BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32600.1 Length=882 Score E Sequences producing significant alignments: (Bits) Value Ahg473451 jgi|Araly1|473451|fgenesh2_kg.1__3405__AT1G32600.1 608 2e-173 Ahg474743 jgi|Araly1|474743|fgenesh2_kg.1__4697__AT1G54640.1 351 4e-96 > Ahg473451 jgi|Araly1|473451|fgenesh2_kg.1__3405__AT1G32600.1 Length=843 Score = 608 bits (329), Expect = 2e-173 Identities = 438/491 (89%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 383 ATTGCTTCTTCAAAGAGAGGACCGGTACGGT-TGTCGACAATTGTATGTATTGGATAGCA 441 |||||||||||||||| ||||||||||||| | | ||| |||||||||||||||||||| Sbjct 350 ATTGCTTCTTCAAAGATCGGACCGGTACGGTAT-TGGACCATTGTATGTATTGGATAGCA 408 Query 442 AACCGGTTCAACAAAGAAAAATTCATCTTATGCTTTGATTTCGTTAATGAAGAGTACTCA 501 |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 409 GACCGGTCCAACAAGGAAAAATCCATCTTATGCTTTGATTTCGTTAATGAAGAGTACTCA 468 Query 502 AAACTAAACGTTCCGATGATGCTATCAGGATTGGAGTTCAATTCATGGTTAGATGTTTCA 561 || ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 469 AACCTAAAAGTTCCCATGATGCTCTCAGGATTGGAGTTCAATTCATGGTTAGATGTTTCA 528 Query 562 AGGGGAGAACTATGTGTTATCAATCACTACCCAAGTGTAGATGACAATTTATGTGTATGT 621 |||||| |||| || ||||||| ||||||||||||| |||| |||||||||||||||||| Sbjct 529 AGGGGACAACTGTGCGTTATCAGTCACTACCCAAGTCTAGAAGACAATTTATGTGTATGT 588 Query 622 CGACGAGAAATTAGAAGCGGCAAGAAGATTGCGAGATGGGATAGCGACCCGTGGATGAAT 681 || ||||||||||||||||| |||||||| |||||||| || ||||||||||||||| Sbjct 589 CGCCGAGAAATTAGAAGCGGTTTGAAGATTGTAAGATGGGACAGTGACCCGTGGATGAAT 648 Query 682 GTAGCGGGAAACGATGACGAACCCGTTGATATTAGGTTTGTATGCATAGCAAAAAACGAT 741 |||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||| || Sbjct 649 ATAGCGGGAAATGATGAAGAACCCGTTGATATTAGGTTTGCATGCATAGCAAGAAACAAT 708 Query 742 GAAGTCTTTGTAGTGGTGCGATGTCGTAGTAAAGAAGAAGAGGACAATGTTTTTGTGTAC 801 ||| |||| |||| || |||| || |||| |||||||||||||||| ||||| |||||| Sbjct 709 GAAATCTTCATAGTCGTACGATCTCTTAGTGAAGAAGAAGAGGACAAGGTTTTGGTGTAC 768 Query 802 AATAAGGAACAAAACGAGTTCATTGAAGTTTTATTTTCTAGTC-AT--TT-GAAAGTGTT 857 ||||||||||| |||||||||||| ||||| ||||||||||| || || ||||||||| Sbjct 769 AATAAGGAACAGAACGAGTTCATTAAAGTTCCATTTTCTAGTCGATCGTTTGAAAGTGTT 828 Query 858 GGGATGTATGA 868 |||| |||||| Sbjct 829 GGGAAGTATGA 839 Score = 457 bits (247), Expect = 7e-128 Identities = 319/352 (91%), Gaps = 11/352 (3%) Strand=Plus/Plus Query 1 ATGTCGAATAAACAATCA---TCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTT 57 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCGAATCAACAATCATCCTCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTT 60 Query 58 CTAGACCTTAATGAAACCACGTCTTTGAAGCTAAACGTGCCCTTTACATTACCGGCC-CA 116 || |||||||| ||||||||||| ||||||| | ||||||||||||||||| || || Sbjct 61 CTCGACCTTAACAAAACCACGTCTCTGAAGCTTGATTTGCCCTTTACATTACCG-CCTCA 119 Query 117 AACTGAACCAGTCTGTATTCTTTC-TTGCCGTGGAGTGATATGTCTCACCCGCAAAGACA 175 ||| ||||| |||||||| ||| | ||||| |||| |||| |||||||||| |||||||| Sbjct 120 AACCGAACCGGTCTGTATCCTT-CATTGCCATGGAATGATGTGTCTCACCCTCAAAGACA 178 Query 176 ACAATGAGTTAGCTATTTGGAAACCTACTTCAACAAAATT-CAAGAGAGTACCGATGATT 234 ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 179 ACAATGAGTTAGCCATTTGGAAACCTACTTCAA-AAAATTTCAAGAGAGTACCGATGATT 237 Query 235 AAACGGGGTCAAACCCAAAATCTTTTGGGATTCGGTTATGACCGGGTTT-TAGATGATTA 293 |||| |||||||||| ||||||||||||||||||||||||| ||||||| || ||||||| Sbjct 238 AAACCGGGTCAAACCAAAAATCTTTTGGGATTCGGTTATGATCGGGTTTCTA-ATGATTA 296 Query 294 CAAAATTGTGACGATTATCGACAAGAAAACCTATATCTTTACGTTCAAAGAA 345 |||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 297 CAAAATTGTGACGATTATCGACCAGAAAACCTATATCTTTAGGTTCAAAGAA 348 > Ahg474743 jgi|Araly1|474743|fgenesh2_kg.1__4697__AT1G54640.1 Length=849 Score = 351 bits (190), Expect = 4e-96 Identities = 375/462 (81%), Gaps = 21/462 (5%) Strand=Plus/Plus Query 1 ATGTCGAATAAACAATCATCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTTCTA 60 ||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCGAATCAACAATCATCACATCTCATTTCATTGCACAAAGATGGTTTATACCTTCTC 60 Query 61 GACCTTAATGAAACCACGTCTT-TGAA-GCTAAACGTGCCCTTTACATTACCGGCCCAAA 118 ||||| || |||||||| ||| | || ||| || |||| ||||||||||||||| ||| Sbjct 61 GACCTCAACGAAACCAC--CTTGTCAAAGCTTGACTTGCCGTTTACATTACCGGCCAAAA 118 Query 119 CTGAACCAGTCTGTATTCTTTC-TTGCCGTGGAGTGATATGTCTCACCCGCAAAGACAAC 177 | ||||| | |||||||||| | ||| |||||| |||| ||||| |||| ||||||||| Sbjct 119 CCGAACCGGCCTGTATTCTT-CATTGTCGTGGAATGATGTGTCTGACCCTTAAAGACAAC 177 Query 178 AATGAGTTAGCTATTTGGAAACCTAC-TTCA-ACAAAATTCAAGAGAGTACCGATGATTA 235 ||||| |||| ||||||||||| | ||| | || ||||||||| |||| ||| ||| Sbjct 178 AATGACCTAGCGATTTGGAAACC-AGGTTCGGATGAA-TTCAAGAGAATACCAATGGTTA 235 Query 236 AACGGGGTCAAACC-CAAAATCTTTTGGGATTCGGTTATGACCGGGTTT-TAGATGATTA 293 |||||| |||||| |||| |||||||||||| || ||||||||| ||| | |||||||| Sbjct 236 TACGGGGCCAAACCACAAA-TCTTTTGGGATTTGGATATGACCGGATTTCT-GATGATTA 293 Query 294 CAAAATTGTGACGATTATCGACAAGAAAACCTATATCTTTACGTTCAAAGAAAGTTCTTG 353 ||| || |||||||| |||| ||||| ||||||| | ||||||||||||||| ||| Sbjct 294 CAAGATCGTGACGATAATCGGTTTCAAAACATATATCTATGCGTTCAAAGAAAGTTGTTG 353 Query 354 GAGAGAAAGCAAACTA-ATTCC-CTCTAGTGATTGCTTCTTCAAAGAGAGGACCGGTACG 411 ||||||||| || | | | |||| | ||||| |||||||| |||| |||||| Sbjct 354 GAGAGAAAGTGTACGAGAAACTTCTCT--TCATTGCAAATTCAAAGACCGGACTGGTACG 411 Query 412 GTTGTCGA-CAATTGTATGTATTGGATAGCAAACCGGT-TCA 451 ||||| || || |||||||||||||||| || || ||| ||| Sbjct 412 GTTGTGGATCA-TTGTATGTATTGGATACCAGACAGGTCTCA 452 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32671339869 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5