BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G32460.1

Length=659
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473438 jgi|Araly1|473438|fgenesh2_kg.1__3392__AT1G32460.1         730    0.0  


> Ahg473438 jgi|Araly1|473438|fgenesh2_kg.1__3392__AT1G32460.1
Length=621

 Score =  730 bits (395),  Expect = 0.0
 Identities = 486/528 (92%), Gaps = 13/528 (2%)
 Strand=Plus/Plus

Query  137  tttttttCCATTACCGTACGCCGAAGAATC-TGC-CCCAAGAAGTTTAAAGGTATTGATG  194
            ||||||| ||||||||||||  || ||||| | |  || |||||||||||||||||||||
Sbjct  100  TTTTTTT-CATTACCGTACGAAGACGAATCAT-CAACC-AGAAGTTTAAAGGTATTGATG  156

Query  195  GAACAACCGAGGAACAACAAGACCTCTCAAGAACAAGCTCGTGAATCGCTCATCGAAATC  254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  157  GAACAACCGAGGAACAACAAGACCTCTCAAGAACAAGCTCGTGAATCGCTCATCGAAATC  216

Query  255  TCCTACACTTCACCCGAGGAAGACGAGGTTATAACCTACTCAGATGTGAAGCCTGTCACC  314
            || ||||||||||| |||||||||||||||||||| | |||||||||||| |||||||||
Sbjct  217  TCTTACACTTCACCGGAGGAAGACGAGGTTATAACGTTCTCAGATGTGAAACCTGTCACC  276

Query  315  TATATCTCAAACGGAAGTGCCAAAGGAAACAAAGATGATGCGGAGAAGCTCAGAGATGAG  374
             |||||||||||||| || ||||| ||||||| ||||||| ||||||||| |||||||||
Sbjct  277  AATATCTCAAACGGAGGTACCAAAAGAAACAAGGATGATGAGGAGAAGCTTAGAGATGAG  336

Query  375  CTGATTTCGATATCCTACGACGAGTCACCGTCGCCTTCACCGGATGTGGATGTAGCTGTT  434
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  337  CTGATTTCGATATCTTACGACGAGTCACCGTCACCTTCACCGGATGTGGATGTAGCTGTT  396

Query  435  TCGCCGACCCTGCCGAACGGTGTATGTCGTGGATAGGAAGTTAATGTACAGCTTGAAGAA  494
            |||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||
Sbjct  397  TCGCCGACCCTGCCTAACGGTATATGTCGTGGATAGGAAGTTTATGTACAGCTTGAAGAA  456

Query  495  GTCTTTACTTTCTTATGCAAAAGACTTTTGGTTTGGTCTAAAAGTT-GACCATTGTTATA  553
            |||||||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||
Sbjct  457  GTCTTTACTTTCTTATGCGAAAGACTTT-GGTTTGGTCTAAAAGTGAGACCATTGTTATA  515

Query  554  TGTTAA--CGTTTCTTCCTTAACTATATGATTGAAAATCAATGAAGTTTCT-TTTA-TTG  609
            ||||||  ||||||| ||| ||||||||||||||||||||||||||||||| |||  |||
Sbjct  516  TGTTAAAACGTTTCT-CCTCAACTATATGATTGAAAATCAATGAAGTTTCTGTTTTGTTG  574

Query  610  TGTGCTTGTTTGACCTGTCTTATATAAAGTTAAAAGCTCTGATGAGTC  657
            |||| || |||||| |||||||||||| ||||||||||||| ||||||
Sbjct  575  TGTGTTTCTTTGACATGTCTTATATAA-GTTAAAAGCTCTGTTGAGTC  621


 Score = 75.0 bits (40),  Expect = 6e-13
 Identities = 55/62 (89%), Gaps = 1/62 (2%)
 Strand=Plus/Plus

Query  1   ATTGTCTACGTGTGAACGAGCTGGCAAAGAATATTAAACCCCTTTTTGGTCaaataaaaa  60
           |||||| |||||||||||||||||||||||||||| ||| | |||   ||||||||||||
Sbjct  1   ATTGTCGACGTGTGAACGAGCTGGCAAAGAATATTTAACTC-TTTAACGTCAAATAAAAA  59

Query  61  aa  62
           ||
Sbjct  60  AA  61



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24169929378


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5