BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32560.1 Length=696 Score E Sequences producing significant alignments: (Bits) Value Ahg913071 jgi|Araly1|913071|Al_scaffold_0001_3325 455 2e-127 > Ahg913071 jgi|Araly1|913071|Al_scaffold_0001_3325 Length=426 Score = 455 bits (246), Expect = 2e-127 Identities = 315/348 (91%), Gaps = 5/348 (1%) Strand=Plus/Plus Query 45 ATGCAATCGGCGAAACAGAAGATAAGCGATATGGCTAGTACAGCCAAGGAGAAGATGGTG 104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 ATGCAATCGGCGAAACAGAAGATAAGCGATATGGCTAGTACAGCCAAGGAGAAGATAGTT 60 Query 105 ATATGTCAAGCAAAAGCTGATGAGAAGGCAGAGCGGGCGATGGCGAGGACGAAAGAGGAG 164 || |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 61 ATGTGTCAAGCAAAAGCTGATGAGAAGGCCGAGCAGGCGATGGCGAGGACGAAAGAGGAG 120 Query 165 AAAGAGATAGCGCACCAACGGAGAAAGGCGAAGGAAGCAGAAGCGAATATGGATATGCAC 224 ||||||||||||||||| || |||||||||||||||||||| ||||| ||||| |||||| Sbjct 121 AAAGAGATAGCGCACCAGCGAAGAAAGGCGAAGGAAGCAGAGGCGAAGATGGACATGCAC 180 Query 225 ATGGCTAAAGCGGCTCATGCGGAAGACAAGCTTATGGCTAAGCAATCTCACTACCATGTT 284 ||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||| ||| Sbjct 181 TTGGCTAAAGCGGCTCATGCTGAAGACAAGCTAATGACTAAGCAATCTCATTACCACGTT 240 Query 285 ACTGATCATGGTCCCCACGTGCCTCAACAAGCG-CCTGTACCGGCTCCCGCACCGGTTAT 343 | ||||||||| || ||||||||||| | | ||| |||||||||| || ||||| || Sbjct 241 G--G-TCATGGTCCACATGTGCCTCAACACG-GTCCTATACCGGCTCCAGCGCCGGTCAT 296 Query 344 GGGACACGGTTACGGGCATAATCCTACCGGAGTTACCTCAGTGCCTCC 391 ||| || |||||||||||||||||||| ||||||||||| |||||||| Sbjct 297 GGGGCATGGTTACGGGCATAATCCTACTGGAGTTACCTCGGTGCCTCC 344 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25580477307 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5