BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32600.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473451 jgi|Araly1|473451|fgenesh2_kg.1__3405__AT1G32600.1 608 2e-173
Ahg474743 jgi|Araly1|474743|fgenesh2_kg.1__4697__AT1G54640.1 351 4e-96
> Ahg473451 jgi|Araly1|473451|fgenesh2_kg.1__3405__AT1G32600.1
Length=843
Score = 608 bits (329), Expect = 2e-173
Identities = 438/491 (89%), Gaps = 6/491 (1%)
Strand=Plus/Plus
Query 383 ATTGCTTCTTCAAAGAGAGGACCGGTACGGT-TGTCGACAATTGTATGTATTGGATAGCA 441
|||||||||||||||| ||||||||||||| | | ||| ||||||||||||||||||||
Sbjct 350 ATTGCTTCTTCAAAGATCGGACCGGTACGGTAT-TGGACCATTGTATGTATTGGATAGCA 408
Query 442 AACCGGTTCAACAAAGAAAAATTCATCTTATGCTTTGATTTCGTTAATGAAGAGTACTCA 501
|||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 409 GACCGGTCCAACAAGGAAAAATCCATCTTATGCTTTGATTTCGTTAATGAAGAGTACTCA 468
Query 502 AAACTAAACGTTCCGATGATGCTATCAGGATTGGAGTTCAATTCATGGTTAGATGTTTCA 561
|| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 469 AACCTAAAAGTTCCCATGATGCTCTCAGGATTGGAGTTCAATTCATGGTTAGATGTTTCA 528
Query 562 AGGGGAGAACTATGTGTTATCAATCACTACCCAAGTGTAGATGACAATTTATGTGTATGT 621
|||||| |||| || ||||||| ||||||||||||| |||| ||||||||||||||||||
Sbjct 529 AGGGGACAACTGTGCGTTATCAGTCACTACCCAAGTCTAGAAGACAATTTATGTGTATGT 588
Query 622 CGACGAGAAATTAGAAGCGGCAAGAAGATTGCGAGATGGGATAGCGACCCGTGGATGAAT 681
|| ||||||||||||||||| |||||||| |||||||| || |||||||||||||||
Sbjct 589 CGCCGAGAAATTAGAAGCGGTTTGAAGATTGTAAGATGGGACAGTGACCCGTGGATGAAT 648
Query 682 GTAGCGGGAAACGATGACGAACCCGTTGATATTAGGTTTGTATGCATAGCAAAAAACGAT 741
|||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 649 ATAGCGGGAAATGATGAAGAACCCGTTGATATTAGGTTTGCATGCATAGCAAGAAACAAT 708
Query 742 GAAGTCTTTGTAGTGGTGCGATGTCGTAGTAAAGAAGAAGAGGACAATGTTTTTGTGTAC 801
||| |||| |||| || |||| || |||| |||||||||||||||| ||||| ||||||
Sbjct 709 GAAATCTTCATAGTCGTACGATCTCTTAGTGAAGAAGAAGAGGACAAGGTTTTGGTGTAC 768
Query 802 AATAAGGAACAAAACGAGTTCATTGAAGTTTTATTTTCTAGTC-AT--TT-GAAAGTGTT 857
||||||||||| |||||||||||| ||||| ||||||||||| || || |||||||||
Sbjct 769 AATAAGGAACAGAACGAGTTCATTAAAGTTCCATTTTCTAGTCGATCGTTTGAAAGTGTT 828
Query 858 GGGATGTATGA 868
|||| ||||||
Sbjct 829 GGGAAGTATGA 839
Score = 457 bits (247), Expect = 7e-128
Identities = 319/352 (91%), Gaps = 11/352 (3%)
Strand=Plus/Plus
Query 1 ATGTCGAATAAACAATCA---TCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTT 57
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGAATCAACAATCATCCTCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTT 60
Query 58 CTAGACCTTAATGAAACCACGTCTTTGAAGCTAAACGTGCCCTTTACATTACCGGCC-CA 116
|| |||||||| ||||||||||| ||||||| | ||||||||||||||||| || ||
Sbjct 61 CTCGACCTTAACAAAACCACGTCTCTGAAGCTTGATTTGCCCTTTACATTACCG-CCTCA 119
Query 117 AACTGAACCAGTCTGTATTCTTTC-TTGCCGTGGAGTGATATGTCTCACCCGCAAAGACA 175
||| ||||| |||||||| ||| | ||||| |||| |||| |||||||||| ||||||||
Sbjct 120 AACCGAACCGGTCTGTATCCTT-CATTGCCATGGAATGATGTGTCTCACCCTCAAAGACA 178
Query 176 ACAATGAGTTAGCTATTTGGAAACCTACTTCAACAAAATT-CAAGAGAGTACCGATGATT 234
||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 179 ACAATGAGTTAGCCATTTGGAAACCTACTTCAA-AAAATTTCAAGAGAGTACCGATGATT 237
Query 235 AAACGGGGTCAAACCCAAAATCTTTTGGGATTCGGTTATGACCGGGTTT-TAGATGATTA 293
|||| |||||||||| ||||||||||||||||||||||||| ||||||| || |||||||
Sbjct 238 AAACCGGGTCAAACCAAAAATCTTTTGGGATTCGGTTATGATCGGGTTTCTA-ATGATTA 296
Query 294 CAAAATTGTGACGATTATCGACAAGAAAACCTATATCTTTACGTTCAAAGAA 345
|||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 297 CAAAATTGTGACGATTATCGACCAGAAAACCTATATCTTTAGGTTCAAAGAA 348
> Ahg474743 jgi|Araly1|474743|fgenesh2_kg.1__4697__AT1G54640.1
Length=849
Score = 351 bits (190), Expect = 4e-96
Identities = 375/462 (81%), Gaps = 21/462 (5%)
Strand=Plus/Plus
Query 1 ATGTCGAATAAACAATCATCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTTCTA 60
||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGAATCAACAATCATCACATCTCATTTCATTGCACAAAGATGGTTTATACCTTCTC 60
Query 61 GACCTTAATGAAACCACGTCTT-TGAA-GCTAAACGTGCCCTTTACATTACCGGCCCAAA 118
||||| || |||||||| ||| | || ||| || |||| ||||||||||||||| |||
Sbjct 61 GACCTCAACGAAACCAC--CTTGTCAAAGCTTGACTTGCCGTTTACATTACCGGCCAAAA 118
Query 119 CTGAACCAGTCTGTATTCTTTC-TTGCCGTGGAGTGATATGTCTCACCCGCAAAGACAAC 177
| ||||| | |||||||||| | ||| |||||| |||| ||||| |||| |||||||||
Sbjct 119 CCGAACCGGCCTGTATTCTT-CATTGTCGTGGAATGATGTGTCTGACCCTTAAAGACAAC 177
Query 178 AATGAGTTAGCTATTTGGAAACCTAC-TTCA-ACAAAATTCAAGAGAGTACCGATGATTA 235
||||| |||| ||||||||||| | ||| | || ||||||||| |||| ||| |||
Sbjct 178 AATGACCTAGCGATTTGGAAACC-AGGTTCGGATGAA-TTCAAGAGAATACCAATGGTTA 235
Query 236 AACGGGGTCAAACC-CAAAATCTTTTGGGATTCGGTTATGACCGGGTTT-TAGATGATTA 293
|||||| |||||| |||| |||||||||||| || ||||||||| ||| | ||||||||
Sbjct 236 TACGGGGCCAAACCACAAA-TCTTTTGGGATTTGGATATGACCGGATTTCT-GATGATTA 293
Query 294 CAAAATTGTGACGATTATCGACAAGAAAACCTATATCTTTACGTTCAAAGAAAGTTCTTG 353
||| || |||||||| |||| ||||| ||||||| | ||||||||||||||| |||
Sbjct 294 CAAGATCGTGACGATAATCGGTTTCAAAACATATATCTATGCGTTCAAAGAAAGTTGTTG 353
Query 354 GAGAGAAAGCAAACTA-ATTCC-CTCTAGTGATTGCTTCTTCAAAGAGAGGACCGGTACG 411
||||||||| || | | | |||| | ||||| |||||||| |||| ||||||
Sbjct 354 GAGAGAAAGTGTACGAGAAACTTCTCT--TCATTGCAAATTCAAAGACCGGACTGGTACG 411
Query 412 GTTGTCGA-CAATTGTATGTATTGGATAGCAAACCGGT-TCA 451
||||| || || |||||||||||||||| || || ||| |||
Sbjct 412 GTTGTGGATCA-TTGTATGTATTGGATACCAGACAGGTCTCA 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5