BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32630.1
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473453 jgi|Araly1|473453|fgenesh2_kg.1__3407__AT1G32630.1 821 0.0
> Ahg473453 jgi|Araly1|473453|fgenesh2_kg.1__3407__AT1G32630.1
Length=757
Score = 821 bits (444), Expect = 0.0
Identities = 599/670 (89%), Gaps = 25/670 (4%)
Strand=Plus/Plus
Query 31 AGAAAGGTACCTCCTTTCATCAATCTATAGTCAGAACAAAGAACAATCTCTCTCTTTCTC 90
|||||| |||||| |||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct 1 AGAAAGATACCTCTTTTCATCAATTTTTAG--ACAACAAAGAACAATCTCTCTCTTTCTC 58
Query 91 GTTCATAAATCTCCAAAA-CCACTCGAGCAAGAAGAGAACCGAGTCGGGCAATCGCAAAT 149
|||||||| || |||| |||||||||||||||||||||||| || ||||||||| | |
Sbjct 59 CTTCATAAAACTTGAAAACCCACTCGAGCAAGAAGAGAACCGACTCAGGCAATCGCTACT 118
Query 150 TTAGTTTCTTTGTTCACTGAAGCTTCAAAGTGTTTTGAGTAATTGGAATTGAAGGAAAGA 209
||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||
Sbjct 119 TTAGTTTCTTTGTTCACCGAAG-TTCAAAGTGTTTTGAGTAATGGGAATTGAAGGAGAGA 177
Query 210 TGAGCAATGGTGGTTTGAGCATTGATGAGAAAGAAGGGTTGATAGACAAAGATGAAGTCA 269
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGAGTAATGGTGGTTTGAGCGTTGATGAGAAAGAAGGGTTGATAGACAAAGATGAAGTCT 237
Query 270 TGATCCGTCGAATGAAGAA-CAGAGAAAGACAACGTAGGTATCGAGCCAGGAAACGGATG 328
|| |||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||
Sbjct 238 TGCTCCGTCGAATGAAGAATC-GAGAAAGACAACGTAGGTATAGAGCAAGGAAACGGATG 296
Query 329 CGGGAAGAAGAAGCGGGTAACGATGATAATCTTTCGTTTGAGACAATGGGAAAACaagaa 388
||||||||||||||||||| ||||||| |||| |||||||||||||||||| |||| |
Sbjct 297 CGGGAAGAAGAAGCGGGTATCGATGATTATCTGTCGTTTGAGACAATGGGACAACA-G-- 353
Query 389 gaagaagaagaagaagaCGAGGGACTAGAGTTTAATGGACCTAGTGGTTATGTTGAGAAC 448
||||||||||| | || | ||||||||||||||||||||||||||||||||||||
Sbjct 354 GAAGAAGAAGA-G--GA--A----CTAGAGTTTAATGGACCTAGTGGTTATGTTGAGAAC 404
Query 449 TTTGTGCGGCGGGTTTATTGCGATAGAAATTGGAAAAAAGAAGCTAGAAGAGCTCATTTG 508
||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 405 TTTGTGCGGCGTGTTTATTGCGATAGAGATTGGAAAAAAGAGGCTAGAAGAGCTCATTTG 464
Query 509 ATTATGAACAAGGCTCAAGATAGTTCTTGTGAGTCGGTTAAACGGAAGATAAGGCCGCAT 568
|||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 465 TTTATGAACAAGGCTCAAGATGGTTCTTGTGAGTCGGTTAAATGGAAGATAAGGCGGCAT 524
Query 569 CGTCGAGATTGGAAAGCTGAAGCTAGAAAGAAGAAAACTTGATTCTTGAGGATTGGT--- 625
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 525 GGAAGAGATTGGAAAGCTGAAGCTAGAAAAAAGAAAACTTGATTCTTGAGGATTGGTTTG 584
Query 626 --CAGGTTGCTAGAGGATCTTGCGAGGT-GATCGAGGAAGAGAATGCACAAACAAAGCAG 682
||||||||||||| ||||||||| || | | ||||| |||||| ||| | |||| |||
Sbjct 585 GTCAGGTTGCTAGAGTATCTTGCGAAGTTGTT-GAGGATGAGAATCCACTAGCAAAACAG 643
Query 683 ATTTCAGATT 692
|||| |||||
Sbjct 644 ATTTGAGATT 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5