BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32450.1
Length=2195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313816 jgi|Araly1|313816|fgenesh1_pm.C_scaffold_1002596 2955 0.0
> Ahg313816 jgi|Araly1|313816|fgenesh1_pm.C_scaffold_1002596
Length=1848
Score = 2955 bits (1600), Expect = 0.0
Identities = 1767/1849 (96%), Gaps = 5/1849 (0%)
Strand=Plus/Plus
Query 164 ATGTCTTGCCTAGAGATTTATAACAAAGACACGATgaagaagaaagaag--g-agaagaa 220
|||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 1 ATGTCTTGCCTAGAGATTTATAACAAAGACACAATGAAGAAGAAAGAAGAAGAAGAAGAA 60
Query 221 gaaacaagagaTGGGACAGTGGATTACTATGGTCGTCCCTCTATTCGTTCTAACTCAGGC 280
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAACAAGAGATGGAACAGTGGATTACTATGGTCGTCCCTCTATTCGTTCTAACTCAGGC 120
Query 281 CAATGGGTTGCTGGCATCGTCATTCTTCTGAACCAGGGGCTGGCTACACTAGCCTTCTTT 340
|||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 121 CAATGGGTTGCTGGCATCGTCATTCTCCTGAACCAGGGGTTGGCGACACTAGCCTTCTTT 180
Query 341 GGAGTTGGAGTGAACTTGGTGCTCTTCCTAACTCGCGTTTTGCAGCAGAACAACGCAGAC 400
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 181 GGAGTTGGAGTGAATTTGGTGCTCTTCCTAACGCGCGTTTTGCAGCAGAATAACGCAGAC 240
Query 401 GCAGCTAACAACGTTAGCAAATGGACAGGGACTGTTTATATCTTCTCATTGGTTGGAGCG 460
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GCAGCGAACAACGTTAGCAAATGGACAGGGACTGTTTATATCTTCTCATTAGTTGGAGCG 300
Query 461 TTTCTCAGCGATTCGTATTGGGGTCGTTACAAGACTTGTGCTATCTTCCAAGTCATTTTT 520
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 301 TTTCTCAGCGATTCGTATTGGGGTCGTTACAAGACTTGTGCTATATTTCAAGTCATTTTT 360
Query 521 GTCATTGGACTTTCATCGCTATCGCTATCATCATACATGTTCTTGATTAGACCAAGAGGT 580
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 361 GTCATTGGACTTTCATCGCTATCGCTATCATCGTACATGTTCTTGATTAGACCACGAGGT 420
Query 581 TGTGGGGACGAAGTCACGCCTTGTGGTTCACATTCCATGATGGAGATCACAATGTTCTAC 640
|| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 TGCGGGGATGAAGTCACTCCTTGTGGTTCGCATTCCATGATGGAGATCACAATGTTCTAC 480
Query 641 TTCTCGATCTACTTGATCGCATTGGGATATGGCGGTTACCAACCAAACATTGCAACGCTT 700
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTTCGATCTACTTGATCGCATTGGGATATGGCGGTTACCAACCAAACATTGCAACGCTT 540
Query 701 GGAGCGGATCAGTTCGATGAGGAGCATCCTAAAGAAGGGTACTCGAAGATTGCGTTTTTC 760
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 GGAGCGGATCAATTCGATGAGGAGCATCCTAAAGAAGGGTACTCAAAGATTGCGTTTTTC 600
Query 761 AGCTACTTTTACCTTGCTTTAAACCTCGGATCGCTCTTTTCGAACACCATCTTGGGGTAT 820
|||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 601 AGCTACTTCTACCTTGCTTTGAACCTCGGATCACTCTTTTCAAACACCATCTTGGGGTAT 660
Query 821 TTTGAGGATGAGGGAATGTGGGCACTCGGGTTTTGGGCATCCACTGGCTCTGCTATCATT 880
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 661 TTTGAGGATGAGGGAATGTGGGCACTTGGGTTTTGGGCGTCCACTGGTTCTGCTATCATT 720
Query 881 GGGTTGATTCTTTTCCTTGTTGGAACACCGAGATACCGATATTTCAAGCCCACGGGGAAT 940
|| |||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||
Sbjct 721 GGTTTGATTCTTTTCCTCGTTGGAACACCGAGATACCGATATTTTATGCCCACCGGGAAT 780
Query 941 CCTCTTTCGAGGTTTTGCCAAGTTTTGGTCGCTGCAACGAAGAAATCATCGGTGGAGGCA 1000
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTCTTTCGAGGTTTTGCCAAGTTTTGGTCGCTGCAACGAAGAAATCATCGGTGGAGGCG 840
Query 1001 CCATTAAGAGGGAGAGAGGAGATGTATGACGGAGACAGCGAAGGGAAAAATGCTTCAGTT 1060
||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct 841 CCATTAAGAGGGAGAGAGGAGATGTATGATGGAGACAGCCAAGGGAAAAATGTTTCAGAA 900
Query 1061 AACACAGGGAGAAGGATAGTGCATACCGATGAATTCAAGTTCTTGGACAAAGCAGCGTAC 1120
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 AATACAGGGAGAAGGATAGTGCATACCGATGAATTCAAATTCTTGGACAAAGCAGCGTAC 960
Query 1121 ATCACAGCTAGAGATCTAGATGACAAGAAACAAGACTCAGTGAACCCATGGAGGCTCTGT 1180
|||||||| |||||||| |||||||||||||||||| |||| || || ||||||||||||
Sbjct 961 ATCACAGCGAGAGATCTTGATGACAAGAAACAAGACGCAGTTAATCCGTGGAGGCTCTGT 1020
Query 1181 CCAGTGACACAAGTCGAGGAAGTCAAGTGTATTCTTAGACTGATGCCAATTTGGCTCTGC 1240
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1021 CCGGTGACACAAGTCGAGGAAGTCAAGTGCATTCTTAGACTGATGCCAATTTGGCTCTGC 1080
Query 1241 ACTATAATCTACTCAGTCGTCTTCACTCAAATGGCCTCTCTCTTTGTGGAGCAAGGCGCT 1300
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1081 ACTATAATCTACTCAGTCGTCTTCACCCAAATGGCCTCTCTATTTGTGGAGCAAGGCGCT 1140
Query 1301 GCAATGAATACCTCTGTCTCAGATTTCAAAATCCCCCCGGCAAGTATGTCCAGCTTCGAC 1360
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1141 GCAATGAATACCTCTGTCTCGGATTTCAAAATCCCCCCTGCAAGTATGTCCAGCTTCGAC 1200
Query 1361 ATCCTTAGCGTCGCTTTGTTCATATTCCTGTACCGCAGAGTTCTCGAGCCAGTAGCCAAC 1420
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 ATCCTTAGTGTCGCTTTGTTCATATTCCTATACCGCAGAGTTCTCGAGCCAGTAGCCAAC 1260
Query 1421 AGATTCAAAAAGAATGGATCAAAAGGAATCACCGAGCTTCACAGGATGGGAATCGGACTT 1480
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AGATTCAAGAAGAACGGATCAAAAGGAATCACCGAGCTTCACAGGATGGGAATCGGACTT 1320
Query 1481 GTGATTGCTGTCATAGCTATGATTGCAGCCGGGATTGTGGAATGCTATAGGCTTAAGTAT 1540
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1321 GTTATTGCTGTCATAGCTATGATTGCAGCCGGAATTGTGGAATGCTATAGGCTAAAGTAC 1380
Query 1541 GCAGACAAGAGTTGTACTCACTGTGATGGCTCAAGCTCCTTAAGCATCTTCTGGCAGGCT 1600
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GCAGACAAAAGTTGCACTCACTGTGATGGCTCAAGCTCCTTAAGCATCTTCTGGCAGGCT 1440
Query 1601 CCACAATACTCACTCATCGGGGCATCAGAAGTGTTCATGTACGTGGGTCAGCTTGAGTTC 1660
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CCACAATACTCACTAATTGGGGCATCAGAAGTGTTCATGTACGTGGGTCAGCTTGAGTTC 1500
Query 1661 TTCAACGCGCAAACACCAGACGGACTAAAGAGCTTCGGGAGCGCTCTGTGTATGATGTCA 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTCAACGCGCAAACACCAGACGGACTAAAGAGCTTCGGGAGCGCTCTGTGTATGATGTCA 1560
Query 1721 ATGTCAATGGGGAACTTTGTTAGTAGCTTGTTGGTAACAATGGTGGTGAAGATCTCAACA 1780
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1561 ATGTCAATGGGAAACTTTGTGAGTAGCTTGTTGGTGACAATGGTGGTGAAGATCTCTACA 1620
Query 1781 GAGGATCACATGCCTGGTTGGATTCCAAGGAATCTCAACAAAGGTCACTTAGACAGATTC 1840
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1621 GAGGATCACATGCCTGGTTGGATTCCAAGGAACCTCAACAAAGGTCACTTAGACAGATTC 1680
Query 1841 TATTTCCTCCTGGCTGCGTTGAC-GAGCATTGACCTGGTGGTATACATTGCATGTGCAAA 1899
||||||||| ||||||||||||| | ||||||||||||||||||| ||||| ||||||||
Sbjct 1681 TATTTCCTCTTGGCTGCGTTGACCG-GCATTGACCTGGTGGTATATATTGCCTGTGCAAA 1739
Query 1900 ATGGTACAAACCTATACAACTAGAAGGAAAAGATGAGATGCAAGACATGAGTGATGATGA 1959
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GTGGTACAAACCTATAAAACTAGAAGGAAAAGATGAGATGCAAGACATGAGTGATGATGA 1799
Query 1960 CTATGACACCGAGAGTGAAGAGGAACGAGAGAAGGATTCTAAAGTCTAA 2008
| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1800 CGATGACACCGAGAGCGAAGAGGAACGAGAGAAGGATTCTAAAGTCTAA 1848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82617741405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5