BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32610.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473452 jgi|Araly1|473452|fgenesh2_kg.1__3406__AT1G32610.2 953 0.0
> Ahg473452 jgi|Araly1|473452|fgenesh2_kg.1__3406__AT1G32610.2
Length=1025
Score = 953 bits (516), Expect = 0.0
Identities = 800/928 (86%), Gaps = 56/928 (6%)
Strand=Plus/Plus
Query 341 TCAGAATTTGTGAGTTTAGTCTCTCTTGTTTGAGATGGATAGGACTTGTTGGTATTATGA 400
|||||||||||| ||||||||| | ||| ||||||||||||| |||||||| || ||||
Sbjct 24 TCAGAATTTGTGGGTTTAGTCT-T-TTG--TGAGATGGATAGGCCTTGTTGGCATAATGA 79
Query 401 TCAGTTAGGTGTGAATAAGATTGGGAAGAACATAAAGAAGAGTCCTTTACCA-CAACCAC 459
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 80 TCAGTTAGGTGTGAATAAGATTGGGAAGAACATAAAGAAGAGTCCTTTA-CACCAACC-C 137
Query 460 AAGGTTATAGCATGAGCAACAATGATTTTACAAGTATTGTTCAACAGCTTAC-GGATTCT 518
|| || | | | | | | || |||||||||||||||| || || ||||
Sbjct 138 AA--TT-T--C-T------C-A--A--TT---GGTATTGTTCAACAGCTAACAGG-TTCT 176
Query 519 CCGTCGCGTGAGAGTTTACCTCAGCCTCTTCCTCGGAATCTGTTGAAGCCTCAGCAGAAG 578
|| ||||||||||||||||||||| | | || | |||| | | | | |||||||
Sbjct 177 CCATCGCGTGAGAGTTTACCTCAG-C-C-TCAGCAGAAT-ACTCG--G--T-TGCAGAAG 227
Query 579 ATTAGACCAGTGGGTCAAATACAGATAAACCGGCCCTGTGTTCCTCCTCCTGTAATGGCT 638
||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 228 ATTGGACCAGTGGCTCAAATACAGATAAACCGGCCCTGTGTTCCTCCTCCTGTTATGGCT 287
Query 639 CAACCTACTCATGAGTTTGTTGCTAGACCTCCAATGCATCCTTTGCCACATGGTTCACAA 698
||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 288 CAACCAACTCATGAGTTAGTTGCTAGACCACCAATGCATCCTTTGCCACACGGTTCACAA 347
Query 699 CCAATTATCAGTCATGGAGACCAGTTTGGGTCTAATACAGCTGAGTCTTCTGTCTCGGTG 758
||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 348 TCAATTATGGGTCATGGAGACCAATTTGGGTCTAATACAGCTGAGTCTTCTGCCTCGGCG 407
Query 759 TATATGCGTTATCGTCAAAGCTCACTTGGAGATTCTGGACCTAATGAAAACCAAATGCAG 818
| |||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 408 TTTATGTGTTATCGTCAAAGCTCACTAGGAGATTCAGGACCTAATGGTAACCAAATGCAG 467
Query 819 CCATCTCATGACAATCAACAGCAGCCACAGGTGGAAGGTCAAGCT----------CA--A 866
||| || |||| |||||||||||||||||||| ||||||||||| || |
Sbjct 468 CCAACTGATGAGTATCAACAGCAGCCACAGGTGCAAGGTCAAGCTCAACCGCACCCACTA 527
Query 867 -T-C----GCATAATCATCATTCGCCACGGTTCAATGATTCTGCACGAAACACACCCATT 920
| | |||||||||||||||| ||||||||||| |||||| ||| |||||||||||
Sbjct 528 CTACAATTGCATAATCATCATTCGTTACGGTTCAATGGTTCTGCGCGAGACACACCCATT 587
Query 921 TTGCCAACTCCTAAGTTCGACGGTCCGCCACAACAGATGCATAATAATAGTCTTCCTTCT 980
||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 588 TTGCCAACTCCTAAGTTCGACAGTCCGCCACAACAGATGTATAATAGTAGTCTTCCTTCT 647
Query 981 CCTCGATTCAACGGTCGAGGGATATTACCTACTCCAACGTCCCAATATCGTCCACAATCT 1040
||| ||||||||||||| ||||||||||| ||||| ||||||||||||| | |||||||
Sbjct 648 CCTAGATTCAACGGTCGTGGGATATTACCCACTCCTACGTCCCAATATCTTGTACAATCT 707
Query 1041 CCAACTGCTTACCGGAATTTGCTCTCCCCTAGGTCACCTTCTCCGCTGCTGTCTACAGGA 1100
|||||| | |||| |||||||||||||||||| |||||| | ||||||| ||| |||||
Sbjct 708 CCAACTACGTACCAAAATTTGCTCTCCCCTAGGCCACCTTATTCGCTGCTATCTGCAGGA 767
Query 1101 GTTCAATATCCTCCACCACTAACACCAAGAAACTATACATTCTCATCAATGGATCAACCT 1160
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 768 GTTCAATATCCTCCACCACTAACACCAAGAAGTTATACATTCTCATCAATGTCTCAACCT 827
Query 1161 GGAATTCTCGGTCCGGGCACAATTCCTCTGCCTCATGCATCTCCGTTTGGGGTTATACCA 1220
|||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 828 GGAATTCTCGGTCCAGGCACAATTCCTCTGCCTCCTGCATCTCCATTTGGGGTTTTACCA 887
Query 1221 ATATCTAGTCAAAGATGGAGAGGTTACT 1248
|| ||||||| |||||||||||||||||
Sbjct 888 ATCTCTAGTCCAAGATGGAGAGGTTACT 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5