BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G32560.1

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913071 jgi|Araly1|913071|Al_scaffold_0001_3325                    455    2e-127


> Ahg913071 jgi|Araly1|913071|Al_scaffold_0001_3325
Length=426

 Score =  455 bits (246),  Expect = 2e-127
 Identities = 315/348 (91%), Gaps = 5/348 (1%)
 Strand=Plus/Plus

Query  45   ATGCAATCGGCGAAACAGAAGATAAGCGATATGGCTAGTACAGCCAAGGAGAAGATGGTG  104
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  1    ATGCAATCGGCGAAACAGAAGATAAGCGATATGGCTAGTACAGCCAAGGAGAAGATAGTT  60

Query  105  ATATGTCAAGCAAAAGCTGATGAGAAGGCAGAGCGGGCGATGGCGAGGACGAAAGAGGAG  164
            || |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct  61   ATGTGTCAAGCAAAAGCTGATGAGAAGGCCGAGCAGGCGATGGCGAGGACGAAAGAGGAG  120

Query  165  AAAGAGATAGCGCACCAACGGAGAAAGGCGAAGGAAGCAGAAGCGAATATGGATATGCAC  224
            ||||||||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||
Sbjct  121  AAAGAGATAGCGCACCAGCGAAGAAAGGCGAAGGAAGCAGAGGCGAAGATGGACATGCAC  180

Query  225  ATGGCTAAAGCGGCTCATGCGGAAGACAAGCTTATGGCTAAGCAATCTCACTACCATGTT  284
             ||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||| |||
Sbjct  181  TTGGCTAAAGCGGCTCATGCTGAAGACAAGCTAATGACTAAGCAATCTCATTACCACGTT  240

Query  285  ACTGATCATGGTCCCCACGTGCCTCAACAAGCG-CCTGTACCGGCTCCCGCACCGGTTAT  343
               | ||||||||| || ||||||||||| | | ||| |||||||||| || ||||| ||
Sbjct  241  G--G-TCATGGTCCACATGTGCCTCAACACG-GTCCTATACCGGCTCCAGCGCCGGTCAT  296

Query  344  GGGACACGGTTACGGGCATAATCCTACCGGAGTTACCTCAGTGCCTCC  391
            ||| || |||||||||||||||||||| ||||||||||| ||||||||
Sbjct  297  GGGGCATGGTTACGGGCATAATCCTACTGGAGTTACCTCGGTGCCTCC  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25580477307


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5