BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32430.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913058 jgi|Araly1|913058|Al_scaffold_0001_3312 765 0.0
Ahg922328 jgi|Araly1|922328|scaffold_103609.1 457 1e-127
> Ahg913058 jgi|Araly1|913058|Al_scaffold_0001_3312
Length=1158
Score = 765 bits (414), Expect = 0.0
Identities = 506/550 (92%), Gaps = 8/550 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAATAAGGAGAAGCTTCCATGGGATTTGGAGGAAGAGATCCTATCTCGTGTCCCT 60
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 ATGGCGAATAAGGAGAAGCTTCCATGGGATATGGTGGAAGAGATCCTATCTCGTGTCCCT 60
Query 61 CCTACTTCTCTTGACCGATTCAAAACCGTTTGCAAACGATGGAACGCTCTCTTCAACGAC 120
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTACTTCTCTTGTCCGATTCAGAACCGTTTGCAAACGATGGAACGCTCTCTTCAACGAC 120
Query 121 AAGACGTTCATCAACAATCACAAGATGACGTTTCAATTCGTTTTATCAACTAGATCCAAG 180
||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||
Sbjct 121 AAGACGTTCATCAACAACCACAAGATGACGTTTCAATTTATTTTAACAACTACATCCAAG 180
Query 181 ATTTATTCAGTAAGCGTCAATCCCAAGGTAGAGGTGCGTGAGTTAACCTTAAATAATCCC 240
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 181 ATTTATTCGGTAAGCGTCAAACCCAAGGTAGAGGTGCGTGAGTTAACCTTAAATACTCCC 240
Query 241 GGTTTAAAAGCTCAAAGACATAAAAAT-TTGTTTGCTACCAGTGGATTATTGCTTTGTGA 299
|||||||||||||||| || | || | ||| ||| |||||||||||| |||||||||||
Sbjct 241 GGTTTAAAAGCTCAAATACCTGAAT-TCTTGGTTGATACCAGTGGATTCTTGCTTTGTGA 299
Query 300 CGTGGGTAATGGAGCCGTGGTTTGGAACCCTTGGTTAAAACAGTCTAGATGCATCAAGCT 359
||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 300 CGTGGGTAATGGAGCTGTGGTTTGGAACCCTTGGTTAAGACAGACTAGATGCATCGAGCC 359
Query 360 CGAGGTTAACGAACCTAGTTTGGATTTTCTTGGCATAGGTTATGATAATAATAAGAGAGT 419
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 CGAGGTTAACCAACCTAGTTTGGATTTTGTTGGCATAGGTTATGATAATAATAAGAGAGT 419
Query 420 TGAGGAAATTGTTTACAAAACACTTTCGGTTTATATGAAAGACTTAGGCTCTCAAT-ATA 478
|||||||||||||||||| || ||||||||||||||||| |||||||||||| | |||
Sbjct 420 TGAGGAAATTGTTTACAAGACCCTTTCGGTTTATATGAAGGACTTAGGCTCT-AGCGATA 478
Query 479 CGTGGAAAATCCATGACTTTGCCTCCGATACGTGGATAGACCAAGAGATT-GAA-AAGAC 536
|||||||||||||||||||||||||||||||||||| ||| |||| || || ||| |
Sbjct 479 CGTGGAAAATCCATGACTTTGCCTCCGATACGTGGAAAGATGAAGAT-TTAGACGAAG-C 536
Query 537 AAAATATAGT 546
||||||||||
Sbjct 537 AAAATATAGT 546
Score = 523 bits (283), Expect = 9e-148
Identities = 384/432 (89%), Gaps = 9/432 (2%)
Strand=Plus/Plus
Query 611 GAA-AATTCTTCAAGTTTTGTGATCTACCAAGCGGGAAGAACCGTCG-TCGTGATGCTCT 668
||| ||||||| |||||||||||||||||||| ||||||||| | | | | ||||||||
Sbjct 679 GAAGAATTCTTGAAGTTTTGTGATCTACCAAGTGGGAAGAACAAT-GCTTGCGATGCTCT 737
Query 669 TGCCCTTAGGGTTTTTAGGGAAGATAGGTTTTCGTTGTTGAGGCAGTGTCATGTAACAAA 728
|| | | |||||||||||||||||| | ||||||||||||| |||||| |||||||||||
Sbjct 738 TGTCGTAAGGGTTTTTAGGGAAGATCGTTTTTCGTTGTTGAAGCAGTGCCATGTAACAAA 797
Query 729 GAAGATTAAGATTTGGGTGACAAAGAACAAGATTGATAATCGGTATGGTGGGGATGTGAA 788
|||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 798 GAAGATAAAGATTTGGGTGACCAAGAACAAGATTGATAATCAGTACGGTGGGGATGTGAA 857
Query 789 ATGGATGAGTTTCATGGAGGTGTCAATTCCTACCATGCCGGATTTAGAACATCCCAAATT 848
|||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 858 ATGGATGAGTTTCATGGAGGTGTCAATTCCTAACATGCCGGATTTAGTACAGACCAAATT 917
Query 849 -TAACTCTCAGCCAAGTTACTTCATTGATGATAAAAGGCTCGTCATTTGTTCTTGTGATG 907
|| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 918 CTA-CTATCAGCCAAGTTACTTCATTGACGATAAAAGGCTCGTCATTTGTTCTTGTGATG 976
Query 908 AAACTGGTCGGGCTTGGATCTATGTTGTGGGGGGAA-ATAAGTTGGTCAGTAAAACCCAA 966
||||||||| ||| |||||||||||| |||||| || | |||||| ||| |||| |
Sbjct 977 AAACTGGTCAGGCATGGATCTATGTTTTGGGGG-AAGAGAAGTTGATCAATAAAGTTCGC 1035
Query 967 TTGGATTCTGTGGTTGATCCTTGGCCTTTGCATTGTACCTATTTTCC-AAGTTTGGTCCT 1025
||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 1036 TTGGATTCTGTGGCCGATCCTTGGCCTTTGTATTGTACCTATTTTCCCAA-TTTGGTCCT 1094
Query 1026 GGTTCCTGGAGG 1037
||||||||||
Sbjct 1095 AATTCCTGGAGG 1106
> Ahg922328 jgi|Araly1|922328|scaffold_103609.1
Length=800
Score = 457 bits (247), Expect = 1e-127
Identities = 335/377 (89%), Gaps = 8/377 (2%)
Strand=Plus/Plus
Query 174 ATCCAAGATTTATTCAGTAAGCGTCAATCCCAAGGTAGAGGTGCGTGAGTTAACCTTAAA 233
||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 107 ATCCAAGATTTATTCGGTTAGCGTCAATCCCAAGGTAGAGGTGCGTGAGTTAACCCTAAA 166
Query 234 TAATCCCGGTTTAAAAGCTCAAAGACATAAAAATTTGTTTGCTACCAGTGGATTATTGCT 293
|| ||||||||||||| |||| | || || || ||| ||| |||||||||||| |||||
Sbjct 167 TACTCCCGGTTTAAAACCTCAGATACCTATAAGCTTGGTTGATACCAGTGGATTCTTGCT 226
Query 294 TTGTGACGTGGGT-AATGGAGCCGTGGTTTGGAACCCTTGGTTAAAACAGTCTAGATGCA 352
||||| | ||||| || |||||||||||||||||||||||||||| |||| |||||||||
Sbjct 227 TTGTGGCATGGGTGAA-GGAGCCGTGGTTTGGAACCCTTGGTTAAGACAGACTAGATGCA 285
Query 353 TCAAGCTCGAGGTTAACGAACCTAGTTTGGATTTTCTTGGCATAGGTTATGATAATAATA 412
|||||| |||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct 286 TCAAGCCCGAGGTTAACCAACCTAGTTTAGATTTTATTGGCATAGGTTATGATAATAATA 345
Query 413 AGAGAGTTGAGGAAATTGTTTACAAAACACTTTCGGTTTATATGAAAGACTTAGGCTCT- 471
||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct 346 AGAGAGTTGAGGAAATTGTTTACAAGACCCTTTCCGTTTATATGAAGGACTTAGGCTCTA 405
Query 472 CAATATACGTGGAAAATCCATGACTTTGCCTCCGATACGTGGATAGACCAAGAGATT-GA 530
| ||||||||||||||||||||||||| ||||||||||||| ||| |||| || ||
Sbjct 406 CCG-ATACGTGGAAAATCCATGACTTTGCTTCCGATACGTGGACAGATGAAGAT-TTAGA 463
Query 531 A-AAGACAAAATATAGT 546
||| |||||||||||
Sbjct 464 CGAAG-CAAAATATAGT 479
Score = 124 bits (67), Expect = 1e-27
Identities = 71/73 (97%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATAAGGAGAAGCTTCCATGGGATTTGGAGGAAGAGATCCTATCTCGTGTCCCT 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 21 ATGGCGAATAAGGAGAAGCTTCCATGGGATTTGGTGGAAGAGATCCTATCTCGTGTCTCT 80
Query 61 CCTACTTCTCTTG 73
|||||||||||||
Sbjct 81 CCTACTTCTCTTG 93
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5