BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32540.1
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473445 jgi|Araly1|473445|fgenesh2_kg.1__3399__AT1G32540.3 905 0.0
> Ahg473445 jgi|Araly1|473445|fgenesh2_kg.1__3399__AT1G32540.3
Length=959
Score = 905 bits (490), Expect = 0.0
Identities = 640/704 (91%), Gaps = 44/704 (6%)
Strand=Plus/Plus
Query 927 GGAAGTACAAGTGGGCAGAGCCAGTTAGTGTGTTCAGGTTGCAGAAACCTTCTGATGTAT 986
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GGAAGTACAAGTGGGCAGAGCCAGTTAGTGTGTTCAGGTTGCAGAAACCTTCTGATGTAC 322
Query 987 CCCGTCGGAGCAACCTCCGTCTGTTGCGCCGTCTGTAACGCCGTCACGGCCGTTCCTCCG 1046
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 323 CCCGTCGGGGCAACGTCCGTCTGTTGCGCCGTCTGTAACGCCGTCACCGCCGTTCCTCCG 382
Query 1047 CCCGGAACGGAGATGGCACAGTTGGTATGTGGAGGATGTCATACACTCTTAATGTACATT 1106
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 383 CCTGGAACGGAGATGGCACAGTTGGTATGTGGAGGATGTCATACACTTTTAATGTACATT 442
Query 1107 CGTGGAGCTACAAGTGTTCAATGTTCTTGTTGTCACACTGTTAATCTCGCCCTCGAAGCA 1166
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 443 CGTGGAGCTACAAGTGTTCAATGTTCTTGTTGTCACACTGTTAATCTTGCCCTCGAAGCG 502
Query 1167 AACCAAGTAGCGCATGTGAATTGCGGAAACTGCATGATGCTACTAATGTATCAATATGGA 1226
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 503 AACCAGGTAGCGCATGTGAATTGCGGAAACTGCAAGATGCTACTAATGTATCAATATGGA 562
Query 1227 GCAAGATCAGTGAAATGTGCCGTTTGTAACTTTGTCAC-ATCTGTTGGGGGTTCAACGAG 1285
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 563 GCAAGATCAGTGAAATGTGCCGTTTGTAACTTTATCACCA-CTGTTGGGGGTTCAACGAG 621
Query 1286 CACGACTGATTCGAAGTTTAACAATTAAAAC--TTGGATCTATCTACCTATCAATACATA 1343
||||||||||| ||||||||||||||||||| ||| | |||||||||||||| ||
Sbjct 622 CACGACTGATTTGAAGTTTAACAATTAAAACAATTG---CG-TCTACCTATCAATA--TA 675
Query 1344 TTGAGTTATGAGCAATATAGAGGAAGCATCAAATCTTTTT---------CACTCTCTCT- 1393
|||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 676 TTGAGTTATGAGCAATATAGAGGAAGCATCAAATCTTTTTTTTTTTTTTCTCTCTCTCTC 735
Query 1394 TC-----GATCAAGAATCCGGCAGTGA--TG--A-G--TTTGAAACCATTTTCGGAAGTA 1441
|| |||||||||||||||||||| || | | ||||||||||| ||||||||||
Sbjct 736 TCTCTTCGATCAAGAATCCGGCAGTGAGATGTCATGAGTTTGAAACCATCTTCGGAAGTA 795
Query 1442 AATGAAATATGTAATTCGTCGAAATTTCTGACTTTGGTCTCTTTGTCCGTTTGTATAGAG 1501
||| |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 796 AATTAAATATGTAATTTGTCAAAATCTCTGACTTTGGTCTCTTTGTCCGTTTGTATAGAG 855
Query 1502 CTATCTCTCTTCTTTGGTTTTTGTTTTGTT--------CTCTTAAGAAAAATTTGATTCA 1553
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 856 CTATCTCTCTTCTTTGGTTTTTGTTTTGTTGTTATTTTCTCTTGAGAAAAATTTGATTCA 915
Query 1554 CCAGTTTGTAA----GAGTGATTCAGAAATCAAAGCTAGACTTT 1593
||||||||||| |||||||||||||||||||||||||||||
Sbjct 916 CCAGTTTGTAATTAAGAGTGATTCAGAAATCAAAGCTAGACTTT 959
Score = 250 bits (135), Expect = 2e-65
Identities = 217/253 (86%), Gaps = 20/253 (8%)
Strand=Plus/Plus
Query 372 ATTGATGAAAGTGAGGAAATGGGAGAAGAAATGAAGAACACAGGATGTGTCTTCTTCTTC 431
||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 27 ATTGATGTAAGTGAGGAATTGGGAGAAGAAGTGAAGAACACAAGATGTGTCTTCTTCTTC 86
Query 432 TAAGTCACTAACAAA-ATCAACAAAGAGGAG-AAGCCATTATTATATAATAGAGAGATT- 488
|| |||||||| ||| ||||||||||| ||| ||| || | || | |||
Sbjct 87 TAGGTCACTAA-AAACATCAACAAAGA-GAGAAAG-CA--A-GCCAT--T------ATTA 132
Query 489 GAGAGAAGAGATTTATCCaaaaa-aaTATTGCAATTCTTCTTGGAGTGAATAATGCCAGT 547
||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||||
Sbjct 133 GAGAGAAGAGATTTATCCAAAAAGTTTTTTGCAATTATTCTTGGAGTTAATAATGCCAGT 192
Query 548 CCCTCTTGCACCATATCCAACACCTCCGGCACCGGCACTGGCTCCGTCGTACAACAC-TC 606
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 193 CCCTCTTGCACCATATCCAACACCTCCGGCACCGGCACTGGCCCCGTCGTACA-CTCCTC 251
Query 607 CTCCGGCAAATGG 619
||||||| |||||
Sbjct 252 CTCCGGCTAATGG 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5