BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32530.1
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913068 jgi|Araly1|913068|Al_scaffold_0001_3322 2885 0.0
> Ahg913068 jgi|Araly1|913068|Al_scaffold_0001_3322
Length=2625
Score = 2885 bits (1562), Expect = 0.0
Identities = 1948/2127 (92%), Gaps = 56/2127 (3%)
Strand=Plus/Plus
Query 82 ATGGGTTGTACTGTGAGGGAGAAGCACGTGAAACCGACCCGTAGGAT-CAAAGCCGCTGC 140
|||||||||||||||||||||||||| || ||||||| ||| ||||| | || |||||||
Sbjct 1 ATGGGTTGTACTGTGAGGGAGAAGCATGTAAAACCGAACCGGAGGATCCGAA-CCGCTGC 59
Query 141 ATTTAGATCCGACCCACCGTTATGTTGGGTCGAGAAGATTGCTATGTCACAATCAATTGT 200
||||||||||||||||||||||||| |||||||||||||| | || |||||||||||
Sbjct 60 TTTTAGATCCGACCCACCGTTATGTTTCATCGAGAAGATTGCTCTATCGCAATCAATTGT 119
Query 201 TGAG--AA----C-----CTT-GTTTATCATCCTGGTCTTACTGATTCCGGTTCTGTCAA 248
|||| || | ||| ||||||||||| ||| |||||||||| |||||||||||
Sbjct 120 TGAGTCAAGTCTCAAAAACTTGGTTTATCATCCAGGTGTTACTGATTCTGGTTCTGTCAA 179
Query 249 TTTGAATTCCGTTACTGAGAATCCT-GAGGAGAATTTTTGGGCATATTGTACAGAGGAGC 307
|| |||||| | || ||||||| | ||||||||| |||||| ||||||||||||||||
Sbjct 180 TTCGAATTCTGGTAATGAGAAT-TTGGAGGAGAATCTTTGGGGTTATTGTACAGAGGAGC 238
Query 308 ATTTGGAAGAGATTTTGCTGAAACATTTGGAGTTTTTGTATAATCAAGCTGTTTCTAAGC 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 ATTTGGAAGAGATTTTGCTGAAACATTTGGAGTTTTTGTATAATCAAGCTGTTTCGAAGC 298
Query 368 TTCTTGAATTGGGCTATGAGGAACGTGTTGCG-TTGAAAGCGGTTTTGAGTAATGGACAC 426
|||| |||||||| |||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 299 TTCTCGAATTGGGTTATGAGGAACGTGTCGCGATT-AAAGCGGTTTTGAGTAATGGACAC 357
Query 427 TGTTATGGTGAATTGGATGTGTTGACTAATATAGTGAATAATTCATTATCTTATTTGAAT 486
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 358 TGTTATGGTGAATTGGATGTTTTGACAAATATAGTGAATAATTCATTATCTTATTTGAAT 417
Query 487 ---AGT---GGTGGAGGTGGA------GGTGGGAGTAAT---GGGAACGGTGAGGATCGA 531
||| |||||||||||| ||||| |||||| |||||||||||||||| |
Sbjct 418 AGCAGTAGCGGTGGAGGTGGATGTGGCGGTGGTAGTAATAACGGGAACGGTGAGGATC-A 476
Query 532 -ACGGAGACTGGTTTTACGGATTTGAGAGATTTGGAGGAGTATTCGCTTGCGGGTATGAT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTCGGAGACTGGTTTTACGGATTTGAGAGATTTGGAGGAGTATTCGCTTGCGGGTATGAT 536
Query 591 TTACTTGTTGCAACAAGTTAAGCCTAATTTGAGTAAAGGTGATGCAATGTGGTGTTTGTT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTACTTGTTGCAACAAGTTAAGCCTAATTTGAGTAAAGGTGATGCAATGTGGTGTTTGTT 596
Query 651 AATGAGTGAGCTCCATGTTGGTAGGGCAAGTACTCTGGATGTCCCAACGAATAGGTCTAG 710
|||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 597 AATGAGTGAGCTACATGTTGGTAGGGCAAGTACTATGGATGTCCCTACGAATAGGTCTA- 655
Query 711 TTGTTGTACTAAGGAAGATAGCAATGTAGAAGATGTTGGTACGGGTGGTACTCTAGATAT 770
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 656 --GTTGTACTAAGGAAGATAGCAATGTAGAAGATGTTGGTA---GTGGTACACTAGATAT 710
Query 771 TGCTGGTTTTATGGCACCAGCGTTGTGTCGATTCCATGGAGGTTGGGGTTTTGGGAATGG 830
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 711 TGCTGGTTTTATGGCACCAGCATTGTGTCGATTCCATGGAGGTTGGGATTTTGGGAATGG 770
Query 831 GGGAGGACCTGAGTTTTCTGGTAATGGGTTTTCTATGAAAGGTGCTGAGTTGAAGTTGCA 890
|| ||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||
Sbjct 771 GGTAGGACCTGAGTTTTCTGGTAACGGGTTTTCTATGAACGGTGCTGAGTTAAAACTGCA 830
Query 891 GAGAGAGATTGATTGTCCTAAAAGGTTTAATCTTTCGCCATCCATGAAGTCCTTGTTGAA 950
|||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||
Sbjct 831 GAGAGAGATTGATTGTCCGAAGAGATTTAATCTTTCGCCATCCATGAAATCCTTGTTGAA 890
Query 951 GCGGAATGTTGCAGCGTTTGCTGCTGGGTATCGTGCTAGTATGAAGCAGAAGCAAATACA 1010
|| |||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 891 TCGAAATGTTGCAGCGGTTGCTGCTGGGTATCGTGCTAGTATGAAGCAGAAG-----A-A 944
Query 1011 GTCGTCTGATACTATTGGTGATAGCAAAGCTTGTAATGATCCTGCAATTGTGAAGAG-TT 1069
|||||| |||| |||||||||| | ||||||||||||||||| |||| || | ||
Sbjct 945 ---GTCTGAAACTAGTGGTGATAGCTTATCTTGTAATGATCCTGCACGTGTGGAG-GCTT 1000
Query 1070 GTGGGCAGCAACCACGTAAGTCAGGGAGTGAAGAAAGTGTTAGTACGGTGTTGGAGAAAT 1129
||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1001 GTGAGCAGCAGCCACGTAAGTCAGGGAGTGAAGAAAGTGTTAGTTCGGTGTTGGAGAAAT 1060
Query 1130 TTCGTGATCTGAACCTTGATGATAATCTGGAATCGGTGGGTGTGGATGATAAGGATTGTG 1189
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1061 TTCGTGATCTGAACCTTGATGATAATTTGGAATCGGTGGGTGAGGATGATAAGGATTGTG 1120
Query 1190 TGATAGTCGATCTGCTTCATCAGGTTAAGGATTTCGAGAAGAAAGTAAAGGAAAGGAAAG 1249
|||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1121 TGATCGTCAATCTGCTTCATCAGGTTAAGGATCTCGAGAAGAAACTAAAGGAAAGGAAAG 1180
Query 1250 AGTGGGCTCAGAAGAACGCAATGCAAGCCGCACAAAAGGTCAGCGAGGAATTAGCTGAGC 1309
| |||||||||||||| ||||||||||| || |||||||||||||||||||| || ||||
Sbjct 1181 ACTGGGCTCAGAAGAAGGCAATGCAAGCTGCTCAAAAGGTCAGCGAGGAATTGGCCGAGC 1240
Query 1310 TTAAAACATTGAGTAGTGAAAGAGAAGGAATCCAACTGCTGAAAAAGGGGAAACAGGCTG 1369
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1241 TTAAATCATTGAGTAGTGAAAGAGAAGGAATCCAACTGCTGAAAAAGGGGAAACAAGCTG 1300
Query 1370 TTGAAGAATCAACTGCGAAAAGATTTA-CTGACAAGGAAATTGAACTCAGAAAAGCTTGC 1428
||||||||||||||| ||||||| ||| ||||||| |||| |||||| ||||||||| |
Sbjct 1301 TTGAAGAATCAACTGTGAAAAGA-TTATCTGACAAAGAAAATGAACTTAGAAAAGCTAGT 1359
Query 1429 AGTCAAAATGACAGGGCCAATGTAATTGTAAGAAAGCTTGAGAATCAAAATGCAGAGATT 1488
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1360 GGTCAAAACGACAGGGCCAATGCGATTGTAAGAAAGCTTGAGAATCAAAATGCAGAAATT 1419
Query 1489 CGAGCAGAGCGGGAGGGATCCAAATTAAGTGCATCAGAATCGCTTAAAGCGTGCATGGAA 1548
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 CGAGCAGAGCGAGAGGGATCCAAATTAAGTGCATCAGAATCGCTTAAAGCGTGCATGGAA 1479
Query 1549 GCATCAAAGAAGGAG-AAAAAATGCTTGAAGAAGCTTGTGGCATGGGAGAAACAGATATT 1607
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1480 GCATCAAAGAAGGAGAAAAAAAT-CTTGAAGAAGCTTGTGGCATGGGAGAAACAGAAATT 1538
Query 1608 GAAGTTGCAGGATGAGATTACAGCTGAAAAAGAAAAGATTAAGGCCCTATATAAGACTTT 1667
||||||||||||||| || ||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 1539 GAAGTTGCAGGATGATATCACAGCTGAAAAAGAAAATATTAAGGCCCTTTATAGGACTTT 1598
Query 1668 AGCTCAAATCACAGAGTATGAAAAGGAGATTGAGGCGAAATGGAGGCAAGAGCAGAAGGC 1727
|||||| |||||| || |||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1599 AGCTCAGATCACACAGGATGAAAAGGAAATTGAGGCGAAATGGAGACAAGAGCAGAAAGC 1658
Query 1728 AAAAGAGGAGGCTCTGGCTCAAATGGAGGAAGAACAACGCTCAAAAGAAGCAGCTGAGGG 1787
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 AAAGGAGGACGCTCTGGCTCAAATGGAGGAAGAACAACGCTCAAAAGAAGCAGCTGAGGG 1718
Query 1788 TCACAACAAGAGAAAGCTTGAGACTTTACGACTCAAAATTGAACTAGACTTCCAAAGACA 1847
||| |||||||||||||| |||||| |||| | ||||| ||||||||||||||||||||
Sbjct 1719 TCATAACAAGAGAAAGCTGGAGACTCTACGGTTAAAAATCGAACTAGACTTCCAAAGACA 1778
Query 1848 CAAAGACGATCACCAAAGACTGGAGCAAGAACTCGGTCGACTCAAAGCCTCTTCAGATAG 1907
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1779 CAAAGACGATCACCAAAGACTAGAGCAAGAACTCTCTCGACTCAAAGCCTCTTCAGATAC 1838
Query 1908 TGACTCAAGCCACATATCCAACAACGCTTGGAAACCCAAAAAATCTCAAGGAGAAAACAT 1967
||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1839 CGACCCAAGCCACTTATCCAACAACGCTTGGAAACCCGAGAAATCTCAAGGAGAAAACAT 1898
Query 1968 TGCTAAGCTGCTTGAAGAAATTGATAAGCTTGAAGGGTCTTATGACAATGAAGCAAACTA 2027
|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1899 TGCTAAACTGCTTGAAGAACTTGATAAGCTTGAAGGGTCATATGACAATGAAGCAAACTA 1958
Query 2028 TGATCGAGAATGCATAATCTGTATGAAAGATGAAGTCTCTGTGGTGTTTCTTCCTTGTGC 2087
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1959 CGATCGAGAATGCATAATCTGTATGAAAGATGAAGTCTCAGTGGTGTTTCTTCCTTGTGC 2018
Query 2088 GCATCAAGTTGTGTGTGGTAGTTGCAGTGATAGCTTCTTCGCGAGCAACAACGGCGGAAG 2147
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2019 GCATCAAGTTGTGTGTGGTAGTTGCAGTGATAGCTTCTTCGCGAGCAACAATGGCGGAAG 2078
Query 2148 CAAAGTCACTTGTCCTTGTTGCCGAGG 2174
|||||||||||||||||||||||||||
Sbjct 2079 CAAAGTCACTTGTCCTTGTTGCCGAGG 2105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91340407510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5