BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32350.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313807 jgi|Araly1|313807|fgenesh1_pm.C_scaffold_1002587 1354 0.0
> Ahg313807 jgi|Araly1|313807|fgenesh1_pm.C_scaffold_1002587
Length=948
Score = 1354 bits (733), Expect = 0.0
Identities = 845/900 (94%), Gaps = 3/900 (0%)
Strand=Plus/Plus
Query 182 TCCGGTTTAGGAATTGG---AGGATTCAGGGGACATCTCATTAGCCACTTGCCCAATGTT 238
||||||||||| |||| |||| |||| |||||| |||| ||||||||| ||| ||||
Sbjct 49 TCCGGTTTAGGTGTTGGACCAGGAATCAGAGGACATGTCATCAGCCACTTGTCCACTGTT 108
Query 239 CGGCTATTGAGCTCTGACACGTCATCTCCGGTAAGTGGGAATAACCAGCCAGAAAATCCT 298
|| | ||||| ||||||||||| ||||||| |||||||||||||||||| ||||| |||
Sbjct 109 CGATTTTTGAGTTCTGACACGTCGTCTCCGGCAAGTGGGAATAACCAGCCGGAAAAGCCT 168
Query 299 ATCCGAACGGCCGATGGTAAAGTTATATCCACTTATTGGGGTATACCTCCTACTAAGATC 358
||| |||||| || || ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 169 GTCCAAACGGCGGACGGCAAAGTCATATCCACTTATTGGGGTATACCTCCGGCTAAGATC 228
Query 359 ACTAAACCGGACGGTTCAGCTTGGAAGTGGAATTGTTTTCAGCCATGGGATTCATACAAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 ACTAAACCGGACGGTTCAGCTTGGAAGTGGAATTGTTTTCAGCCATGGGATTCATACAAA 288
Query 419 CCGGATGTGTCCATTGATGTAACTAAACATCATAAACCCTCCAATTTCACTGACAAATTC 478
||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 289 CCGGACGTATCCATTGATGTAACCAAGCATCATAAACCCTCCAATTTCACTGACAAATTC 348
Query 479 GCATATTGGACCGTTCAAACTCTGAAAATACCGGTTCAACTATTTTTTCAGAGGAAGCAC 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 349 GCATATTGGACCGTTCAAACTCTGAAAATACCGGTTCAACTATTTTTCCAGAGGAAGCAC 408
Query 539 ATGTGCCATGCGATGTTGCTAGAGACGGTGGCTGCGGTGCCGGGAATGGTCGGGGGGATG 598
|||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 409 ATGTGCCATGCGATGTTGCTGGAGACAGTGGCGGCGGTTCCGGGAATGGTCGGAGGGATG 468
Query 599 CTTTTGCACTTGAAATCTCTCCGGAGGTTCGAACATAGCGGGGGATGGATCAAAGCTTTG 658
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 469 CTTTTGCACTTGAAATCTCTCCGGAGATTTGAACATAGCGGCGGATGGATCAAAGCTTTG 528
Query 659 CTCGAAGAGGCTGAGAACGAGCGTATGCATCTCATGACTTTCATCGAACTTTCACAACCC 718
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CTCGAAGAGGCCGAGAACGAGCGTATGCATCTCATGACTTTCATCGAACTTTCACAACCC 588
Query 719 AAATGGTACGAACGAGCGATTGTGTTCACGGTCCAAGGCGTTTTCTTCAACGCATATTTC 778
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AAATGGTACGAACGGGCTATTGTGTTCACGGTCCAAGGCGTTTTCTTCAACGCATATTTC 648
Query 779 CTGGCTTATGTAATTTCACCCAAACTTGCTCATCGTATCACTGGATACTTAGAAGAAGAG 838
| |||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 649 TTAGCTTATGTGATTTCTCCAAAACTTGCTCATCGTATCACTGGATACCTAGAAGAAGAG 708
Query 839 GCTGTAAATTCTTACACTGAATTTCTCAAAGACATTGATGCCGGAAAATTCGAAAACTCG 898
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GCTGTGAATTCTTACACCGAATTTCTCAAAGACATTGATGCCGGAAAATTCGAAAACTCG 768
Query 899 CCAGCTCCAGCCATCGCAATCGATTACTGGCGGTTGCCTAAAGATGCAACGCTTAGGGAT 958
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 769 CCAGCTCCAGCCATCGCAATCGATTACTGGCGGTTGCCTAAAGACGCAACGCTTAGGGAT 828
Query 959 GTGGTTTATGTTATACGAGCTGACGAAGCTCACCACCGTGATATTAACCACTATGCTTCG 1018
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 829 GTGGTTTATGTTATCCGAGCTGACGAAGCTCACCACCGAGATATTAACCACTATGCTTCG 888
Query 1019 GATATACAATTCAAAGGACATGAACTCAAGGAAGCTCCGGCTCCTATTGGATATCATTAA 1078
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GATATACAATTTAAAGGACATGAACTCAAGGAAGCTCCGGCTCCTATTGGATATCATTAA 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5