BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G32583.1

Length=1962
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473449 jgi|Araly1|473449|fgenesh2_kg.1__3403__AT1G32583.1         651    0.0  


> Ahg473449 jgi|Araly1|473449|fgenesh2_kg.1__3403__AT1G32583.1
Length=499

 Score =  651 bits (352),  Expect = 0.0
 Identities = 376/388 (97%), Gaps = 0/388 (0%)
 Strand=Plus/Plus

Query  1392  CATAAACGAAAACCGCACCGCTCTTTCCAGAAAGCTACTACTCTCTCCCGACATTGGCGA  1451
             ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct  112   CATTAACGAAAACCGCACCGCTCTTCCCAGAAAGCTACTACTCTCTCCCGACATTGGGGA  171

Query  1452  TGGGACCAACAGAATCGGACAAGATTGCTCAAAAGATGATATTGTTCTCTTTCAAGGCTC  1511
             |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  172   TGGGACCAACAGGATTGGACAAGATTGCTCAAAAGATGATATTGTTCTCTTTCAAGGCTC  231

Query  1512  AACAAATCCACTTCCTAGTGGAGTTCCTTCATATACAGTTGAGATCTTCAACTCTTGTGT  1571
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  232   AACAAATCCACTTCCAAGTGGAGTTCCTTCATATACAGTTGAGATCTTCAACTCTTGTGT  291

Query  1572  CTCGGATTGCAATATAGCAGAGATCCACGTCAGTTGTGGCTGGTTCAGCTCAGTCAGACT  1631
             ||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  292   CTCCGATTGCAATATCGCAGAGATCCACGTCAGTTGTGGCTGGTTCAGCTCGGTCAGACT  351

Query  1632  GGTTAACCCTCGAGTTTTCAGGCGACTCGACTACGACGATTGTCTGGTTAACGATGGTCA  1691
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  352   GGTTAACCCTCGAGTTTTCAGGCGACTCGACTACGACGATTGTCTGGTTAACGACGGTCA  411

Query  1692  ACCTCTTGGTCCTGGACAGTCACTCTCCTTTCAATATGCTAACAGCTTCTCTTACCCTCT  1751
             ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct  412   ACCTCTTGGTCCTGGACAGACACTCTCCTTTCAATATGCTAACAGCTTCTCTTACCCCCT  471

Query  1752  CTCTGTTGCTTCAGTCTCTTGCTTCTGA  1779
             ||||||||||||||||||||||||||||
Sbjct  472   CTCTGTTGCTTCAGTCTCTTGCTTCTGA  499


 Score =  126 bits (68),  Expect = 5e-28
 Identities = 107/124 (86%), Gaps = 9/124 (7%)
 Strand=Plus/Plus

Query  1242  GAGAATGGAACATATCTACAAATTCCAACATTGGCTCTTCTTCATAGGTCTTGGAGTGTT  1301
             ||||||||||||| ||||| ||||||||||||||||||||||||||||||||    | | 
Sbjct  1     GAGAATGGAACATCTCTACCAATTCCAACATTGGCTCTTCTTCATAGGTCTT----T-T-  54

Query  1302  GCTGTCTCTTTCTCTGTCTGTGAAGGCCAATGACTTCGAAGGTTCCAATGATAGAAGAAG  1361
             | |  ||||| ||||||||||||||||||| | |||| ||||||| |||||| |||||||
Sbjct  55    G-T--CTCTTGCTCTGTCTGTGAAGGCCAACGGCTTCAAAGGTTCTAATGATGGAAGAAG  111

Query  1362  CATT  1365
             ||||
Sbjct  112   CATT  115



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 73742714320


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5