BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32640.1
Length=2179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922353 jgi|Araly1|922353|scaffold_103634.1 3227 0.0
Ahg915381 jgi|Araly1|915381|Al_scaffold_0008_132 154 3e-36
> Ahg922353 jgi|Araly1|922353|scaffold_103634.1
Length=2116
Score = 3227 bits (1747), Expect = 0.0
Identities = 2006/2129 (94%), Gaps = 25/2129 (1%)
Strand=Plus/Plus
Query 56 ACCGGTCACCGGTTTATGGAATGACTGATTACCGGCTACAACCAACGATGAATCTTTGGA 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ACCGGTCACCGGTTTATGGAATGACTGATTACCGGCTACAACCAACGATGAATCTCTGGA 60
Query 116 CCACCGACGACAACGCTTCTATGATGGAAGCTTTCATGAGCTCTTCCGATATCTCAACTT 175
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCACCGACGATAACGCTTCTATGATGGAAGCTTTCATGAGCTCTTCCGATATCTCAACTT 120
Query 176 TATGGCCTCCGGCGTCGACGACAAC--C-ACGACGGCGACGACTG--AA-A-CAACTCCG 228
||||||| ||||| |||| || || | || ||| | ||||| | || | ||||| ||
Sbjct 121 TATGGCCACCGGCAACGACCACGACGGCGACTACGACTACGAC-GACAACATCAACTACG 179
Query 229 ACGCCGGCGATGGAGATTCCGGCACAGGCGGGATTTAATCAAGAGACTCTTCAGCAACGT 288
|| ||||||||||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 180 GCGACGGCGATGGAGATTCCGGCACCGGCGGGATTTAACCAGGAGACTCTTCAGCAACGT 239
Query 289 TTACAAGCTTTGATTGAAGGAACACACGAAGGTTGGACCTACGCTATATTCTGGCAACCG 348
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTACAAGCTTTGATTGAAGGGACACACGAAGGTTGGACCTACGCTATATTCTGGCAACCG 299
Query 349 TCGTATGATTTCTCCGGCGCCTCCGTGCTCGGATGGGGAGATGGTTATTACAAAGGTGAA 408
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 TCGTACGATTTCTCCGGCGCCTCCGTGCTCGGCTGGGGAGATGGTTATTACAAAGGTGAA 359
Query 409 GAAGATAAAGCAAACCCGAGACGGAGATCGAGTTCGCCGCCGTTTTCTACTCCGGCGGAT 468
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAGATAAAGCTAAGCCGAGACAGAGATCGAGTTCGCCGCCGTTTTCTACTCCGGCGGAT 419
Query 469 CAGGAGTACAGGAAAAAAGTGTTGAGAGAGCTTAACTCGTTGATCTCCGGTGGTGTTGCT 528
||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 420 CAGGAGTACCGGAAAAAAGTGTTGAGAGAGCTTAATTCGTTGATCTCCGGCGGTGTTGCT 479
Query 529 CCGTCGGATGACGCTGTTGATGAGGAGGTGACGGATACGGAATGGTTTTTCTTGGTTTCG 588
|||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 480 CCGTCGGATGACGCCGTTGACGAGGAAGTGACGGATACGGAGTGGTTTTTCTTGGTTTCG 539
Query 589 ATGACGCAGAGCTTCGCTTGCGGTGCGGGATTAGCTGGTAAAGCGTTTGCAACGGGTAAC 648
||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 540 ATGACGCAGAGCTTCGCTTGCGGTGCGGGATTAGCGGGTAAAGCGTTTTCGACGGGTAAC 599
Query 649 GCGGTTTGGGTTTCCGGGTCAGATCAATTATCCGGGTCGGGTTGTGAACGGGCTAAGCAA 708
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 600 GCGGTTTGGGTTTCTGGGTCGGATCAATTATCCGGGTCGAGTTGTGAACGGGCTAAGCAA 659
Query 709 GGAGGAGTGTTTGGGATGCATACTATTGCGTGTATTCCTTCGGCGAACGGAGTTGTGGAA 768
|| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 660 GGTGGAGTTTTTGGGATGCAGACAATTGCGTGTATTCCTTCGGCGAACGGAGTTGTGGAA 719
Query 769 GTCGGGTCAACGGAGCCGATCCGACAGAGTTCGGACCTTATTAACAAGGTTCGAATTCTT 828
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 GTCGGGTCAACGGAGCAGATCCGACAGAGTTCGGATCTTATTAACAAGGTTCGAATTCTT 779
Query 829 TTCAATTTCGACGGCGGAGCTGGAGATTTATCGGGTCTTAATTGGAATCTTGACCCGGAT 888
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 780 TTCAATTTCGACGGCGGAGCTGGAGATTTGTCGGGTCTTAATTGGAATCTTGACCCGGAT 839
Query 889 CAAGGTGAGAACGACCCGTCTATGTGGATTAATGACCCGATTGGAACACCTGGATCTAAC 948
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 840 CAAGGTGAGAACGACCCGTCTATGTGGATTAATGACCCGATTGGAGCACCTGAATCCAAC 899
Query 949 GAACCGGGTAACGGAGCTCCAAGTTCTAGCTCCCAGCTTTTTTCAAAGTCTATTCAGTTT 1008
||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 900 GAACCGGGTAATGGAGCTCCGAGTTCTAGCTCCCAGGTTTTTTCAAAGTCTATACAGTTC 959
Query 1009 GAGAACGGTAGCTCAAGCACAATAACCGAAAACCCGAATCTGGATCCGACTCCGAGTCCG 1068
||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 960 GAGAATGGTAGCTCAAGCACAATAACTGAAAACCCGAATCCGGATCCGACTCCGAGTCCG 1019
Query 1069 GTTCATTCTCAGACCCAGAATCCGAAATTCAATAACACTTTCTCCCGAGAACTTAATTTT 1128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTTCATTCTCAGACCCAGAATCCGAAATTCAATAACACTTTCTCCCGAGAACTTAATTTC 1079
Query 1129 TCGACGTCAAGTTCTACTTTAGTGAAACCAAGATCCGGCGAGATATTAAACTTCGGCGAT 1188
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 1080 TCGACGTCAAGTTCTACTTTAGTGAAACCAAGATCCGGCGAGATAGTAAGCTTCGGTAAT 1139
Query 1189 GAAGGTAAACGAAGCTCCGGAAACCCGGATCCAAGTTCTTATTCGGGTCAAACACAATTC 1248
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 GATGGTAAACGGAGCTCCGGAAACCCGGATCCAAGTTCTTATTCGGGTCAACCACAATTC 1199
Query 1249 GAAAACAAAAGAAAGAGGTCGATGGTTTTGAACGAAGATAAAGTTCTATCATTCGGAGAT 1308
|||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1200 GAAAACAAAAGAAAGAAGTCTATGGTATTGAACGAAGATAAAGTCCTATCATTCGGAGAT 1259
Query 1309 AAAACCGCCGGAGAATCAGATCACTCCGATCTAGAAGCTTCCGTCGTGAAAGAAGTAGCA 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1260 AAAACCGCCGGAGAATCAGATCACTCCGATCTAGAAGCTTCCGTCGTGAAAGAAGTACCG 1319
Query 1369 GTAGAGAAACGTCCAAAGAAACGAGGAAGAAAGCCAGCAAACGGTAGAGAAGAGCCACTA 1428
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1320 GTAGAGAAACGTCCAAAGAAACGAGGAAGAAAACCAGCAAACGGTAGAGAAGAGCCACTA 1379
Query 1429 AACCACGTCGAAGCAGAGAGACAAAGACGCGAGAAACTAAACCAAAGATTCTACGCGTTA 1488
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1380 AACCACGTCGAAGCAGAGAGACAAAGACGCGAGAAACTAAATCAAAGATTCTACGCGTTA 1439
Query 1489 CGAGCGGTTGTACCAAACGTTTCAAAAATGGATAAAGCTTCG-TTACTCGGTGACGCAAT 1547
||||||||||||||||||||||| |||||||||||||||||| || || || ||||||||
Sbjct 1440 CGAGCGGTTGTACCAAACGTTTCGAAAATGGATAAAGCTTCGCTT-CTTGGAGACGCAAT 1498
Query 1548 CGCTTACATCAACGAGCTTAAATCCAAAGTAGTCAAAACAGAGTCAGAGAAACTCCAAAT 1607
| |||||||||||||||||||||| ||||||||||||||||| ||||||||| | |||||
Sbjct 1499 CTCTTACATCAACGAGCTTAAATCGAAAGTAGTCAAAACAGAATCAGAGAAAATACAAAT 1558
Query 1608 CAAGAACCAGCTCGAGGAAGTGAAACTCGAGCTCGCCGGAAGAAAAGCGAGTGCTAGTGG 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CAAGAACCAGCTCGAGGAAGTGAAACTCGAGCTCGCCGGAAGAAAAGCGAGTGCTAGTGG 1618
Query 1668 AGGAGATATGTCGTCTTCGTGTTCTTCGATTAAACCGGTGGGGATGGAGATTGAAGTGAA 1727
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1619 TGGAGATATGTCGTCGTCGTGTTCGTCGATTAAACCGGTGGGGATGGAGATTGAAGTGAA 1678
Query 1728 GATAATTGGTTGGGACGCAATGATTAGAGTTGAATCTAGTAAGAGGAATCATCCGGCGGC 1787
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1679 GATAATTGGTTGGGATGCGATGATTAGAGTTGAATCAAGTAAGAGGAATCATCCGGCGGC 1738
Query 1788 GAGGTTGATGTCGGCGTTGATGGATTTGGAGTTGGAAGTGAATCACGCGAGTATGTCGGT 1847
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1739 GAGGTTGATGTCGGCGTTGATGGATTTGGAGCTGGAGGTGAATCACGCGAGTATGTCGGT 1798
Query 1848 GGTTAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGTTTTAGGATCTATACGCA 1907
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1799 GGTTAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGATTTAGGATCTATACGCA 1858
Query 1908 AGAACAGCTCAGAGCAAGTTTGATTTCAAAAATCGGTTAAAAGGGTGTGTTTTGGGAAGT 1967
||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1859 GGAACAGCTCCGAGCAAGTTTGATTTCAAAAATCGGTTAAAAGGGTGTGTTTTGA-AATT 1917
Query 1968 TTAGAAAGTTATGGGGTCAAATCATAATTAATTCGTTTTAGTGGCTTCAGTAATTTTGTA 2027
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1918 TTAGAAAGTTATGGGGTCAAATCATTATTAATTCGTTTTAGTGGCTTCAGTAATTTTGTA 1977
Query 2028 GATTTTAGTTTTGTAAG-aa-aaaaaTCTTAAAATAGAGCGACAAGTTTCTTCTTTTGCT 2085
||||| |||||||| | || ||||||||||||||||||||||||||||||| || |||
Sbjct 1978 GATTT-AGTTTTGTT-GTAAGAAAAATCTTAAAATAGAGCGACAAGTTTCTT-TT--GCT 2032
Query 2086 CTATGTTTGAGTCTG-TATCGTTTTATTGTTGTATC-TCCTCAATGAGTAAACTTGTATA 2143
||||||| |||||| ||||||| ||||||||||| ||| |||| |||||| |||| |
Sbjct 2033 CTATGTT-GAGTCTTATATCGTT--ATTGTTGTATCATCC--AATGTGTAAACGTGTACA 2087
Query 2144 TATTGATATGAGTAATATGAGTTAGTTAC 2172
||||||||||| ||||||| |||||||||
Sbjct 2088 TATTGATATGAATAATATGTGTTAGTTAC 2116
> Ahg915381 jgi|Araly1|915381|Al_scaffold_0008_132
Length=1512
Score = 154 bits (83), Expect = 3e-36
Identities = 160/197 (81%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 1383 AAAGAAA-CGAGGAAGAAAGCCAGCAAACGGTAGAGAAGAGCCACTAAACCACGTCGAAG 1441
||| ||| || || ||||| || || | |||||||| |||| | |||||||| ||||
Sbjct 963 AAA-AAAGCGCGGGAGAAAACCGGCGCATGGTAGAGATCAGCCGTTGAACCACGTGGAAG 1021
Query 1442 CAGAGAGACA-AAGACGCGAGAAACTAAACCAAAGATTCTACGCGTTACGAGCGGTTGTA 1500
|||||||| | ||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1022 CAGAGAGA-ATGAGACGTGAGAAGCTAAACCACAGATTCTACGCGTTACGAGCGGTTGTA 1080
Query 1501 CCAAACGTTTCAAAAATGGATAAAGCTTCGTTACTCGGTGACGCAAT-CGCTTACATCAA 1559
|||||||| || |||||||| ||| | ||||| |||| ||||| | || |||||| ||
Sbjct 1081 CCAAACGTATCGAAAATGGACAAAACGTCGTTGCTCGAAGACGCGGTTCG-TTACATAAA 1139
Query 1560 CGAGCTTAAATCCAAAG 1576
||| || ||||| ||||
Sbjct 1140 CGAACTGAAATCAAAAG 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82008297485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5