BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32585.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922349 jgi|Araly1|922349|scaffold_103630.1 889 0.0
> Ahg922349 jgi|Araly1|922349|scaffold_103630.1
Length=702
Score = 889 bits (481), Expect = 0.0
Identities = 611/671 (91%), Gaps = 19/671 (3%)
Strand=Plus/Plus
Query 1 ATGTATCAGCGACCACAAAATGATTACTTGAGAGTGAATAAGCGGAAGAGTAACTACGAC 60
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||||
Sbjct 21 ATGTATCAGCGACCACAAAATGATTACTTGAGAGTG---AAGCGGAGGAGCAACTTCGAC 77
Query 61 CAACTAAACGCTGACTCTAACTCCGTACCTCAGCTGGCGCAAACACAACCGCGAGTGCAA 120
|||||||||||||||| |||| | |||||||||| |||||| |||||||||||||||||
Sbjct 78 CAACTAAACGCTGACTATAACACTGTACCTCAGCCAGCGCAACCACAACCGCGAGTGCAA 137
Query 121 GTCTACATCATAGACAAGAACGACTTCAAAAGCCTTGTTCAACAACTAACGAGTCCTCAA 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 138 GTGTACATCATAGACAAGAACGACTTCAAAAGCCTTGTTCAACAACTAACGAGTTCTCAA 197
Query 181 CCATGTGACCGTTTACCTCAAAACATTCCAAAGCATCAAGATATTAGACCAGAGCCGATA 240
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 198 TCATGTGACCGTTTACCACAAAACATTCCAAATCATCAAGATATTAGACCAGAGCCGATA 257
Query 241 AATTGGACCTCTTCGATTCCTCCCAGTGCCATGGCGGTTCAAGAGGATCCTGATGTCTCA 300
|| ||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 258 AACCGGACCTCATCGATTCCTCCCAGTGCCATGGCGGGTCAAGAGGATCCCGATGTCTCG 317
Query 301 TTGTATATG-GCTTATCTTCAAAGCTTACTCGAAGAATCATCAGGATCTAATGGAGACCA 359
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TTGTATATGCG-TTATCTTCAAAGCTTACTCGAAGAATCATCAGGATCTAATGGAGACCA 376
Query 360 ATTCGAAGAACCTTTTGATAAGTATCATTCTCATATGATGGCTCAATC------GCAACC 413
||| ||| || | ||||| ||||||||||| |||||||||||||||| ||||||
Sbjct 377 ATTTGAACAATCACTTGATGAGTATCATTCTTATATGATGGCTCAATCTCATTCGCAACC 436
Query 414 TCAAGATCCTACACAATCAATGCCACAGTCCAATGGTTTTGAACCTTTTCCCTCTTCCTG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TCAAGATCCTACACAATCAATGCCACAGTCCAATGGTTTTGAACCTTTTCCCTCTTCCTG 496
Query 474 GTTCAATGGCTCGACCCAAGAAATGCATGGTGCTTCCTCATTGCAATCAACACGAGTTGA 533
||||||||||||| ||||| ||||||| | |||||||||||||||||||||| |||||||
Sbjct 497 GTTCAATGGCTCGCCCCAACAAATGCAAGATGCTTCCTCATTGCAATCAACAAGAGTTGA 556
Query 534 TTATGAATATCCTCTACCACTGACTCCAAACTTCACATTTTCGTCTATGACTCAACATGA 593
| ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 557 ----G--TATCCTCAACCACTGACTCCAAACTTCACATTTTCATCTATGACTCAACCTGG 610
Query 594 AGTTTTTGGTTCGGATCTAGATAGTATTGGTCCTGATGAGGATTTA-GAATTCTCATACG 652
|| ||||||| ||||||||||| ||||||||||||||||| |||| ||||| |||||||
Sbjct 611 AGGTTTTGGTCCGGATCTAGATTGTATTGGTCCTGATGAG-ATTTTTGAATTTTCATACG 669
Query 653 AAATAAATTGA 663
|||||||||||
Sbjct 670 AAATAAATTGA 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5