGCTTAAAGGTGAAACAGAGCTCAAATTC---GATTAC 341
Query 381 GGAGGAGAAGTTTCATCACAGTTCTAGTGATCATTCGAATTGTGAGGAATCGGAGTTAAA 440
||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||
Sbjct 342 GGAGGAGAAGTTTCATCACAGTTCTGGTGATCATTCGAATTGTGAGGAATTGGAGGTGAA 401
Query 441 GAGAGCTGAAAGTGAAGAAATTGCTGATGGTGTTGATGAATATGAGACGAAGGAAGATAT 500
||||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 402 GAGAGCTGAAATTGAAGAAATTGCTGATGGTGTTGATGAGTATGAGAAGAATGAAGATAT 461
Query 501 TATGTTGACAATTCTGAAAGATTTG-CGATCTAGTGTCAGTGAGCCAGAGCTAACAGAGG 559
||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 462 TATGTTGACAATTCTGAAAGATTTGAC-ATCTAGTGTCATTGAGCCAGAGCTAACAGAGG 520
Query 560 AGCAACTAAAGATGAATGATCAATTACAGGAAGATGAGCTTTTGGCATTGGGGTACATAT 619
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 521 AGCAACTAAAGATGAATGATCAATTGCAGGAAGATGAGCTTTTGGCATTGGGGTACATAT 580
Query 620 ATGGAGGAAACATGTTCATCTTTGATCGGTATAACGATATGCGATACTTTCAGGTTCATG 679
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 581 ATGGAGGAAACATGTTCATCTTTGATCGGCATAAAGATATGCGATACTTTCAGGTTCATG 640
Query 680 TAAACGTTGAAGCTACTAGTGAATATACTATCTCTACAAAGCTTAACTTACAAGCTGATT 739
||||||||||||||||||||||||||| ||||||| | |||||||| |||||||| ||||
Sbjct 641 TAAACGTTGAAGCTACTAGTGAATATAATATCTCTGCGAAGCTTAAGTTACAAGCGGATT 700
Query 740 CAAGCAAAGAGTCAGAGGATTTCTTGTACTCTTTCAAGGCGCAACACCTTCCACCGATTG 799
||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||
Sbjct 701 CAAGCAAAGAGTCAGAGGATTTCCTGTACTCATTCAAGGCGCAACACCTTCCGCCGATTG 760
Query 800 TGTTGAAATGTTTATTACCAAAAGCTTATCCGAGCCACTTACCGCCTTATTTCTTAATAA 859
|||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 761 TGTTGACATGTTTATTACCAAATGCTTATCCAAGCCATTTACCGCCTTATTTCTTAATAA 820
Query 860 GTGTTCAGTGGATGAATCCTGATAAGATTTCAAGTCTCTGCTCTAA-GCTGGACTCGT-T 917
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |
Sbjct 821 GTGTTCAGTGGATGAATCCTGATAAGATTTCAAGTCTCTGCTC-AATGCTGGACTC-TAT 878
Query 918 ATGGAGT-GAACAGCCAGGGCAAGAAGTCTTGTACC-AGTGGACAGATTGGCTACAGAAC 975
||||| | |||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 879 ATGGA-TGGAACAGCCAGGGCAAGAAGTCTTGTACCTA-TGGACGGATTGGCTACAGAAC 936
Query 976 TCGTCGATTTCTCATCTTGGTTTTGATAATGAGATTGTTCTTGGTCCTTATGGTGTTACA 1035
||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 937 TCGTCAATTTCTCACCTTGGCTTTGATAAGGAGATTGTTCTTGGTCCTTATGGGGTTACA 996
Query 1036 TGTTCCAGAGATAAGCGTGCTGTGTCTGGAAGTCGTTCTCCGGATTCAGATATTCCTTAT 1095
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 997 TGTTCCAGAGATAAACGTGCTGTGTCTGGAAGTCGTTCCCCGGATTCAGATATTCCTTAT 1056
Query 1096 ATTAGGAGTTATGACGATGAGAAACGTCATGATAGCTTCCTTCAGAGCTTGCATGAGTGC 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 ATTAGGAGTTATGACGATGAGAAACGTCATGATAGCTTCCTTCAGAGCTTGCATGAGTGC 1116
Query 1156 TGCATATGCTTCTCTGAATCTGCAGGTATCGACTTTGTTAAGTTACCATGCCAGCATTTC 1215
|| ||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1117 TGTATATGTTTCACTGAGTCTGCAGGTATTGACTTTGTTAAGTTACCATGCCAGCATTTC 1176
Query 1216 TTTTGTTTGAAATGTATGAAGACCTATACAGACATACATGTCACTGAAGGCACAGTTAAC 1275
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1177 TTTTGTTTGAAATGTATGAAGACCTATACAGATATACATGTCTCTGAAGGCACAGTTAAC 1236
Query 1276 AAGCTCAAGTGTCCGGACTCGAAATGTGGAGAAACTGTTCCGCCAGGGATATTGAAGAGA 1335
|| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1237 AAACTCAAGTGTCCAGACTCGAAATGTGGAGAAATTGTTCCGCCAGGTATATTGAAGAGA 1296
Query 1336 TTGTTGGGCGATGAAGCGTATGAACGGTGGGAAACTCTTATGTTACAGAAAACACTGGAA 1395
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1297 TTGTTGGGCGAAGAAGCGTATGAGCGCTGGGAAACTCTTATGTTACAGAAAACACTGGAA 1356
Query 1396 TCCATGACTGACGTTGCTTACTGTCCTAGATGTGAAACCCCTTGCATAGAGGACGAGGAA 1455
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1357 TCCATGACTGACGTCGCTTACTGTCCTAGATGTGAAACCCCATGCATAGAGGACGAGGAA 1416
Query 1456 CAGCTTGCTTTATGCTTCAAATGCTACTTCAGTTTCTGTACACTTTGTAAGGAAAAGAGA 1515
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1417 CAGCTTGCTTTATGCTTCAAATGCTACTTCAGTTTCTGTACGCTTTGTAAGGAAAAGAGA 1476
Query 1516 CATGTGGGTGTGGCTTGCATGAGCCCGGAACTTAGGCTTCAAATCTTGCAGGAGCGTCAA 1575
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1477 CATGTGGGTGTGGCTTGCATGAGTCCGGAACTTAGGCTTCAAATCTTGCAGGAGCGTCAG 1536
Query 1576 GATTCTTCTCGTCTTGGAGAGGAACAAAGGCGGAAAGAGAAAGAAATGATCAATGAGATT 1635
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1537 GGTTCTTCTCGTCTTGGAGAGGAACAAAGGCGGAAAGAAAAAGAAATGATCAATGAGATT 1596
Query 1636 ATGAGTGTGAAGGTGATAATGAAAAGCGCTAAACAATGTCCGTCGTGCAAAATAGCCATC 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 ATGAGTGTGAAGGTGATAATGAAAAGCGCTAAACAATGTCCGTCGTGCAAAATAGCCATC 1656
Query 1696 TCAAGAACCGGAGGTTGTAACAAAATGGTATGCAATAACTGTGGTCAATACTTTTGTTAC 1755
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1657 TCAAGAACCGGAGGTTGTAACAAAATGGTCTGCAATAACTGTGGCCAATACTTTTGTTAC 1716
Query 1756 CGTTGCAACGAAGCTATCACTGGTTATGAACATTTCAGTGAGGGAAAATGTGAACTGTTC 1815
||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1717 CGTTGCAACAAAGCTATCACTGGTTATGAACATTTCAGTGAGGGAACATGTGATCTGTTC 1776
Query 1816 CCACAAGAGGCGATCCAAGAATGGAATGAGATGATGAATGAGAGACAAGTCATTGGACAG 1875
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1777 CCACAAGAGGCGATCCAAGAATGGAATGAGAGGATGAATGAGAGACAAGTCATTGGGCAA 1836
Query 1876 ATTCAAGCGCAACTGTTTGCACAAGGCGGTCAGTTTCCACAGCGCGGTCAGTTATGTCCT 1935
|||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 1837 ATTCAAGCTCAACTGTTTGCACAACACGGTCAGTTCCCACAGCGCGGCCAGTTATGTCCT 1896
Query 1936 AATTGCCGCCAGTTCAATGGAAAGGCGGGAAACAACAATCACTTGTTTTGTTGGGCATGT 1995
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1897 AATTGCCGCCAGTTCAATGCAAAGGCGGGAAACAACAATCACTTGTTTTGCTGGGCATGT 1956
Query 1996 CAAGCACATTTCTGTTATCTTTGTAAGAAAGTGGTGAAGAAATCTGCTCAGCATTATGGA 2055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 CAAGCACATTTCTGTTATCTTTGTAAGAAAGTGGTGAAGAAATCTGCTCAGCATTATGGA 2016
Query 2056 CCAAAGGGCTGCAAGCAGCACACAGATGGGTAA 2088
|||||||| |||||||| |||||||||||||||
Sbjct 2017 CCAAAGGGTTGCAAGCAACACACAGATGGGTAA 2049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473461230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5