BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32420.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473435 jgi|Araly1|473435|fgenesh2_kg.1__3389__AT1G32420.1 1190 0.0
Ahg949683 jgi|Araly1|949683|scaffold_801570.1 106 3e-22
> Ahg473435 jgi|Araly1|473435|fgenesh2_kg.1__3389__AT1G32420.1
Length=893
Score = 1190 bits (644), Expect = 0.0
Identities = 817/900 (91%), Gaps = 14/900 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAGAGGAAACGAAGAGAACAACCACAAGACCTCCTCATCATCGTCTACACAACGT 60
||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct 1 ATGGAGAGAGGAAACGAAGAGAACAACCACAAGACCTCCTCACCATCGTCTACGCAACTT 60
Query 61 CTTAGCCGCCGTAAAATCTCAGCCGGAGAAAAGTCCGGCAACGTCAATATCCCTCTGGAT 120
||| || ||||| |||||||| |||||||||||| || | | ||||||||||||||||||
Sbjct 61 CTTCGCTGCCGTGAAATCTCAACCGGAGAAAAGTGCGTCGATGTCAATATCCCTCTGGAT 120
Query 121 CTAACGGTGGAGATACTCAAGAAACTACCGGCAAAATCTCTCTTGAGGTTTCAATGCGTC 180
| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 121 CAAACGGTGGAGATACTCAAGAAACTACCGGCAAAGTCCCTCTTGAGGTTTCAATGCGTC 180
Query 181 TCGAAGCAATGGTTATCAATCATCAGCAGCCGTAGAGACTTCATAGACTCGATCGTGACT 240
|||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TCGAAGGAATGGTTATCAATTATCAGCAGCCGTAGAGACTTCATTGACTCGATCGTGACT 240
Query 241 CGATCTTTGACTCAGCCACCACCGCGTGATATCAAACTCATCTTTCACCACCAAGTTCTT 300
|| |||||||||||| | ||||| ||||||| |||||||||||| |||||||||| |
Sbjct 241 CGTTCTTTGACTCAGTCGCCACCACGTGATACCAAACTCATCTTCCACCACCAAG---TA 297
Query 301 TATCCGGGACCTCACTTCTTCATCTTCTCGTCTACTTACCCTCAAAATACAGACAAAGAA 360
|| | |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GATACTGGACCTAATTTCTTCATCTTCTCGTCTACTTACCCTCAAAATACAGACAAAGAA 357
Query 361 TCATTAACAACCAGAGCCAGCTCGTATCACTATGTCCGTGGCTTGATTTGTTGTTGGTCA 420
||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 358 TCATTAACAACTAGAGCCGGATCGTATCACTATGTCCGTGGCTTGATTTGTTGTTGGTTA 417
Query 421 CACTGTCCTACTACGGTAGACATATATAACCCTACCACGAGGCAGTACTATACCGTACCG 480
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GACTTTCCTACTACGGTAGACATATATAACCCTACCACGAGGCAGTACTATACCGTACCG 477
Query 481 GATACTAACCGGTACCAATACATAGAAACTTGCTTCTTTGGATACGACCCTGTCGAAAAT 540
||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 478 GATACGAACCGGTACCAATACATAGACACTTGCTTCTTTGGATACGACCCTCTCGAAAAT 537
Query 541 CAATACAAAGTAATGGTCTTACCAAAATACTATATGGAGGAGTCGCCTTGTCAAGTATTC 600
|||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||
Sbjct 538 CAATACAAAGTAATGGTCTTACCAAAGTACGATATGGAGGAGAAGCCTTGTCAAGTATTT 597
Query 601 ACAGTGGGAGATCCCATAGAGAAGCCTTGGAGAGACATCCAAGGCATTGGAGTTCACTTT 660
||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||
Sbjct 598 ACAGTGGGAGATCCCATGGAGAAGCCCTGGAGAGACATCCCAGGCATTGGACTTCACTTT 657
Query 661 CTTTT-GAAAGATGCTGTTTGCATCAACGGTGTT-ATCTATTACC-AGGCAACTAATGAA 717
| || ||| |||| |||||||||||||| ||| |||||||||| || ||| |||| ||
Sbjct 658 CCATTAGAAC-ATGCGGTTTGCATCAACGG-GTTTATCTATTACCGAG-CAAGTAATAAA 714
Query 718 TAT-G-G-TTCCACATATTTCTTGGTGAGTTTTGATGTTAGGTCCGAGAAATTTAATCAT 774
|| | | ||| || | ||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 715 CATCGCGGTTCTACTTTTTTCTTGGTGAGTTTTGATGTAAGGTCAGAGAAGTTTAATCAT 774
Query 775 GTCAAGGCACCGAAAATACTGACGGATCATCCTTGCACTTTGATAAACTATCAAGGGAAG 834
|| ||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 775 GTAAAGGCTCCGGAAATACTGATGGATCACCCTTGCACTTTGATAAACTATCAAGGGAAG 834
Query 835 TTAGGACTTATAATGTGTTGCAAGAAGGGCT-TGGAAATTTGGGTTATGGAGGATGCTGA 893
|||||| |||| ||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 835 TTAGGATTTATCATGTGTTGCAAGAAGGG-TGTGGCAATTTGGGTTATGGAGGATGCTGA 893
> Ahg949683 jgi|Araly1|949683|scaffold_801570.1
Length=924
Score = 106 bits (57), Expect = 3e-22
Identities = 157/202 (78%), Gaps = 19/202 (9%)
Strand=Plus/Plus
Query 587 CTTGTCAAGTATTCACAGTGGGAGATCCCATAGAGAAGCCTTGGA-GAGACATCCAA--- 642
|||||| ||| |||||| |||||||||||| | ||||| |||| |||| || |||
Sbjct 492 CTTGTCGAGTTTTCACATTGGGAGATCCCAAAAAGAAG---TGGATGAGA-ATTCAATGC 547
Query 643 GGCATTGG-AGTTCACTTT-CTTTTGAAAGATGCTGTTTGCATCAACGGTGTTATCTATT 700
|||||||| || ||||||| | || || | |||| ||||||||||| || | |||||||
Sbjct 548 GGCATTGGAAG-TCACTTTCCATTAGATA-ATGCAGTTTGCATCAATGGGGCAATCTATT 605
Query 701 ACCAGGCAAC--TAATGAATATGGTTC-CA-CATAT-TTCTTGGTGAGTTTTGATGTTAG 755
|| | ||||| |||||| | | | | | | || ||||||||||| ||||||||
Sbjct 606 ACAAAGCAACGAAAATGAA-ACCGAACGAAGGTTCTGTT-TTGGTGAGTTTCGATGTTAG 663
Query 756 GTCCGAGAAATTTAATCATGTC 777
||||||||||||||||||||||
Sbjct 664 GTCCGAGAAATTTAATCATGTC 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5