BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32470.1
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922337 jgi|Araly1|922337|scaffold_103618.1 894 0.0
Ahg482500 jgi|Araly1|482500|fgenesh2_kg.4__1560__AT2G35370.1 599 1e-170
Ahg922338 jgi|Araly1|922338|scaffold_103619.1 78.7 6e-14
> Ahg922337 jgi|Araly1|922337|scaffold_103618.1
Length=549
Score = 894 bits (484), Expect = 0.0
Identities = 526/546 (96%), Gaps = 4/546 (1%)
Strand=Plus/Plus
Query 93 aaacaaacaaaccagaa-aaaGGAATGGCACTGAGAATGTGGGCTTCCTCTACAGCAAAT 151
||| ||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 6 AAAAAAAGAAACCAGAAGAAA-AAATGGCATTGAGAATGTGGGCTTCCTCTACAGCAAAT 64
Query 152 GCTCTCAAGCTCTCTTCTTCTGCCTCCAAATCTCATCTCTTGCCAGCTTTCTCCATCTCC 211
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 65 GCTCTCAAGCTCTCTTCTTCTGTCTCCAAATCTCATCTCTTGCCAGCTTTCTCTATCTCC 124
Query 212 AGATGCTTCTCCTCAGTGTTGGAAGGACTTAAGTATGCAAATTCACATGAGTGGGTGAAA 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 AGATGCTTCTCCTCAGTGTTGGAAGGACTTAAGTATGCAAATTCACATGAGTGGGTGAAA 184
Query 272 CATGAAGGCTCAGTTGCTACAATTGGTATCACTGACCATGCGCAGGACCATTTAGGAGAA 331
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 185 CATGATGGCTCAGTTGCTACAATTGGTATCACTGACCATGCCCAGGACCATTTAGGAGAA 244
Query 332 GTTGTGTTTGTGGAGCTGCCTGAAGCAAACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGA 391
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 245 GTTGTATTTGTGGAGCTACCAGAAGCAAACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGA 304
Query 392 GCTGTTGAGAGTGTTAAGGCCACAAGTGAGATTCTATCTCCAATCTCTGGTGAAGTCATT 451
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 305 GCTGTTGAGAGTGTTAAGGCCACAAGTGAGATTCTATCTCCAATCTCCGGTGAAGTCATT 364
Query 452 GAGGTTAACACAAAGCTCACCGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGAT 511
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GAGGTTAACACGAAGCTCACCGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGAT 424
Query 512 GGTTGGATGATAAAGGTGAAACCGAGCAGCCCCGCGGAGTTGGAAGCTCT-GATGGGTCC 570
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 425 GGTTGGATGATAAAGGTGAAACCAAGCAGCCCCGCGGAGTTGGAAGC-CTTGATGGGTCC 483
Query 571 AAAGGAATACACCAAGTTCTGCGAAGAAGAAGACGCTGCTCACTAGGGTTTCTTCGCCTT 630
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 484 AAAGGAATACACCAAGTTCTGCGAAGATGAAGACGCTGCTCACTAGGGTTTCTTCGCCTT 543
Query 631 TTATCT 636
| ||||
Sbjct 544 TCATCT 549
> Ahg482500 jgi|Araly1|482500|fgenesh2_kg.4__1560__AT2G35370.1
Length=784
Score = 599 bits (324), Expect = 1e-170
Identities = 448/507 (88%), Gaps = 11/507 (2%)
Strand=Plus/Plus
Query 115 AATGGCACTGAGAATGTGGGCTTCCTCTACAGCAAATGCTCTCAAGCTCTCTTCTTCTGC 174
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 127 AATGGCACTGAGAATGTGGGCTTCTTCTACAGCAAACGCTCTCAAGCTTTCTTCTTCTGT 186
Query 175 CTCCAAATCTCATCTCTTGCCAGCTTTCTCCATCTCCAGATGCTTCTCCTCAGTGTTGGA 234
||||| ||||||||| | | ||||||||||||| |||||||||||| ||| ||||||
Sbjct 187 TTCCAAGTCTCATCTC-T--CTCCTTTCTCCATCTCTAGATGCTTCTCCACAGGGTTGGA 243
Query 235 AGGACTT-AAGTATGCAAATTCACATGAGTGGGTGAAACATGAAGGCTCAGTTGCTACAA 293
||| || ||||||||||||||||| |||||||| |||||||||||||| ||||| || |
Sbjct 244 GGGA-TTGAAGTATGCAAATTCACACGAGTGGGTTAAACATGAAGGCTCTGTTGCCACCA 302
Query 294 TTGGTATCACTGACCATGCGCAGGACCATTTAGGAGAAGTTGTGTTTGTGGAGCTGCCTG 353
|||| ||||||| |||||| |||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 303 TTGGGATCACTGCCCATGCTCAGGACCATTTAGGTGAAGTGGTGTTTGTGGAACTGCCAG 362
Query 354 AAGCAAACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGAGCTGTTGAGAGTGTTAAGGCCA 413
| | ||| | |||||||| |||||| |||||||||||||| || |||||||| |||||||
Sbjct 363 AGGAAAATACTTCAGTGACCAAAGAGAAAAGCTTTGGAGCAGTGGAGAGTGTGAAGGCCA 422
Query 414 CAAGTGAGATTC-TATCTCCAATCTCTGGTGAAGTCATTGAGGTTAACACA-AAGCTCAC 471
||||||||| || |||| || ||||| |||||| ||||||||||||||| | ||||||||
Sbjct 423 CAAGTGAGA-TCTTATCACCGATCTCAGGTGAAATCATTGAGGTTAACA-AGAAGCTCAC 480
Query 472 CGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGATGGTTGGATGAT-AAAGGTGA 530
|| |||||||| ||||| ||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 481 AGAATCACCTGGCTTGATTAACTCAAGCCCTTATGAAGATGGCTGGATGATCAAA-GTGA 539
Query 531 AACCGAGCAGCCCCGCGGAGTTGGAAGCTCTGATGGGTCCAAAGGAATACACCAAGTTCT 590
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 540 AACCGAGTAGCCCCGCGGAGTTGGAATCTTTGATGGGTCCAAAGGAATACACCAAGTTCT 599
Query 591 GCGAAGAAGAAGACGCTGCTCACTAGG 617
|||| || |||||||| ||||||||||
Sbjct 600 GCGAGGAGGAAGACGCCGCTCACTAGG 626
> Ahg922338 jgi|Araly1|922338|scaffold_103619.1
Length=985
Score = 78.7 bits (42), Expect = 6e-14
Identities = 45/46 (98%), Gaps = 1/46 (2%)
Strand=Plus/Minus
Query 1 ATCTAAAGATAGAACACAAACGTCAATAAAAGCAA-TTAAGATCTC 45
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 46 ATCTAAAGATAGAACACAAACGTCAATAAAAGCAAATTAAGATCTC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29202154422
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5