BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G32370.2

Length=800
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg336321 jgi|Araly1|336321|fgenesh1_pg.C_scaffold_1002886           588    2e-167


> Ahg336321 jgi|Araly1|336321|fgenesh1_pg.C_scaffold_1002886
Length=369

 Score =  588 bits (318),  Expect = 2e-167
 Identities = 350/366 (96%), Gaps = 0/366 (0%)
 Strand=Plus/Plus

Query  44   ATGGCGACGGCATCGGAAAATTCAAGAGGAATCAGCGGCGGTGATCGAACGGCGAAAGCT  103
            ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| 
Sbjct  1    ATGGCGACGGCATCGGAAAATTCAAGAGGAATCGGCGGAGGTGATCGAACGGCGAAAGCA  60

Query  104  GTCGTCGCCGATCAGATTTCACAAGCCGTAAATTCCACTGCTAACCTTCTTCATCTGATG  163
             |||||||||||||||| ||||||||||| ||||| |||||||||||||| || ||||||
Sbjct  61   ATCGTCGCCGATCAGATCTCACAAGCCGTGAATTCTACTGCTAACCTTCTACAACTGATG  120

Query  164  CGTCAATCGTCTTCTTCTCAGGCTCAGTTGGCAAAGCTCCCGAAGAATCTGTTGGCGAAA  223
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  121  CGTCAATCGTCTTCTTCTCAGGCCCAGTTGGCAAAGCTCCCGAAGAATCTGTTGGCTAAA  180

Query  224  GCTTCACTGACTAAGGCCACTGGACAGGCGTTGGCGCAGCTTCCTCAAGTGATTTCATCT  283
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  181  GCTTCACTGACTAAGGCCACTGGACAAGCGTTGGCGCAGCTTCCTCAAGTGATTTCATCT  240

Query  284  CTAGATGCTCATATAGAAAGCGGATTGCACAGCGGTGTTCATCTAAACACAGTAACCCAG  343
            || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  241  CTGGATGCTCATATAGAAAGCGGATTGCACAGCGGCGTTCATCTAAACACAGTAACTCAG  300

Query  344  TTACTTGAAAACATGGAAAGCACACAGCTTCGTGCTCTTCGACAATCTAATATTTCCCCT  403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTACTTGAAAACATGGAAAGCACACAGCTTCGTGCTCTTCGACAATCTAATATTTCCCCT  360

Query  404  GTGGTA  409
             |||||
Sbjct  361  TTGGTA  366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29545260675


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5