BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32580.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473448 jgi|Araly1|473448|fgenesh2_kg.1__3402__AT1G32580.1 1162 0.0
Ahg952606 jgi|Araly1|952606|scaffold_94100001.1 590 8e-168
Ahg934136 jgi|Araly1|934136|scaffold_402124.1 590 8e-168
> Ahg473448 jgi|Araly1|473448|fgenesh2_kg.1__3402__AT1G32580.1
Length=809
Score = 1162 bits (629), Expect = 0.0
Identities = 714/755 (95%), Gaps = 5/755 (1%)
Strand=Plus/Plus
Query 1 ACTTAAACCCTAGTCTAG-TCATTTCTCAGACTCTG--ACCTCACTGATCTCCAATGGCG 57
|||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||
Sbjct 1 ACTTAAACCCTAGTCTAGTTCATTTCTCAGACTCTGACACCTCACTGAGCTTCAATGGCG 60
Query 58 AAAACCCTAGCTCGCTCCACAGCGTCACGCATCACCAAGCGCTTAATCTCCACCTCCGGA 117
|||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 61 AAAACCCTAGCTCGCTCCACCGCGTCACGCATCACCAAACGCTTCTTCTCCACCTCCGGA 120
Query 118 GCCACCACTCCTTCCCCTTCTTATATCCTCTCCCGTCGATCAACCCCGGTGTTCTCCCAT 177
||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||
Sbjct 121 GCCACCACTCCTTCCCCTTCTTACCTCCTCTCCCGTCGATCAACCCCAGCGATCTCCCAT 180
Query 178 GCCGTCGGATTCATCTCTTCCTTGAATCGTTTCACAACGATTCGAACTCGAATGGATAGG 237
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GCCGTCGGATTCGTCTCTTCCTTGAATCGTCTCACAACGATTCGAACTCGAATGGATAGG 240
Query 238 TCCGGTGGATCGTACTCTCCTCTAAAATCCGGTTCGAATTTCAGCGACCGAGCACCCACT 297
|||||||| || ||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 241 TCCGGTGGGTCATACTCTCCTCTCAAATCCGGTTCGAATTTCAGCGACCGACCACCTACA 300
Query 298 GAGATGGCGCCGTTGTTTCCTGGCTGCGATTATGAGCATTGG-TTGATTGTAATGGACAA 356
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 301 GAGATGGCGCCGTTGTTTCCTGGCTGCGATTATGAGCATTGGCTT-ATTGTAATGGACAA 359
Query 357 ACCTGGAGGCGAAAACGCTACTAAGCAGCAAATGATTGATTGTTATGTTCAAACCCTAGC 416
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 360 ACCTGGAGGGGAAAACGCTACAAAGCAACAAATGATTGATTGTTATGTTCAAACCCTAGC 419
Query 417 TAAAATTATCGGCAGTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAG 476
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAAAATCCTCGGCAGTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAG 479
Query 477 GTATTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGGACTTCC 536
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 480 GTATTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAATAAATTTGAAGGACTTCC 539
Query 537 TGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGC 596
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGTGTTCTTTTCGTTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGC 599
Query 597 TGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCCAGAGAGACAGAGAAAGATCAT 656
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 600 TGAGCTTTTTGTGAATGGAGAAATAGTCCAACGACCTCCAGAGAGACAGAGAAAGATCAT 659
Query 657 TGAGTTAACGACCCAGAGAACCAATGATAAACCAAAGTACCACGACAAGACCAGATATGT 716
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 660 CGAGTTAACGACCCAGAGAAGCAATGATAAACCAAAGTACCACGACAGGACCAGATATGT 719
Query 717 CCGAAGAAGAGAGAACATGCGTTGAATCCAAATCT 751
|||||| ||||||||||||||||||||| ||||||
Sbjct 720 CCGAAGGAGAGAGAACATGCGTTGAATCAAAATCT 754
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 831 TCTCCTTATGTAATGGCTTTGTAGTTTGG 859
|||||||||||||||||||||||||||||
Sbjct 781 TCTCCTTATGTAATGGCTTTGTAGTTTGG 809
> Ahg952606 jgi|Araly1|952606|scaffold_94100001.1
Length=746
Score = 590 bits (319), Expect = 8e-168
Identities = 585/712 (82%), Gaps = 24/712 (3%)
Strand=Plus/Plus
Query 46 TCTCCAATGGCGAAAACCCTAGCTCGCTCCACAGCGTCACGCATCACCAAGCGCTTAATC 105
||| ||||||||||||| ||| | || ||||| || ||||||||| | || || ||| ||
Sbjct 22 TCT-CAATGGCGAAAACTCTATCCCGATCCACCGCCTCACGCATCGCTAATCGTTTATTC 80
Query 106 TCCACCTCC---GGAGCCACCACTCCTTC-CC-CTT-CTTAT-ATC-C-TCTCCCGTCGA 156
||||||||| | ||| || ||||||| || ||| ||| | ||| | |||| ||||||
Sbjct 81 TCCACCTCCAAAGCCGCCGCCTCTCCTTCTCCGCTTCCTTCTCATCTCATCTCTCGTCGA 140
Query 157 TCAACCCCGGTGTTCTCCCATGCCGTCGGATTCATCTCTTCCTTGAATCGTTTCACAACG 216
|| | ||| | ||| ||| |||||||||| |||| | | |||| |||||||| |||
Sbjct 141 TCCTCACCGACGATCTTCCACGCCGTCGGATACATCCCAGCTTTGACCCGTTTCACGACG 200
Query 217 ATTCGAACTCGAATGGATAGGTCCGGTGGATCGTACTCTCCTCTAAAATCCGGTTCGAAT 276
|| || || |||||||||||||||||||| || || || || || ||||| || |||||
Sbjct 201 ATCCGGACCCGAATGGATAGGTCCGGTGGCTCATATTCGCCGCTTAAATCTGGATCGAAC 260
Query 277 TTCAGCGACCGAGCACCCACTGAGATGGCGCCGTTGTTTCCTGGCTGCGATTATGAGCAT 336
|||||||| ||| |||||||||| ||||||||| | |||||||| |||||||| ||||||
Sbjct 261 TTCAGCGATCGACCACCCACTGAAATGGCGCCGCTATTTCCTGGTTGCGATTACGAGCAT 320
Query 337 TGG-TTGATTGTAATGGACAAACCTGGAGGCGAAAA--CGCTACTAAGCAGCAAATGATT 393
||| || || || ||||| || || || |||||||| ||| | || ||||||||||||
Sbjct 321 TGGCTT-ATCGTCATGGAGAAGCCCGGCGGCGAAAATGCGC-A-GAAACAGCAAATGATT 377
Query 394 GATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGTGAGGAAGAAGCTAAGAAGAAG 453
||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 378 GATTGCTATGTTCAAACCCTAGCTAAAATTGTTGGCAGTGAGGAAGAAGCTAAAAAGAAG 437
Query 454 ATTTATAATGTATCGTGTGAAAGGTATTTTGGATTTGGTTGTGAGATTGATGAAGAGACA 513
|| || ||||| || || || ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 438 ATCTACAATGTTTCATGCGAGAGGTATTTTGGGTTTGGCTGTGAGATTGATGAGGAGACA 497
Query 514 TCAAACAAACTTGAAGGACTTCCTGGTGTTCTCTTCATT-TTACCAGACTCTTATGTTGA 572
|||||||||||||||||||||||||||||||| ||| | || || ||||||||||||||
Sbjct 498 TCAAACAAACTTGAAGGACTTCCTGGTGTTCTATTCGTGCTT-CCGGACTCTTATGTTGA 556
Query 573 TCAAGAGAACAAAGATTACGGAGCTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCC 632
|| |||| |||||||||||||||||||||||||| ||| |||||| |||||| || ||
Sbjct 557 TCCAGAGTTCAAAGATTACGGAGCTGAGCTGTTTGAGAACGGAGAAGTAGTTCCTCGGCC 616
Query 633 TCCAGAGAGACAGAGAAAGATCATTGAGTTAACGACCCAGAGAACCAAT-G-ATAAACCA 690
|| ||||||||||| | ||| | ||||||||||| || ||| | | | |||||||
Sbjct 617 ACCGGAGAGACAGAGGAGGATGGTGGAGTTAACGACTCAAAGAGG-A-TCGGATAAACCG 674
Query 691 AAGTACCACGACAAGA-CCAGATATGTCCGAAGAAGAGAGAACATGCGTTGA 741
|||||||| ||| || ||||| |||||||| | ||||||||||||||||||
Sbjct 675 AAGTACCATGACC-GAACCAGAAATGTCCGACGGAGAGAGAACATGCGTTGA 725
> Ahg934136 jgi|Araly1|934136|scaffold_402124.1
Length=746
Score = 590 bits (319), Expect = 8e-168
Identities = 585/712 (82%), Gaps = 24/712 (3%)
Strand=Plus/Plus
Query 46 TCTCCAATGGCGAAAACCCTAGCTCGCTCCACAGCGTCACGCATCACCAAGCGCTTAATC 105
||| ||||||||||||| ||| | || ||||| || ||||||||| | || || ||| ||
Sbjct 22 TCT-CAATGGCGAAAACTCTATCCCGATCCACCGCCTCACGCATCGCTAATCGTTTATTC 80
Query 106 TCCACCTCC---GGAGCCACCACTCCTTC-CC-CTT-CTTAT-ATC-C-TCTCCCGTCGA 156
||||||||| | ||| || ||||||| || ||| ||| | ||| | |||| ||||||
Sbjct 81 TCCACCTCCAAAGCCGCCGCCTCTCCTTCTCCGCTTCCTTCTCATCTCATCTCTCGTCGA 140
Query 157 TCAACCCCGGTGTTCTCCCATGCCGTCGGATTCATCTCTTCCTTGAATCGTTTCACAACG 216
|| | ||| | ||| ||| |||||||||| |||| | | |||| |||||||| |||
Sbjct 141 TCCTCACCGACGATCTTCCACGCCGTCGGATACATCCCAGCTTTGACCCGTTTCACGACG 200
Query 217 ATTCGAACTCGAATGGATAGGTCCGGTGGATCGTACTCTCCTCTAAAATCCGGTTCGAAT 276
|| || || |||||||||||||||||||| || || || || || ||||| || |||||
Sbjct 201 ATCCGGACCCGAATGGATAGGTCCGGTGGCTCATATTCGCCGCTTAAATCTGGATCGAAC 260
Query 277 TTCAGCGACCGAGCACCCACTGAGATGGCGCCGTTGTTTCCTGGCTGCGATTATGAGCAT 336
|||||||| ||| |||||||||| ||||||||| | |||||||| |||||||| ||||||
Sbjct 261 TTCAGCGATCGACCACCCACTGAAATGGCGCCGCTATTTCCTGGTTGCGATTACGAGCAT 320
Query 337 TGG-TTGATTGTAATGGACAAACCTGGAGGCGAAAA--CGCTACTAAGCAGCAAATGATT 393
||| || || || ||||| || || || |||||||| ||| | || ||||||||||||
Sbjct 321 TGGCTT-ATCGTCATGGAGAAGCCCGGCGGCGAAAATGCGC-A-GAAACAGCAAATGATT 377
Query 394 GATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGTGAGGAAGAAGCTAAGAAGAAG 453
||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 378 GATTGCTATGTTCAAACCCTAGCTAAAATTGTTGGCAGTGAGGAAGAAGCTAAAAAGAAG 437
Query 454 ATTTATAATGTATCGTGTGAAAGGTATTTTGGATTTGGTTGTGAGATTGATGAAGAGACA 513
|| || ||||| || || || ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 438 ATCTACAATGTTTCATGCGAGAGGTATTTTGGGTTTGGCTGTGAGATTGATGAGGAGACA 497
Query 514 TCAAACAAACTTGAAGGACTTCCTGGTGTTCTCTTCATT-TTACCAGACTCTTATGTTGA 572
|||||||||||||||||||||||||||||||| ||| | || || ||||||||||||||
Sbjct 498 TCAAACAAACTTGAAGGACTTCCTGGTGTTCTATTCGTGCTT-CCGGACTCTTATGTTGA 556
Query 573 TCAAGAGAACAAAGATTACGGAGCTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCC 632
|| |||| |||||||||||||||||||||||||| ||| |||||| |||||| || ||
Sbjct 557 TCCAGAGTTCAAAGATTACGGAGCTGAGCTGTTTGAGAACGGAGAAGTAGTTCCTCGGCC 616
Query 633 TCCAGAGAGACAGAGAAAGATCATTGAGTTAACGACCCAGAGAACCAAT-G-ATAAACCA 690
|| ||||||||||| | ||| | ||||||||||| || ||| | | | |||||||
Sbjct 617 ACCGGAGAGACAGAGGAGGATGGTGGAGTTAACGACTCAAAGAGG-A-TCGGATAAACCG 674
Query 691 AAGTACCACGACAAGA-CCAGATATGTCCGAAGAAGAGAGAACATGCGTTGA 741
|||||||| ||| || ||||| |||||||| | ||||||||||||||||||
Sbjct 675 AAGTACCATGACC-GAACCAGAAATGTCCGACGGAGAGAGAACATGCGTTGA 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5