BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32660.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922465 jgi|Araly1|922465|scaffold_103746.1 739 0.0
Ahg913079 jgi|Araly1|913079|Al_scaffold_0001_3333 523 1e-147
Ahg913323 jgi|Araly1|913323|Al_scaffold_0001_3577 484 5e-136
Ahg473308 jgi|Araly1|473308|fgenesh2_kg.1__3262__AT1G30780.1 134 2e-30
> Ahg922465 jgi|Araly1|922465|scaffold_103746.1
Length=1260
Score = 739 bits (400), Expect = 0.0
Identities = 981/1248 (79%), Gaps = 94/1248 (8%)
Strand=Plus/Plus
Query 140 AAG-ATGAGAAAGAAGAC-ACAAACCCTAGTAAGTTAGA---GTTAGATTCGCTGCCTCT 194
||| ||||||||| | || |||||||||||||||||||| ||||||||||| |||||
Sbjct 35 AAGAATGAGAAAG-ACACAACAAACCCTAGTAAGTTAGACTTATTAGATTCGCTCCCTCT 93
Query 195 TGACCTAAAGATGGCGATACTGACTAGAATCCCTGCCAAGTCTCTTATGAAGTTGCGATG 254
||| ||||||||||| ||||| |||||| | ||||||||||||| | ||| || |||||
Sbjct 94 TGATCTAAAGATGGCTATACTAACTAGATTGTCTGCCAAGTCTCTAAAGAATTTTCGATG 153
Query 255 CGTGTCAAAGATGTGGTCTTCCATCATCCGAAGCCGAGGTTTCATTGATTCCTACTACGC 314
||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |
Sbjct 154 CGTGTCAAAGATGTGGTCTTCCATCATCCGAAGCCGAGGATTCATTGATTCCTTCTTCTC 213
Query 315 TATCTCCTCGAAGCAATCACGGTTTATAGTCGGTTTGA-GTAACGCTGCATTTAACGAGC 373
||| ||| | ||||||||||||||||||||| |||| | ||||| || ||| ||||
Sbjct 214 TATGTCCGCAAAGCAATCACGGTTTATAGTCAGTTT-ATGTAACATTGTATTCGGTGAGC 272
Query 374 CTGAGAAGCAGCTTACCTTCCTCTTCTCGTTTTCCCACGAAGACGGAGA-GAAGTCTTCT 432
||||| || |||||| ||| ||||||||||||| ||||| || ||||| || |||||||
Sbjct 273 CTGAGGAGAAGCTTATCTTATTCTTCTCGTTTTCACACGACGAGGGAGATGA-GTCTTCT 331
Query 433 TCTTCTTCTT-T--GGTACCCAACTTCGAGATGGCAGTTCC--CTGC-AGCTT-AGCTGG 485
|||||||||| | ||||||||| ||||||||||| |||| ||| ||||| || |
Sbjct 332 TCTTCTTCTTCTTTGGTACCCAATTTCGAGATGGCTCTTCCTGCTGTGAGCTTTAGTTT- 390
Query 486 CCT-CTCACACTCTTTG-GCTTCTTTCCATGGCATTCTCGCTGTTGAA---G--G-TAAG 537
| | |||| |||| | |||||||| |||||||||||| |||||||| | | | ||
Sbjct 391 C-TACTCAGGGTCTT-GCGCTTCTTTACATGGCATTCTCACTGTTGAAACTGAAGGTCAG 448
Query 538 --G-TGATGTGTAACCCTAACACGGAGCAATTCACTACGTTACCC-GTTGGCACCATCTT 593
| ||||||||||||||| ||| |||||| || || |||| | || | | || ||
Sbjct 449 TTGATGATGTGTAACCCTAGCACCGAGCAAGTCGTTAAGTTAACTAGT-GACTGTATTTT 507
Query 594 TGTGGGGTACGATCCGATTGACGATCAATACAAAGCGCTCGGCTTTGATTTTGATAA--- 650
||| || |||||||||||||| ||||||||||||| | || ||| ||||
Sbjct 508 TGTTGGTTACGATCCGATTGATGATCAATACAAAGTATTATCCTGGGATAAC-ATAATTT 566
Query 651 GAGATGTCATGGTAATGCT-AT-TG--GTCACAAGGT-TTGGACATTGGGAGGTGGTGAA 705
| || | || ||||||| | | | |||||||| || |||||||||| |||| ||
Sbjct 567 GGGAGG--ATCCTAATGCTCACCTAAAG-CACAAGGTATTA-ACATTGGGAGATGGTCAA 622
Query 706 GGAATG-AGACAGATTAGAGGTGACC--TTGCACCTTATA-GACCGATACTACTACCAAA 761
||| || ||||| |||| | | ||| || |||||||| | | |||| | | ||||||
Sbjct 623 GGA-TGGAGACACATTAAAAAT-ACCACTTT-ACCTTATATGGC-GATA-T-C-ACCAAA 675
Query 762 TGTATGCATCAACGGTGTTATCTACTATGGTGC-TCATACCTTATCCCAAACCAAAGATC 820
|||||||||||||||| || ||||||||||||| | || |||| | ||||| | |||||
Sbjct 676 TGTATGCATCAACGGTTTTCTCTACTATGGTGCGT-ATTGCTTAACACAAACTAGAGATC 734
Query 821 CAGTTATTGTGTGTTTTGATGTTAGATCTGAGAAACTAAGTTTTATCACTGCACCTGCGG 880
||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 735 CAGTTATGGTGTGTTTTGATGTTAGATCTGAGAAACTAAGTTTTATCAAAGCGCCTCCGG 794
Query 881 TTGTCCTCCAATCGGGGATG-AAGTCTA-TACTCATAGACTACAAAGGGAAGCTAGCTTC 938
|||||||||||| ||||| | ||| | | | ||||||| ||||||||||||||||||||
Sbjct 795 TTGTCCTCCAATGGGGGAAGGAAG-C-AGTGTTCATAGAATACAAAGGGAAGCTAGCTTC 852
Query 939 TATTGTGAGAAACTCCTGTGGTGGTTGTATCAGCAGTTTTGTTTTTTGGATACTAGAAGA 998
|||||| ||||| | | ||| | | || || ||||||| ||| ||||||||||||||
Sbjct 853 CATTGTGGGAAACACTTATGGAGCT-GTCTCT--AGTTTTGATTTATGGATACTAGAAGA 909
Query 999 CCCCAAGAAACATGAATGGTCTAGGCAAAGTTGTGAT-TTTCCCTA-CTCTCTGTGGGAT 1056
| |||||||||||||||| | |||| |||| | ||||| || |||| ||||||||
Sbjct 910 CGTTGAGAAACATGAATGGTCAAAACAAAAATGTG-TGTTTCC-TATCTCTGTGTGGGAT 967
Query 1057 TATGTTGGGAATG-TCAGAATATGTTT-CTTTGGCACCAACAAGGCTGGTGAGATCATTA 1114
| | ||| || | |||| | ||| | || || || | ||||||||||||||| |
Sbjct 968 TTTTTTGACCTTGGTG-GAATGTCTTTTCCA-GGTACAAATAGGGCTGGTGAGATCATCA 1025
Query 1115 TTGCCCCAATGTTT-TTGTCACG-CGATGTTCGGTCCTTCTACATTTTCTACTATAATGT 1172
| || |||| |||| |||||| | | || ||| ||||||| ||||||||||| |||||
Sbjct 1026 TGGCTCCAA-GTTTGTTGTCA-GTCAATCTTCAACCCTTCTATATTTTCTACTACAATGT 1083
Query 1173 TGAAACAAAAACCATGAGAAGAGTTAGGCTCCGAGGAATTGGA-AGC-GAT-ATAGAGTT 1229
||||||||||| ||| |||||||||||||||| |||||||||| | | | | | ||||||
Sbjct 1084 TGAAACAAAAAACATAAGAAGAGTTAGGCTCCTAGGAATTGGAGA-CAG-TGA-AGAGTT 1140
Query 1230 TAGGCGCTCTTATGGATCCGAAAA-CAAGTTGTGTAATTGCCAT-GTCCGTATCGCACAT 1287
||||||||||||||||| || | || | | || || | ||| ||||||||||
Sbjct 1141 TAGGCGCTCTTATGGATTCGGGGAGCACGCTA---AA--GCTTTTGTCAATATCGCACAT 1195
Query 1288 CAACACGTTGAGAGTATTGCCTT-TTTAAAGGATCATATAAATTTAAG 1334
|||||||| ||||| |||||||| ||||| ||||| | | | ||||||
Sbjct 1196 CAACACGTCGAGAGCATTGCCTTCTTTAA-GGATCCTTTTA-TTTAAG 1241
> Ahg913079 jgi|Araly1|913079|Al_scaffold_0001_3333
Length=498
Score = 523 bits (283), Expect = 1e-147
Identities = 416/476 (87%), Gaps = 25/476 (5%)
Strand=Plus/Plus
Query 1 ATGAAACGCAAGGACGATGACCAGGAGGACAGA-TCATGTAGCAG-CGCAAGTAAGTTAG 58
|||||||||||||||||||| || | |||||| || | |||||| | ||||||||||||
Sbjct 1 ATGAAACGCAAGGACGATGA-CA--ATGACAGATTC-TATAGCAGTC-CAAGTAAGTTAG 55
Query 59 ATCCGATCCCTCTTGATCTAAAGATGGCTACAGTGCCTACCAAATCTCATATGAAGAAGA 118
|||| || |||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct 56 ATCCAATTCCTCTTGATCTAAAGATGACTACAGTGCCTAGCAAATCTCATATGAAAAAGA 115
Query 119 GTCACCAAAATAAACTCGAGGAAGATGAGAAAGAAGAC-ACAAACCCTAGTAAGTTAGAG 177
| |||||||||||||| |||||||||||||| | | || |||||||| | || || ||
Sbjct 116 GCCACCAAAATAAACTTGAGGAAGATGAGAACG-ACACAACAAACCC---T-AG-TA-AG 168
Query 178 TTAGATTCGCTGCCTCTTGACCTAAAGATGGCGATACTGACTAGAATCCCTGCCAAGTCT 237
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 169 TTAGATTCGCTCCCTCTTGATCTAAAGATGGCTATACTGACTAGAATGCCTGCCAAGTCT 228
Query 238 CTTATGAAGTTGCGATGCGTGTCAAAGATGTGGTCTTCCATCATCCGAAGCCGAGGTTTC 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 229 CTTATGAAGTTGCGATGCGTGTCAAAGATGTGGTCTTCCATCATCCGAAGCCGAGGATTC 288
Query 298 ATTGATTCCTACTACGCTATCTCCTCGAAGCAATCACGGTTTATAGTCGGTTTGAGTAAC 357
||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||
Sbjct 289 ATTGATTCCTACTACGCTACCTCCTCGAGGCAATCACGGTTTATTGTCGGTTTTAGTAAC 348
Query 358 GCTGCATTTAACGA-GCCTGAGAAGCAG-CTTACCTTCCTCTTCTCGTTTTCCCACGAAG 415
| || ||| | | ||||||| || || ||||||||| ||||||| ||||| ||||| |
Sbjct 349 GGTGTATTCGGC-ACGCCTGAGGAG-AGGCTTACCTTCTTCTTCTCATTTTCACACGACG 406
Query 416 ACGGAGAGAAGTCTTCTTCTTCTTCTTTGGTACCCAACTTCGAGATGGCAGTTCCC 471
| || || ||| | ||||||||| | | |||||| |||||||||||||||||||
Sbjct 407 A-GG-GACAAGAGT-CTTCTTCTT-T--GCTACCCACCTTCGAGATGGCAGTTCCC 456
> Ahg913323 jgi|Araly1|913323|Al_scaffold_0001_3577
Length=1029
Score = 484 bits (262), Expect = 5e-136
Identities = 619/781 (79%), Gaps = 65/781 (8%)
Strand=Plus/Plus
Query 218 CTAGAATCCCTGCCAAGTCTCTTATGAAGTTGCGATGCGTGTCAAAGATGTGGTCTTCCA 277
||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 14 CTAGATTGCCTGCCAAGTCTCTTATGAAGTTGCGACGCGTGTCAAAGATATGGTCTTCCA 73
Query 278 TCATCCGAAGCCGAGGTTTCATTGATTCCTACTACGCTATCTCCTCGAAGCAATCACGGT 337
|||||||||||||||| |||||| |||||| |||| |||| |||||||||||||| ||||
Sbjct 74 TCATCCGAAGCCGAGGGTTCATTAATTCCTTCTACTCTATATCCTCGAAGCAATCGCGGT 133
Query 338 TTATAGTCGGTTTGAGTAAC-GCTGCATTTAACGAGCCTGAGAAGCAGCTTACCTTCCTC 396
||||||||| |||||||||| | || ||| | |||||| | || | ||||||||| ||
Sbjct 134 TTATAGTCGCTTTGAGTAACAG-TGTATTCGGCAAGCCTGCGGAGAAACTTACCTTCTTC 192
Query 397 TTCTCGTTTTCCCACGAAGACGGAGA-GAAGTCTTCTTCTTCTTCTTTGGTACCCAACTT 455
|||| |||||||||||| |||||||| || || ||||||||| | | ||||||||||
Sbjct 193 TTCTTGTTTTCCCACGATGACGGAGATGA---CT-CTTCTTCTT-T--GCTACCCAACTT 245
Query 456 CGAGATGGCAGTTCCC---TGCAGCTT-AGCTGGCCTCTCACACTCTTTGGCTTCTTTCC 511
|||||||||| ||||| |||||||| || |||| ||||| | | || |||||||||||
Sbjct 246 CGAGATGGCAATTCCCAACTGCAGCTTTAG-TGGCTTCTCATA-T-TT-GGCTTCTTTCC 301
Query 512 ATGGCATTCTCGCTGTT-GA--AGG---TAAG-G-T-GATGTGTAACCCTAACACGGAGC 562
||||||||||||||||| || || |||| | | |||||||||||||| ||||||||
Sbjct 302 ATGGCATTCTCGCTGTTAGAGCAGACCATAAGTGGTTGATGTGTAACCCTAGCACGGAGC 361
Query 563 AATTCACTACGTTACCCGTTGGCACCATCTTT-GTGGGGTACGATCCGATTGACGATCAA 621
||||| || |||||||| | ||| |||| ||||| |||||||| ||||| ||||||
Sbjct 362 AATTCGTTAAGTTACCCGCTACCACTG-CTTTCGTGGGATACGATCCCATTGATGATCAA 420
Query 622 TACAAAGCGCTCGGCTTTGATTTTGATAAGAGATGTCATGGTAATGCT-AT-TG--GTCA 677
||||||| | || || | || | || | | || ||||| | || || | ||
Sbjct 421 TACAAAGTATTATCCTG-GAATA-GA-ACTAGGTATGATTCTAATGGTCATCTGCAG-CA 476
Query 678 CAAGGT-TTGGACATTGGGAGGTGGTGAAGGAATG-AGACAGATTAGAGGTGACC--TTG 733
|||||| || |||||||||| |||||||| | || ||||| |||| || | ||| ||
Sbjct 477 CAAGGTATTA-ACATTGGGAGATGGTGAAGTA-TGGAGACACATTAAAGAT-ACCCCTTT 533
Query 734 CACCTTATAGACCGATA---CTACT-AC-CAAATGTATGCATCAACGGTGTTATCTACTA 788
|||||||| | ||| | ||| | ||||| ||||| |||||||| || |||||||
Sbjct 534 -ACCTTATA--CTTATAGGGCGACTCAAACAAATATATGCGTCAACGGTTTTCTCTACTA 590
Query 789 TGGTGCTCATACCTTATCCCAAACCAAAGATCCAGTTATTG-TGTGTTTTGATGTTAGAT 847
|| |||| | ||| ||||||| |||||| ||| ||| | ||||||||||||||||
Sbjct 591 TGTTGCT--TGG-TTAACCCAAACTAAAGATATGGTT-TTGGTTTGTTTTGATGTTAGAT 646
Query 848 CTGAGAAACTAAGTTTTATCACTGCACCTGCGGTTGTCCTCCAATCGGGGATG-AA-GTC 905
|||||||||| |||||||||| ||||||| || ||| | |||| ||||| | || | |
Sbjct 647 CTGAGAAACTGAGTTTTATCAATGCACCTAAGGATGTTGTGCAAT-GGGGAAGGAAAG-C 704
Query 906 TA-TACTCATAGACTACAAAGGGAAGCTAGCTTCTATTGTGAGAAACTCCTG-TGGTGGT 963
| || ||||||| |||||||||||||| ||||| ||||||||| || ||| |||| ||
Sbjct 705 -AGTATTCATAGAATACAAAGGGAAGCTTGCTTCCATTGTGAGAGAC-CCTTATGGTCGT 762
Query 964 T 964
|
Sbjct 763 T 763
Score = 183 bits (99), Expect = 2e-45
Identities = 202/248 (81%), Gaps = 22/248 (9%)
Strand=Plus/Plus
Query 1088 GCACCAACAAGGCTGGTGAGATCATTATTGCCCCAATGTTTTTGTCA-CGCGATGTTCGG 1146
|||||||||||||||||||||||||||| ||||||| | |||||| | |||| ||||
Sbjct 770 GCACCAACAAGGCTGGTGAGATCATTATGGCCCCAAAGAGGTTGTCATC-CGATTTTCGA 828
Query 1147 TCCTTCTACATTTTCTACTATAATGTTGAAACAAAAACCATGAGAAGAGTTAGGCTCCGA 1206
||||||||||||||||||| | |||||||||||||| ||| |||||||||||||||| |
Sbjct 829 CCCTTCTACATTTTCTACTACATTGTTGAAACAAAAAACATAAGAAGAGTTAGGCTCCTA 888
Query 1207 GGAATTGGA-AGC-GAT-ATAGAGTTTAGGCGCTCTTATGGAT-CCGAAAACAAGTT-G- 1260
||||||||| | | | | | ||||||||||||||||||||||| || ||| | | |
Sbjct 889 GGAATTGGAGA-CAG-TGA-AGAGTTTAGGCGCTCTTATGGATTCC-AAAGGACGGCCGG 944
Query 1261 -T---GT-AAT-TGCCATGTCC-GTATCGCACATCAACACGTTGAGAGTATTGCCTTTTT 1313
| || ||| | | ||| | | ||||||||||||||||| |||||| ||| ||||||
Sbjct 945 CTCCCGTCAATCT-CT-TGTTCTG-ATCGCACATCAACACGTCGAGAGTGTTGGCTTTTT 1001
Query 1314 AAAGGATC 1321
|||||||
Sbjct 1002 TAAGGATC 1009
> Ahg473308 jgi|Araly1|473308|fgenesh2_kg.1__3262__AT1G30780.1
Length=1380
Score = 134 bits (72), Expect = 2e-30
Identities = 130/156 (83%), Gaps = 12/156 (8%)
Strand=Plus/Plus
Query 152 AAGACACAAACCCTAGTAAGTTAGAGTTAGATTCGCTGCCTCTTGACCTAAAGATGGCGA 211
|||||||||||||||| | ||| |||||||||| |||||||| ||||||||||| |
Sbjct 593 AAGACACAAACCCTAG--CG--AGA--TAGATTCGCTCCCTCTTGATCTAAAGATGGCTA 646
Query 212 TACTGACTAGAATCCCTGCCAAGTCTCTTATGAAGT-TGC-GATGCGTGTC-AAAGATGT 268
|||| |||||| | |||||||||||||||| ||| | | | | ||| || ||| ||||
Sbjct 647 TACTTACTAGATTGCCTGCCAAGTCTCTTACGAA-TCT-CAAACACGTCTCTAAA-ATGT 703
Query 269 GGTCTTCCATCATCCGAAGCCGAGGTTTCATTGATT 304
||||||||||||||||||||||||| ||||| ||||
Sbjct 704 GGTCTTCCATCATCCGAAGCCGAGGATTCATCGATT 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5