BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32360.1
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922321 jgi|Araly1|922321|scaffold_103602.1 1860 0.0
> Ahg922321 jgi|Araly1|922321|scaffold_103602.1
Length=1199
Score = 1860 bits (1007), Expect = 0.0
Identities = 1140/1202 (95%), Gaps = 17/1202 (1%)
Strand=Plus/Plus
Query 378 CTTCGATTTTTCACACGATGAG---TCATCACCGGCGAGATTCCGGCGGAGATGTAGTTC 434
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 4 CTTCGAGTTTTCACACGATGAGTCATCATCACCGGCGAGATTCCGGCGGAGATGTAGTTC 63
Query 435 ACGTGATTCCCACAAACAATCCTCCGCCGGATAATTGGTTTCCGAATCTCGGCGATAGTG 494
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 64 ATGTGATACCCACAAACAATCCTCCGCCGGAGAATTGGTTTCCGAATCTCGGCGATAGTG 123
Query 495 CTGTTTGGGCGACGGAAGATGATTACAATAGAGCTTGGGCTATGAATCCCGATAACACCT 554
| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 124 CCGTTTGGGCGACGGAAGATGATTACAATCGAGCTTGGGCGATGAATCCCGATAACACCT 183
Query 555 CCGGCGACAACAATGGTCCACCGAACAAGAAGACTCGAGGCTCTCCGTCGTCTTCATCAG 614
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CCGGTGACAACAATGGTCCACCGAACAAGAAGACTCGAGGCTCTCCGTCGTCTTCATCAG 243
Query 615 CCACGACTACTTCTGCTGCGAGCAATCGTACTAAAGCGATTGGGAAAATGTTCTTCAAGA 674
|||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 244 CCACCACTACTTCCGCCGCGAGCAATCGTACCAAAGCGATTGGGAAAATGTTCTTCAAGA 303
Query 675 CGAAGCTTTGTTGCAAGTTTCGTGCTGGGACTTGTCCGTATATAACGAATTGTAACTTTG 734
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 304 CGAAGCTTTGTTGCAAGTTTCGTGCTGGGACTTGTCCGTATATAACTAATTGTAACTTTG 363
Query 735 CTCATACGGTGGAGGAGCTTCGTCGTCCACCGCCGAATTGGCAGGAGATTGTGGCGGCTC 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTCATACGGTGGAGGAGCTTCGTCGTCCACCGCCGAATTGGCAGGAGATTGTGGCGGCTC 423
Query 795 ATGAGGAGGAGAGATCTGGTGGTATGGGAACTCCTACAGTTTCTGTGGTTGAGATTCCAC 854
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | ||||
Sbjct 424 ATGAGGAGGAGAGATCTGGTGGTATGGGAACTCCTACCGTTGCTGTGGTTGAGCTGCCAC 483
Query 855 GGGAGGAGTTTCAGATCCCGTCTTTGGTGTCATCGACGGCTGAGAGTGGGAGATCTTTTA 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GGGAGGAGTTTCAGATCCCGTCTTTGGTGTCATCGACGGCTGAGAGTGGGAGATCTTTTA 543
Query 915 AAGGAAGACATTGTAAGAAGTTTTATACTGAAGAAGGATGTCCTTATGGAGAAAGTTGTA 974
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 544 AAGGAAGACATTGTAAGAAGTTTTATACTGAAGAAGGATGTCCTTATGGAGAGAGTTGTA 603
Query 975 CGTTTCTGCATGATGAGGCTTCGAGGAATAGAGAGAGTGTTGCTATTAGCTTAGGACCtg 1034
|||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 604 CGTTTCTGCACGATGAGGCTTCGAGGAATAGAGAAAGCGTTGCTATTAGTTTAGGACCTG 663
Query 1035 gtggttatggaagt---ggtggtggtggtggaagtggcggtggttct-gt--tggtggtg 1088
| |||||||||||| |||||||||||||||||||| | ||||||| || ||||||||
Sbjct 664 GCGGTTATGGAAGTGGCGGTGGTGGTGGTGGAAGTGGAGTTGGTTCTGGTGGTGGTGGTG 723
Query 1089 gtggtagtagtagcaatgtagtagtgcttggtggtggtggtggaagtggaagtggaagtg 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 724 GTGGTAGTAGTAGCAATGTAGTAGTGCTTGGTGGTGGTGGTGGAAGTGGAAGTGG-A--- 779
Query 1149 gGATTCAGATTTTGAAGCCTTCAAATTGGAAGACAAGGATTTGCAACAAATGGGAGATTA 1208
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 --ATTAATATTTTGAAGCCTTCAAATTGGAAGACAAGGATTTGCAACAAATGGGAGATTA 837
Query 1209 CTGGGTATTGTCCATTTGGTGCTAAGTGTCATTTTGCTCATGGAGCTGCAGAGTTACATA 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTGGGTATTGTCCATTTGGTGCTAAGTGTCATTTTGCTCATGGAGCTGCAGAGTTACATA 897
Query 1269 GATTTGGCGGAGGACTCGTGGAAGAAGAAGGCAAAGATGGAGTATCACCCAATCCGGACA 1328
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 898 GATTTGGCGGAGGACTCGTAGAAGAAGAAGGCAAAGACGGAGTATCACCCAATCCGGACA 957
Query 1329 CAAAGCAAACAGTACAAAACCCCAAAGGACTAT-CAGACACAACAACACTTCTATCTCCA 1387
|||||||||||||||||||||| ||||||| || |||||||| |||||||||||||||||
Sbjct 958 CAAAGCAAACAGTACAAAACCCGAAAGGAC-ATGCAGACACAGCAACACTTCTATCTCCA 1016
Query 1388 GGAGTACCTCATAATGCAGATGCCAGTTACCACACTGGAGTTGCATTGCAACGAGCGTCT 1447
||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 1017 GGAGTTCCTCATAATGCAGATGCCGGTTACCACAGTGGAGTCGCATTGCAACGAGCGTCT 1076
Query 1448 AGTGCGGTTACACAAAAGCCTGGAATTAGAACTCATCAGAAGTGGAAAGGACCGGCGAAA 1507
|||||||| ||||||||||||||| | ||||| ||||||||||||||||| |||||||||
Sbjct 1077 AGTGCGGTAACACAAAAGCCTGGAGTCAGAACACATCAGAAGTGGAAAGGTCCGGCGAAA 1136
Query 1508 ATCAGTCGGATATACGGTGATTGGATCGACGATATTGAATGATGTTACCTCTTTCTTTTT 1567
|||||||||||||||||||||||||||||||||||||||| | |||| | || |||||||
Sbjct 1137 ATCAGTCGGATATACGGTGATTGGATCGACGATATTGAATAAAGTTATCGCTGTCTTTTT 1196
Query 1568 TC 1569
||
Sbjct 1197 TC 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64753416500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5