BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32440.1
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473436 jgi|Araly1|473436|fgenesh2_kg.1__3390__AT1G32440.1 2977 0.0
> Ahg473436 jgi|Araly1|473436|fgenesh2_kg.1__3390__AT1G32440.1
Length=1888
Score = 2977 bits (1612), Expect = 0.0
Identities = 1804/1896 (95%), Gaps = 15/1896 (1%)
Strand=Plus/Plus
Query 9 TCTGCATCTCCTCTGTTCCTCAGGTTTCTCTGCTCATGGCTGC-TTATGGTCAAATCTCC 67
||||||||| |||||||||||| | ||||||||| ||||| || ||| ||||||||||||
Sbjct 1 TCTGCATCTGCTCTGTTCCTCA-GATTCTCTGCTAATGGCGGCGTTA-GGTCAAATCTCC 58
Query 68 TCGGGAATGACTGTAGATCCTCAGGTTCTCTCTTCCTCCAGAAACATTGGAGTTTCCCTA 127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 59 TCGGGAATGACTGTAGATCCTCAGGTTCTCTCTTCCTCCAGAAACATTGGAGTTTCACTA 118
Query 128 TCACCTCTCCGGAGAACACTAATCGGCGCCGGAGTTAGGTCTACTAGTATCTCTCTCCGT 187
|||||||||||| ||||||||||||||||||||| ||||||||| |||||| ||||||
Sbjct 119 TCACCTCTCCGGCGAACACTAATCGGCGCCGGAGGTAGGTCTAC---TATCTCCCTCCGT 175
Query 188 CAATGTTCTCTCTCCGTTAGATCGATTAAAATCTCCGAAGATAGCCGCAAACCTAAAGCT 247
|||||||||||||||||||||||||| |||||| ||||||||| ||||||| |||||||
Sbjct 176 CAATGTTCTCTCTCCGTTAGATCGATCAAAATCACCGAAGATAACCGCAAAGTTAAAGCT 235
Query 248 TATGCAGAGAACGGTGCTTTTGATGTGGGAGTT-TTGGA-TT-CTTCATCATATAGATTG 304
||||| || ||||| ||||| ||| | ||| || || | || ||||||||||||||||
Sbjct 236 TATGCTGATAACGGCGCTTTCGATAT-GGA-TTCTT-CAGTTGATTCATCATATAGATTG 292
Query 305 GCTGATTCAAGAACAAGTAGTAATGATTCAAGGAGGAAGACTAAGATTGTGTGTACGATT 364
|| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 293 GCGGATTCAAGAACAAGTAATAATGATTCGAGGAGGAAGACTAAGATTGTGTGTACGATT 352
Query 365 GGACCGTCTTCGAGTTCTAGGGAAATGATTTGGAAACTCGCGGAAGCTGGAATGAATGTG 424
|||||||| ||||||||| |||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 353 GGACCGTCATCGAGTTCTCGGGAGATGATTTGGAAGCTCGCGGAAGCGGGAATGAATGTG 412
Query 425 GCTCGTTTGAATATGTCTCATGGTGATCATGCTTCTCATCAGATA-ACTATTGATTTAGT 483
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 413 GCTCGTTTGAATATGTCTCATGGTGATCATGCTTCTCATCAGA-AGACTATTGATTTAGT 471
Query 484 TAAGGAGTATAATTCTTTGTTTGTTGACAAAGCTATTGCTATTATGTTGGATACAAAGGG 543
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TAAGGAATATAATTCTTTGTTTGTTGACAAAGCTATTGCTATTATGTTGGATACAAAGGG 531
Query 544 TCCTGAGGTTCGAAGCGGGGATGTACCGCAGCCGATATTTCTTGAAGAGGGTCAAGAGTT 603
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 532 TCCTGAGGTTCGAAGCGGGGATGTACCTCAGCCGATATTTCTTGAAGAGGGTCAAGAGTT 591
Query 604 TAACTTTACTATCAAGAGAGGTGTTTCGCTTAAAGACACTGTTAGTGTAAATTATGATGA 663
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TAATTTTACTATCAAGAGAGGTGTTTCGCTTAAAGACACTGTTAGTGTAAATTATGATGA 651
Query 664 TTTTGTGAACGATGTTGAAGTTGGGGATATACTTTTGGTGGATGGTGGAATGATGTCGTT 723
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 652 TTTTGTTAATGATGTTGAAGTTGGGGACATACTTTTGGTGGATGGTGGAATGATGTCGTT 711
Query 724 AGCTGTTAAATCAAAGACGAGTGATTTGGTGAAGTGTGTGGTTATTGATGGTGGAGAGCT 783
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 712 AGCTGTTAAATCAAAGACGAGTGATTTGGTGAAGTGTGTGGTTATTGACGGTGGAGAGCT 771
Query 784 TCAATCTAGACGTCACTTGAATGTTCGAGGAAAGAGTGCGACTCTTCCATCCATTACAGA 843
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||
Sbjct 772 TCAATCTAGGCGTCACTTGAATGTTAGAGGAAAGAGTGCGACTCTTCCTTCCATAACAGA 831
Query 844 CAAAGATTGGGAAGACATAAAATTTGGAGTGGACAACCAAGTCGATTTCTACGCCGTCTC 903
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 832 CAAAGATTGGGAAGATATAAAATTTGGTGTGGACAACCAAGTCGATTTCTATGCCGTCTC 891
Query 904 CTTTGTTAAGGATGCTAAAGTTGTCCATGAGTTGAAGAACTATCTCAAAACCTGCAGTGC 963
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 892 CTTTGTTAAGGATGCTAAAGTTGTTCATGAGTTGAAGAACTATCTCAAAACCTGCAGTGC 951
Query 964 AGACATATCGGTGATTGTGAAAATTGAAAGTGCAGACTCTATAAAGAATCTTCCTTCTAT 1023
|| |||||||| || ||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 952 GGATATATCGGTAATCGTGAAGATTGAAAGCGCTGACTCTATAAAGAATCTTCCTTCTAT 1011
Query 1024 CATATCTGCTTGTGATGGGGCAATGGTTGCTCGTGGAGATCTTGGAGCTGAACTTCCCAT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CATATCTGCTTGTGATGGGGCAATGGTTGCTCGTGGAGATCTTGGAGCTGAACTTCCCAT 1071
Query 1084 TGAAGAGGTCCCGTTGTTACAGGAAGAAATAATCAGAAGGTGTAGAAGCATTCATAAACC 1143
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1072 TGAAGAGGTCCCTTTGTTACAGGAAGAGATAATCAGAAGGTGTAGGAGCATTCATAAACC 1131
Query 1144 AGTGATTGTTGCCACAAACATGCTAGAGAGTATGATTAATCATCCAACGCCTACAAGAGC 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 AGTGATTGTTGCCACAAACATGCTAGAGAGTATGATTAATCATCCAACGCCTACAAGAGC 1191
Query 1204 TGAAGTCTCTGACATTGCAATTGCAGTACGTGAAGGCGCAGATGCTATCATGCTTTCTGG 1263
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1192 TGAAGTCTCTGACATTGCAATTGCAGTACGTGAAGGTGCAGATGCAATCATGCTTTCTGG 1251
Query 1264 TGAAACCGCACATGGAAAGTTTCCGCTGAAAGCTGTTAACGTAATGCATACTGTGGCGTT 1323
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1252 TGAAACCGCACACGGAAAGTTTCCGCTCAAAGCTGTTAACGTAATGCATACTGTGGCATT 1311
Query 1324 GAGAACCGAGGCAAGTCTACCTGTCAGAACCTCGGCATCCCGTACCACTGCTTACAAGGG 1383
|||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1312 GAGAACTGAGGCAAGTCTACCTGTCAGAACCTCTGCAACCCGTACCACTGCTTACAAGGG 1371
Query 1384 TCACATGGGCCAAATGTTTGCTTTTCATGCTTCTATAATGGCAAATACACTGAGCTCACC 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TCACATGGGCCAAATGTTTGCTTTTCATGCTTCTATAATGGCAAATACACTGAGCTCACC 1431
Query 1444 GCTAATTGTATTTACGAGAACCGGATCCATGGCAGTGCTTCTAAGCCACTACCGCCCATC 1503
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1432 GCTAATTGTATTCACGAGAACCGGATCCATGGCAGTGCTTCTAAGCCATTACCGCCCATC 1491
Query 1504 TGCAACAATTTTCGCCTTCACAAACCAGAGAAGAATAATGCAAAGGCTTGCTCTTTATCA 1563
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1492 CGCAACAATTTTCGCCTTCACGAACCAGAGAAGGATAATGCAAAGGCTGGCTCTTTATCA 1551
Query 1564 AGGTGTCATGCCTATATATATGGAGTTCTCGGATGATGCAGAAGATACATATGCCCGGTC 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 AGGTGTCATGCCTATATATATGGAGTTCTCGGATGATGCAGAAGATACATATGCCCGGTC 1611
Query 1624 TCTCAAACTCTTACAGGACGAGAATATGCTCAAGGAAGGACAACATGTAACTCTTGTCCA 1683
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1612 TCTGAAACTCTTACAGGACGAGCATATGCTCAAGGAAGGACAACATGTAACTCTTGTCCA 1671
Query 1684 AAGTGGCTCGCAACCCATTTGGCGTGAAGAATCAACACATCTCATACAAGTCCGTAAGAT 1743
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 AAGCGGCTCGCAACCCATTTGGCGTGAAGAATCAACACATCTCATACAAGTCCGTAAGAT 1731
Query 1744 AAAGATAGGTGGATGATGTTTTTACTTCTTGAGCTACACAACATCTTGCTTTTACTCAGC 1803
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1732 AAATATAGGTGGATGATGTTTTTACTTCTTCAGCTACACAACATCTTGATTTTACTCAGC 1791
Query 1804 TTTCTTTCTCTTACACAGTTCGATCCATAtttttttGAATCACTCACAGTGAATCAAACA 1863
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1792 TTTCTTTCTCTTACACACTTTTATCCATATTTTTTTGAATCACTCACAGTGAATCAAACA 1851
Query 1864 ACCATATAAA-ATTTTAAGTTATTGAAGCttttttt 1898
|||||||| | |||||||||||||||||||||||||
Sbjct 1852 ACCATATATATATTTTAAGTTATTGAAGCTTTTTTT 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71685841090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5