BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32380.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473426 jgi|Araly1|473426|fgenesh2_kg.1__3380__AT1G32380.1 2087 0.0
Ahg901385 jgi|Araly1|901385|Al_scaffold_0004_2035 1282 0.0
> Ahg473426 jgi|Araly1|473426|fgenesh2_kg.1__3380__AT1G32380.1
Length=1593
Score = 2087 bits (1130), Expect = 0.0
Identities = 1314/1400 (94%), Gaps = 23/1400 (2%)
Strand=Plus/Plus
Query 254 CAGGTGTTTCCGACG--TATATA-T-TTACATATGGCGTCGTTGGCTCTGActtctcctc 309
||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 127 CAGGTGTTTCCGACGTATATATATTCTTACATATGGCGTCGTTGGCTCTGACTTCTCCTC 186
Query 310 cctccgttaagattccttcgtatctctcctcgtcgtcttcgtctctcttctcccgtTCCT 369
|| ||||||||||||| ||||| || || ||||| ||||||||||||||||| |||||||
Sbjct 187 CCGCCGTTAAGATTCCGTCGTACCTGTCATCGTCTTCTTCGTCTCTCTTCTCTCGTTCCT 246
Query 370 CGATTTCTTTCAGGACCACTGAGTCTCGCTCTCGAATCTGCGTTTCTGGTTACGCGAAAT 429
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CGATTTCCTTCAGGAACACTGAGTCTCGCTCTCGAATCTGCGTTTCTGGTTACGCGAAAT 306
Query 430 GCAATTTGCCTAAGGCACTAAACGGGAACGCTCGTG-TTCCAATTATTAATGAGACGACA 488
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 307 GCAATTTGCCTAAGGCACTAAACGGGAACGCTCG-GATTCCAATTATTAATGAGACGACA 365
Query 489 ATTCCTAAGTTCTTTGATTCTTCACGGTTGGAGAAATCGGTTAGTAGAAACAATACTAAG 548
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 366 ATTCCAAAGTTCTTTGATTCTTCACGGTTGGAGAAATCGGTTAGTAGAAACAATACCAAG 425
Query 549 CTCAAGTTGTTCTCTGGTACTGCTAATCCAGCTTTATCTCAGGAAATTGCTTGGTATATG 608
|| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 426 CTTAAGTTGTTCTCTGGTACTGCAAATCCAGCTCTATCTCAGGAAATTGCTTGGTATATG 485
Query 609 GGTC-TGGAGCTTGGGAAGGTTAGCATAAAGAGATTTGCTGATGGAGAGATCTATGTTCA 667
|| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 486 GG-CTTGGAGCTTGGGAAGGTTAGCATAAAGAGATTTGCTGATGGAGAGATTTACGTTCA 544
Query 668 GCTCAAAGAAAGTGTTAGAGGTTGCGATGTCTTTTTGGTGCAGCCTACTTGCACTCCAAC 727
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GCTGAAAGAGAGTGTTAGAGGTTGCGATGTCTTTTTGGTGCAGCCTACTTGCACTCCAAC 604
Query 728 TAATGAGAATCTCATGGAGCTATTGATCATGGTGGATGCTTGCCGAAGAGCATCAGCTAA 787
||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 605 AAATGAGAATCTTATGGAGCTTTTGATCATGGTGGATGCTTGCCGAAGAGCATCGGCTAA 664
Query 788 GAAAGTCACAGCTGTGATTCCGTATTTTGGATACGCAAGAGCTGATAGAAAGACACAAGG 847
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GAAAGTAACAGCCGTGATTCCGTATTTTGGATACGCAAGAGCTGATAGAAAGACACAAGG 724
Query 848 GCGTGAATCTATTGCTGCCAAATTGGTAGCAAACCTTATAACAGAAGCCGGTGCAGATAG 907
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GCGTGAATCCATTGCTGCCAAATTGGTAGCAAACCTTATAACAGAAGCCGGTGCAGATAG 784
Query 908 GGTTCTGGCTTGTGATCTTCATTCAGGACAATCCATGGGTTATTTTGACATACCAGTGGA 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GGTTCTGGCTTGTGATCTTCATTCAGGACAATCCATGGGTTATTTTGACATACCAGTGGA 844
Query 968 TCATGTCTATTGCCAGCCTGTGATACTTGATTATCTTGCTAGCAAGTCAATTTCCTCTGA 1027
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 845 TCATGTCTATTGCCAGCCTGTGATTCTTGATTATCTTGCTAGCAAGTCAATTTCCTCTGA 904
Query 1028 GGATTTGGTAGTGGTTTCTCCTGATGTTGGTGGAGTAGCCAGGGCACGTGCATTTGCTAA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GGATTTGGTAGTGGTTTCTCCTGATGTTGGTGGAGTAGCCAGGGCACGTGCATTTGCTAA 964
Query 1088 GAAATTATCTGATGCACCACTTGCCATTGTCGATAAAAGGCGTCACGGCCACAATGTCGC 1147
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 965 GAAATTATCTGATGCGCCACTCGCCATTGTCGATAAAAGGCGTCACGGCCATAATGTTGC 1024
Query 1148 TGAGGTCATGAACCTAATCGGTGATGTTAAAGGGAAGGTGGCAGTAATGGTGGATGATAT 1207
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 1025 TGAGGTCATGAACCTAATCGGTGATGTTAAAGGGAAAGTGGCAGTTATGGTGGATGACAT 1084
Query 1208 TATTGATACAGCTGGAACCATTGTGAAAGGAGCAGCTCTTTTACACGAGGAGGGTGCACG 1267
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GATTGATACCGCTGGAACCATTGTGAAAGGAGCAGCTCTTTTACACGAGGAGGGTGCACG 1144
Query 1268 TGAGGTTTACGCTTGCTGTACACACGCTGTTTTCAGTCCTCCTGCGATAGAGCGGTTATC 1327
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 1145 TGAGGTTTACGCTTGCTGTACACATGCGGTTTTCAGTCCGCCTGCGATAGAGCGGTTATC 1204
Query 1328 AAGCGGTTTGCTGCAAGAAGTGATAGTGACGAATACTTTACCAGTAGCGGAGAAGAATTA 1387
||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1205 AAGTGGTTTGTTGCAAGAAGTGATAGTGACGAATACTTTACCAGTAGTGGAGAAGAATTA 1264
Query 1388 CTTCCCGCAGTTAACGATATTATCGGTGGCTAATCTTCTGGGTGAGACCATTTGGCGTGT 1447
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1265 CTTCCCGCAGTTAACGATTTTATCGGTGGCTAACCTTCTGGGTGAGACCATATGGCGTGT 1324
Query 1448 CCATGATGATAGCTCCGTTAGTAGTATTTTCCTTTGATACTTGTTGGTTTTTGTTAATCG 1507
|||||||||||||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct 1325 CCATGATGATAGCTCCGTTAGTAGCATTTTCCTTTGACACAAGTTGGTTTTTGTTAATCA 1384
Query 1508 GTTTAGGATCGGTCTAAGTTCCTC-TTTTTTGTT-CTACTTCTTCT-CGACAGTTTCTAG 1564
|||| || | | || |||||| |||||| || ||||||||||| | |||||||||||
Sbjct 1385 GTTTTGGGTT--TAAAAATTCCTCCTTTTTTTTTTCTACTTCTTCTTC-ACAGTTTCTAG 1441
Query 1565 TCTA-----A-CCATGTCTTG-CTTCTCTTACTCACCTAAAGTATGTCAC--AGTTCTAT 1615
|||| | |||||| || |||||||| |||||| ||| |||||||| |||| |||
Sbjct 1442 TCTATCTCTAACCATGTTTTTACTTCTCTTTCTCACCCAAACTATGTCACTGAGTTTTAT 1501
Query 1616 CTTTTCTTCTTTTTAGCATA 1635
|||||||||||||||| |||
Sbjct 1502 CTTTTCTTCTTTTTAGTATA 1521
Score = 122 bits (66), Expect = 6e-27
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11 AAATTCCAAATTTCGAGAAAGAGAGAAGACCCATCGCCGCACCGCTTGAGTCACTCTTCT 70
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AAATTCCAAATATCGAGAAAGAGAGAAGA-CCATCGCCGCACCGCTTGAGTCACTCTTCT 59
Query 71 TCCCGGAGAAGAA 83
|||||||||||||
Sbjct 60 TCCCGGAGAAGAA 72
> Ahg901385 jgi|Araly1|901385|Al_scaffold_0004_2035
Length=1212
Score = 1282 bits (694), Expect = 0.0
Identities = 930/1044 (89%), Gaps = 16/1044 (2%)
Strand=Plus/Plus
Query 449 AAACGGGAACGCTCGTGT-T-CCAATTATTAATGAGACGACAATTCCTAAGTTCTTTGAT 506
||||||||| | || || | |||||||||||||||| |||| |||| |||||||| ||
Sbjct 177 AAACGGGAA-TC-CGAGTATCCCAATTATTAATGAGAGGACACTTCCAAAGTTCTTGGAA 234
Query 507 TCTTCACGGTTGGAGAAATCGGTTAGTAGAAACAATACTAAGCTCAAGTTGTTCTCTGGT 566
||| | || |||||||||| || ||||||| || ||| | | | |||||||||||||||
Sbjct 235 TCTGCTCGAATGGAGAAATCAGTCAGTAGAACCAGTACCAGGTTGAAGTTGTTCTCTGGT 294
Query 567 ACTGCTAATCCAGC-TTTATCTCAGGAAATTGCTTGGTATATGGGTC-TGGAGCTTGGGA 624
||||| |||||||| || ||||||||||||||||||||||||| | ||||||||||||
Sbjct 295 ACTGCAAATCCAGCACTT-GCTCAGGAAATTGCTTGGTATATGGG-CTTGGAGCTTGGGA 352
Query 625 AGGTTAGCATAAAGAGATTTGCTGATGGAGAGATCTATGTTCAGCTCA-AAGAAAGTGTT 683
|||||| || ||||||||||||||||||||||||||||||||||| | |||| || |||
Sbjct 353 AGGTTAATATTAAGAGATTTGCTGATGGAGAGATCTATGTTCAGCT-ACAAGAGAGCGTT 411
Query 684 AGAGGTTGCGATGTCTTTTTGGTGCAGCCTACTTGCACTCCAACTAATGAGAATCTCATG 743
|| || ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 412 AGGGGATGCGACGTCTATTTGGTGCAGCCTACTTGCACTCCCACTAATGAGAATCTCATG 471
Query 744 GAGCTATTGATCATGGTGGATGCTTGCCGAAGAGCATCAGCTAAGAAAGTCACAGCTGTG 803
||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 472 GAGCTTTTGATTATGGTAGATGCTTGCCGAAGAGCTTCAGCTAAGAAAGTAACAGCTGTT 531
Query 804 ATTCCGTATTTTGGATACGCAAGAGCTGATAGAAAGACACAAGGGCGTGAATCTATTGCT 863
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 532 ATTCCGTATTTTGGATATGCAAGAGCTGATAGGAAGACACAAGGGCGTGAATCCATTGCT 591
Query 864 GCCAAATTGGTAGCAAACCTTATAACAGAAGCCGGTGCAGATAGGGTTCTGGCTTGTGAT 923
||||||||||| || || || || || ||||||||||||||| | ||||| || ||||||
Sbjct 592 GCCAAATTGGTTGCTAATCTGATCACTGAAGCCGGTGCAGATCGAGTTCTTGCATGTGAT 651
Query 924 CTTCATTCAGGACAATCCATGGGTTATTTTGACATACCAGTGGATCATGTCTATTGCCAG 983
|||||||| ||||| |||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct 652 CTTCATTCTGGACAGTCCATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG 711
Query 984 CCTGTGATACTTGATTATCTTGCTAGCAAGTCAATTTCCTCTGAGGATTTGGTAGTGGTT 1043
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 712 CCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTTCCTCAGAGGACTTGGTCGTGGTT 771
Query 1044 TCTCCTGATGTTGGTGGAGTAGCCAGGGCACGTGCATTTGCTAAGAAATTATCTGATGCA 1103
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 772 TCTCCTGATGTTGGTGGAGTAGCCAGGGCACGTGCTTTTGCAAAGAAATTATCAGATGCG 831
Query 1104 CCACTTGCCATTGTCGATAAAAGGCG-TCACGGCCACAATGTCGCTGAGGTCATGAACCT 1162
|||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||
Sbjct 832 CCACTTGCCATTGTCGATAAAAGGCGTTCA-GGACACAATGTTGCTGAGGTCATGAACCT 890
Query 1163 AATCGGTGATGTTAAAGGGAAGGTGGCAGTAATGGTGGATGATATTATTGATACAGCTGG 1222
||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 891 AATTGGTGATGTAAAAGGGAAGGTGGCAGTAATGGTGGATGATATGATTGATACCGCTGG 950
Query 1223 AACCATTGTGAAAGGAGCAGCTCTT-TTACACGAGGAGGGTGC-ACGTGAGGTTTACGCT 1280
||||||||| |||||||||||| || |||||| |||| ||||| | | ||||| || ||
Sbjct 951 AACCATTGTAAAAGGAGCAGCT-TTGTTACACCAGGAAGGTGCTA-GGGAGGTCTATGCG 1008
Query 1281 TGCTGTACACACGCTGTTTTCAGTCCTCCTGCGATAGAGCGGTTATCAAGCGGTTTGCTG 1340
||||| ||||| ||||||||||| || || |||||||| || |||||| | ||||||||
Sbjct 1009 TGCTGCACACATGCTGTTTTCAGCCCGCCAGCGATAGAACGATTATCAGGGGGTTTGCTT 1068
Query 1341 CAAGAAGTGATAGTGACGAATACTTTACCAGTAGCGGAGAAGAATTACTTCCCGCAGTTA 1400
||||||||||||||||| || || ||||||||||| || |||||||||||||||||||||
Sbjct 1069 CAAGAAGTGATAGTGACAAACACATTACCAGTAGCAGAAAAGAATTACTTCCCGCAGTTA 1128
Query 1401 ACGATATTATCGGTGGCTAATCTTCTGGGTGAGACCATTTGGCGTGTCCATGATGATAGC 1460
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 ACAATATTATCGGTGGCTAATCTTCTGGGTGAGACCATTTGGCGTGTCCATGATGATAGT 1188
Query 1461 TCCGTTAGTAGTATTTTCCTTTGA 1484
||||| ||||| ||||||||||||
Sbjct 1189 TCCGTCAGTAGCATTTTCCTTTGA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5