BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32400.1
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473428 jgi|Araly1|473428|fgenesh2_kg.1__3382__AT1G32400.1 1775 0.0
> Ahg473428 jgi|Araly1|473428|fgenesh2_kg.1__3382__AT1G32400.1
Length=1237
Score = 1775 bits (961), Expect = 0.0
Identities = 1085/1143 (95%), Gaps = 15/1143 (1%)
Strand=Plus/Plus
Query 227 TAAGTCGTGAAAACaaaaaaaaGATGGCTTGTAGAGGTTGTTTGGAGTGTTTGTTGAAGT 286
||||||||| ||||| || ||||| ||| |||||||||||||||||||||||||||||
Sbjct 103 TAAGTCGTG---ACAAATAAGAGATGACTTTTAGAGGTTGTTTGGAGTGTTTGTTGAAGT 159
Query 287 TACTCAACTTTCTCCTGGCTGTTGCTGGACTTGGCATGATTGGTTATGGTATCTATTTAT 346
||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 160 TACTCAACTTTCTGCTGGCTGTTGTTGGACTTGGCATGATTGGTTATGGTATCTACTTAT 219
Query 347 TCGTTGAGTACAAGAGAGTTACCGATAATTCTGTTACATTCGATTTGACTAATGGAGATC 406
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 220 TTGTTGAGTACAAGAGAGTTACCGATAATTCTGTTACATTCGATTTGACAAATGGCGATC 279
Query 407 AAAGTTACGTTTCGTTTGGGAGGCCTATT-CTTATGGCTGTGTCACTGTCTTCTAATATC 465
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 280 AAAGTTACGTTTCGTTTGGGAGGCCT-TTGCTTATGGCTGTGTCACTGTCTTCTAATGTC 338
Query 466 TTTGACAATCTTCCCAAAGCGTGGTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTC 525
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 339 TTTGACAATCTTCCCAAAGCCTGGTTCATATACTTGTTCATTGGTATCGGTGTGGCTCTC 398
Query 526 TTTGTTATTTCTTGCTGTGGCTGTGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCT 585
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 399 TTTGTTATTTCTTGCTGTGGCTGCGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCT 458
Query 586 TGCTACTCTCTTCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCGCAGCATTTATT 645
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TGTTACTCTCTCCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCGCAGCATTTATT 518
Query 646 TTCTTCGATAACAGCTGGAGAGATGAACTTCCTTCTGACAGGACTGGAAACTTCGATACG 705
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTCTTCGATCACAGCTGGAGAGATGAACTTCCTTCTGACAGGACTGGAAACTTCGATACA 578
Query 706 ATATATAATTTCCTTAGAGAGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTT 765
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 ATATATAATTTCCTGAGAGAGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTT 638
Query 766 GTTTTCGAGGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGCTAATACACCAGCA 825
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 639 GTTTTCGAGGCTTTACTCTTTTTGCTTGCCCTTATGGTTAGGGCAGCTAATACACCACCA 698
Query 826 GAGTATGACAGTGATGATGAATATCTTGCTCCAAGGCAACAAATCAGGCAGCCATTCATC 885
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 699 GAGTATGACAGTGATGATGAATATATAGCTCCAAGGCAACAAATCAGGCAGCCATTCATC 758
Query 886 AACCGCCAAGCCGCCCCTGTCACTGGTGTCCCAGTTGCTCCTACTTTGGACCAACGCCCA 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 AACCGCCAAGCCGCCCCTGTCACTGGTGTCCCAGTTGCTCCTACTTTGGACCAACGCCCA 818
Query 946 AGCCGCAGTGACCCTTGGAGTGCACGTATGAGGGAAAAGTATGGGCTTGACACATCTGAG 1005
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AGCCGCAATGACCCTTGGAGTGCACGTATGAGGGAAAAGTATGGGCTTGACACATCTGAG 878
Query 1006 TTCACATACAATCCCTCAGAGTCACACCGGTTCCAGCAAATGCCAGCGCAACCAAACGAA 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 TTCACATACAATCCCTCAGAGTCACACCGGTTCCAGCAAATGCCAGCGCAACCAAACGAA 938
Query 1066 GAAAAGGGCCGATGCACCATCATGTGAGTCCATTTT-AAAAGTCTTGAAGAGTTCAGTTA 1124
|||||||||||||||||||||||||||||||||||| |||||| | ||| | ||| | |
Sbjct 939 GAAAAGGGCCGATGCACCATCATGTGAGTCCATTTTTAAAAGT-T-GAAAAATTCCGCCA 996
Query 1125 ATTCTCTTTTCCTGTGTCTTTATTATTTCTGCGTGTAACAATCAA-GAGTGTCAGTAAAA 1183
||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 997 ATTCTCTTTTCAAGTGTCTTTATTATATCTGCGTGTAACAATCAAAGAGTGTCAGTAAAA 1056
Query 1184 GTAGGATTC-TTGTTTCTGGGTTGATGATGACTCT-AGCATTTGAGATCTCTAATCAACC 1241
|||| ||| ||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1057 TTAGGGTTCCTTGTTTCTGGGTTGATGATGACTCTTAGCACTTGAGATCTCTAATCAACC 1116
Query 1242 TAGTCACGGTCTCAAAACTCATTTGTTGTGTCTGTGTAGTCTTTTGTAAGGA-TTCACCA 1300
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1117 TAGTCACGGTCTCAAAACTCATTTGTTGTGTCTGTGTAGTCTTTTGTAAGGACTTCTGCG 1176
Query 1301 T-TATGAATATTCATCTTGGTTCCCAGTCTGATCCAGTCCTATGTTTCTTATTATATATA 1359
| || ||| | |||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1177 TGTAACAAT-T-CATCTTGGTTCCCAGTTTGATTCAGTCCTATGTTTCTTATTATATATA 1234
Query 1360 AAA 1362
|||
Sbjct 1235 AAA 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5