BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32480.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922338 jgi|Araly1|922338|scaffold_103619.1 470 1e-131
> Ahg922338 jgi|Araly1|922338|scaffold_103619.1
Length=985
Score = 470 bits (254), Expect = 1e-131
Identities = 319/350 (91%), Gaps = 5/350 (1%)
Strand=Plus/Plus
Query 331 CGGGAGCACGAAGTTGTTCCCGGTGTCATAGAGAGTTTTCAGGTGACAATGACAAAGTTC 390
|||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||
Sbjct 357 CGGGAGCACGAAGTTGTTCCCGGTGTCATACAGAGCTTTCAGGTAACAATGACTAAGTTC 416
Query 391 TGGTCAGATCGTATTGCTAAGTATGCTTTTGAATATGCTCACTTCAGCAAAAGGAAGAAA 450
||||| |||||||| || ||||||||||||||||||||| | || ||||| |||||||||
Sbjct 417 TGGTCTGATCGTATAGCAAAGTATGCTTTTGAATATGCTAAATTAAGCAAGAGGAAGAAA 476
Query 451 GTTACAGCAGTTCACAACAATGGAAAATACGAAAAACTAGCTGATGCGTTTTTCTTGGAG 510
|||||||||||||||||||| |||||| |||||||||| |||||| | || ||||||||
Sbjct 477 GTTACAGCAGTTCACAACAAGGGAAAACACGAAAAACTGGCTGATTCATTCTTCTTGGAA 536
Query 511 TCTTGTCAAGAAGTTGCTAAAATGTATCCAAACATCACCTACAACGAAATCGGTATTAAT 570
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 537 TCTTGTCAAGAAGTTGCTAAAATGTATCCAAGTATCACCTACAACGAAATCGGTATTGAT 596
Query 571 AACTGCTGTTTGCAGCTAGTAGAGAAACCAGAGCGATTCGACGTCATAGTAACTCCAAAT 630
|| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 597 AAATGCTGTTTGCAACTTGTAGAGAAACCAGAGCGATTCGACGTCATTGTAACTCCAAAT 656
Query 631 CTCTATGGG--CTATAATTGCAAACATTGCT-TCTGGTGTTGCTGGAGGA 677
||||||||| | |||||||||||||||||| | |||| |||||||||||
Sbjct 657 CTCTATGGGAAC-ATAATTGCAAACATTGCTGT-TGGTATTGCTGGAGGA 704
Score = 348 bits (188), Expect = 5e-95
Identities = 222/239 (93%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 670 CTGGAGGAAGTTTTGGTGATGACTATGCAATCTTTGAGCAAGTTGGATCAGTAGGAAACC 729
||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||
Sbjct 727 CTGGAGGAAGTTTTGGTTCTGAGTATGCAATCTTTGATCAAGTTGGATCAGTAGAAAACC 786
Query 730 ATAAAAATCCTGTGGCGTTACTGTTCTCTTCGGTTATGATGCTGAGACATCTTCTGCTTC 789
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 787 ATAAAAATCCTGTGGCATTACTGTTCTCTTCGGTTATGATGCTGAGACATCTCCTGCTTC 846
Query 790 CTTTATTTGCCGACCGGCTTAAAACCGCCGTGACACGTGTTATCTCTGAAGGAAAGTGTG 849
|||||||||| || |||||| |||||||| ||| ||||||| ||||||||||||||||||
Sbjct 847 CTTTATTTGCAGATCGGCTTGAAACCGCCATGAAACGTGTTGTCTCTGAAGGAAAGTGTG 906
Query 850 GGAACAGTAATACAACTACACAAGAGGTTGTTGATTCTGTAATTGCAAACTTGGATTGA 908
| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 907 GAAACAGTAATACTACTACACAGGAGGTTGTTGATGCTGTAATTGCAAACTTGGATTGA 965
Score = 209 bits (113), Expect = 2e-53
Identities = 155/175 (89%), Gaps = 3/175 (2%)
Strand=Plus/Plus
Query 3 GCCTAGGCCTGTTACGGTTATCGACAGCAATGTGACAAACGCGGTGCACCAGGTGATGGA 62
||| || || || ||||||||| || | | |||||||||||||| | |||||||||||
Sbjct 183 GCC-AGACCCGTGACGGTTATCCACGGTGTTTTGACAAACGCGGTGGAGCAGGTGATGGA 241
Query 63 TGCAATGCAAGCGCCGGTCTACTTCGAGACATACAT-CATAAAGGGGAAAAATATGAATC 121
||||||||| |||||||||||||| ||||||||| | || ||||||||||||||||||||
Sbjct 242 TGCAATGCATGCGCCGGTCTACTTTGAGACATAC-TACACAAAGGGGAAAAATATGAATC 300
Query 122 ATTTGACGTGGGAAGTGGTGGACTCGATACGGAAGAACAAAGTGTGCTTGAATGG 176
||||| || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTTGCCGCGGGAAGTAGTGGACTCGATACGGAAGAACAAAGTGTGCTTGAATGG 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5