BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32361.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473425 jgi|Araly1|473425|fgenesh2_kg.1__3379__AT1G32361.1 1661 0.0
> Ahg473425 jgi|Araly1|473425|fgenesh2_kg.1__3379__AT1G32361.1
Length=1164
Score = 1661 bits (899), Expect = 0.0
Identities = 972/1006 (97%), Gaps = 9/1006 (1%)
Strand=Plus/Plus
Query 1 ATGTATGACCTTACCTTTCTCCTCATTTCTCTCTTCCCCATTGACATTACCCTTCCCACA 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGTATGACCTTACCTTTCTCCTCATTTCTCTCTTCCCCACTGACATTACCCTTCCCACA 60
Query 61 CGGCAACCTCAGAATAAACCCTTTCTTCTTCCTCAAGCTACCTATGAAACCAGTCACAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGGCAACCTCAGAATAAACCCTTTCTTCTTCCTCAAGCTACCTATGAAACCAGTCACAAT 120
Query 121 ATTTCTGATCCGGCCGTTTCACTGCACGGTCTCAAAATGTCTATATCCACGACCGAGACA 180
|||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 121 ATTTCTGATCCGACCGTTTCACTACACGGTCTCAAAATGTCTTTATCCACGACCGAGACA 180
Query 181 GACAATTTCAAACCAGTCCATACCCTCGTTTCCTCCCCGGTCACCATAGTCTTGACCGGT 240
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GACAATTTCAAACCAGTACACACCCTCGTTTCCTCCCCGGTCACCATAGTTTTGACCGGT 240
Query 241 AGTCTTCTCTTCATCATTTTCACGGGGTTCTTCTCCTTCTTCTTCTGTGGATGTTTATTT 300
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 241 AGTCTTCTCTTCATCATTTTCACCGGTTTCTTCTCCTTCTTCTTCTGTGGATGTTTATTT 300
Query 301 AGGAAACTCATGAGGATTTGGAATAACCAT------CGAAACCGAAACCGTCCTAGTAAC 354
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AGGAAACTCATGAAGATTTGGAATAACCATCGAAACCGAAACCGAAACCGTCCTAGTAAC 360
Query 355 CTAATCCAACCGTCTAATCCACCTGAAAACCTCGGTCTCGACTCCAAGATCATTGAATCA 414
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 CTAATCCAACCGTCTAATCCACCCGAAAACCTCGGTCTCGACTCCAAGATCATTGAATCC 420
Query 415 TTCCCTGAGTATCCTTATTCGGTGAAAGATCATGGGACGGATCAATGTTCCATTTGTTTA 474
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCCCTGAGTATCCGTATTCGGTGAAAGATCATGGGACGGATCAATGTTCCATTTGTTTA 480
Query 475 ACAGAGTTTATGGATGATGACACTATTAGGCTCATTTCTACTTGTAATCACTCCTTCCAC 534
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAGAGTTTATGGATGATGACACCATTAGGCTCATTTCTACTTGTAATCACTCCTTCCAC 540
Query 535 ACGATTTGCATTGATCTTTGGTTTGAAGGACACAAGACTTGCCCTGTATGCAGGCGTGAG 594
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 ACAATTTGCATTGATCTTTGGTTTGAAGGACACAAGACTTGCCCGGTATGCAGGCGTGAG 600
Query 595 CTTGATGTAGAAGACCGGACATCGCTAGAAAAGCCGCTAGAAGTTCCTGAAATCGATCTA 654
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 601 CTTGATGTAGAAGACCGGACATCGCTAGAAAAGCCGATAGAAGCTCCTGAAATCGATCTA 660
Query 655 GTTAGATCTGAAATCCACGACGAGCCTTTGCCCCGTGACACAGTGACAATCATCGTTCAC 714
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 GTTAGATCTGAAATCCACGACGAGCCTTTGCCCCGTGACACATTGACAATCATCGTTCAC 720
Query 715 GAGGAGCATCCTAGTACTACTATTGGTAGTTTAGAGCATACAGATGAAATCGAAAGCTAT 774
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGGAGCATCCTACTACTACTATTGGTAGTTTAGAGCATACAGATGAAATCGAAAGCTAT 780
Query 775 GAAAGACGAATGAAAGCATCGAATTTGCGGTTTTGGAGGTCACATTCTACTGGACACTCT 834
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 781 GAAAGACGAATGAAAGCATCGAATTTACGGTTTTGGAGGTCGCATTCTACTGGACATTCT 840
Query 835 ATAGTAGTTAAGACCGAAAACGAACaagaagaagaagaagaagaagaaaaagaTGAGATT 894
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 ATAGTAGTTAAGACCGAAAACGAAC---AAGAAGAAGAAGAAGAAGAAAAAGATGAGATT 897
Query 895 AAGATACGTATTGAGATCTCTGGAGAATGTCAGTTTGAAGATCACAAGATGACTTTACCA 954
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGATACATATTGAGATTTCTGGAGAATGTCAGTTTGAAGATCACAAGATGACTTTACCA 957
Query 955 AACAGAAAGTTGTATTGCGTTAGGGGAACTTACTCTGTAGGATAGA 1000
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AACAGAAAGTTGTATTGCGTTAGGGGAACTTACTCTGTAGGATAGA 1003
Score = 206 bits (111), Expect = 4e-52
Identities = 152/170 (89%), Gaps = 10/170 (6%)
Strand=Plus/Plus
Query 1050 AAGACCGGAATTAGATTCTAGGTTT-TGATATATTCTTTGTTTCGGCCGTTCCATTTTTG 1108
|||||||||||||||||||| |||| |||||||||||||||||| || | |||| |||||
Sbjct 1003 AAGACCGGAATTAGATTCTA-GTTTCTGATATATTCTTTGTTTCAGCTG-TCCAATTTTG 1060
Query 1109 TAATTTTTTGACACTATAGGTTATAGTTATACATATAGAAGATGTTGAAGATTGTTGTAA 1168
||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1061 TAATTGTTTGATACTATA-G-----GTTATACATATAGAAGATGTTGAAGATTGTTGTAA 1114
Query 1169 TGTTTGTACTTAAATTCTCATTATTC-AGTACCAATCATACTTTCCTTTT 1217
| |||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 1115 TATTTGTACTTAAATTCTCATTATTCCAATACAAATCATACTTTCCTTTT 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5