BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32510.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313821 jgi|Araly1|313821|fgenesh1_pm.C_scaffold_1002601 1175 0.0
> Ahg313821 jgi|Araly1|313821|fgenesh1_pm.C_scaffold_1002601
Length=846
Score = 1175 bits (636), Expect = 0.0
Identities = 787/858 (92%), Gaps = 18/858 (2%)
Strand=Plus/Plus
Query 1 ATGGTAGGATCATTTTTACCACCTGGTTTCAGATTTTATCCAACAGATGAAGAACTTGTA 60
||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGTGGGATCCTATTTACCACCTGGTTTCAGATTTCATCCAACAGATGAAGAACTTGTT 60
Query 61 GGTTATTACCTGCACAGAAGAAACGAAGGGCTTGAGATCGAGCTCGAAATAATCCCATTA 120
||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||
Sbjct 61 GGTTATTACCTGCACAGAAGAAACGAAGGTCTTCAGATCGAGCTCGAAATCATTCCATTA 120
Query 121 ATGGACTTATACAAGTTTGATCCTTGGGAACTTCCAGAGAAATCCTTCTTGCCAAATCGA 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 ATGGATTTATACAAGTTTGATCCTTGGGAACTTCCAGAGAAATCCTTCTTGCCGGATCGA 180
Query 181 GATATGGAATGGTTTTTCTTCTGTCATCGCGACAGAAAATACCAGAACGGATCTCGAATA 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 GATATGGAATGGTTTTTCTTCTGTCATCGTGACAGAAAATACCAGAACGGATCTCGGATA 240
Query 241 AACAGAGCAACTAAATCTGGTTATTGGAAAGCCACTGGCAAAGATCGAAAAATCGTTTGC 300
|| ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 241 AATAGAGCAACTAAATCTGGATACTGGAAAGCCACGGGCAAAGATCGAAAAATCGTCTGT 300
Query 301 CACTCTTCTTCTTCTTCATCATCTTCCTCTATCACCGGCTGCCGAAAAACCCTAGTTTTT 360
|| | ||||||||||| | ||||||||| ||||||| |||||||||||||||||||||
Sbjct 301 CA--C-TCTTCTTCTTC-T--TCTTCCTCTGTCACCGGGTGCCGAAAAACCCTAGTTTTT 354
Query 361 TATATGGGTCGAGCTCCTTTTGGTGGTAGAACCGAGTGGGTAATGCATGAGTATCGCCTC 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TATATGGGTCGAGCCCCTTTTGGTGGTAGAACCGAGTGGGTAATGCATGAGTATCGCCTC 414
Query 421 TTCGACAACGATACTTCACAAGGATCACTAAACTTCAAGGGAGACTTCGCGCTGTGTCGT 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 415 TTCGACAACGATACTTCACAAGGATCACTAAACTTTAAGGGAGACTTCGCGCTGTGTCGT 474
Query 481 GTGATAAAGAGGAATGAGCATACGCTTAAGAAATGTGAAATTATCTCACCAGAGGTTTCA 540
||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct 475 GTGATAAAGAGGAATGAGCATACGCGTAAGAAATCTGAAACCAACTCACCAGAGGTTTCA 534
Query 541 GATGAG-TCATTAAGCAATAATGTTAACA-ATTTTTGTCAAGCAAGTGACCTAGAAAAGG 598
|||||| | ||| ||||| |||||||| | ||||| ||||||||||||||||||||||||
Sbjct 535 GATGAGCT-ATTGAGCAACAATGTTAAGATATTTT-GTCAAGCAAGTGACCTAGAAAAGG 592
Query 599 GTTCTTGTGATGCAAGTAACACACGTTTG-TCTTCTCCTGATTTCATCCTTGAATCATCT 657
|||||||||||||||||||||||| | || ||||| |||||||||||||||||||||| |
Sbjct 593 GTTCTTGTGATGCAAGTAACACAC-TCTGGTCTTCACCTGATTTCATCCTTGAATCATTT 651
Query 658 TTTCAGGGAAATTCACATTCAAAAACAGAAGAAGATTCCGGTTTC-CAAGTATTTACA-T 715
||||||||||| ||||| ||| |||||||||||||||| |||| | ||||||||| || |
Sbjct 652 TTTCAGGGAAACTCACAATCACAAACAGAAGAAGATTCTGGTT-CACAAGTATTTCCACT 710
Query 716 TACCCGAATTCGAATATCCGCTAGAGGTTTTTGCAGATTTGAATTTCGATTTGGAAATGG 775
| || ||| ||||| |||||| ||||||||| ||||||||||||||||| | ||||||||
Sbjct 711 T-CCTGAACTCGAAAATCCGCCAGAGGTTTTCGCAGATTTGAATTTCGACTGGGAAATGG 769
Query 776 AGGATCCATTCATGTTCGATTATCATCCAGA-GCCTCATATGAACAATGAAGTCATGAGC 834
| ||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 770 ATAATCCATTCATGTTTGATTATCATCCAGAAGC-TCATATGAACAATGAAGTCATGAGC 828
Query 835 CATCACATTCGTGGGTAA 852
||||||||| ||| |||
Sbjct 829 TATCACATTCTTGGCTAA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5