BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32690.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922355 jgi|Araly1|922355|scaffold_103636.1 870 0.0
> Ahg922355 jgi|Araly1|922355|scaffold_103636.1
Length=641
Score = 870 bits (471), Expect = 0.0
Identities = 599/657 (91%), Gaps = 23/657 (4%)
Strand=Plus/Plus
Query 3 TTCTCTGAATCTTCAAAACGCAAAAACATGGACGAAGATGGTTTTTCACAATGTTCAAAA 62
||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTCTGAA---TCAAATCGCGAAAACATGGACGAAGATGGTTTTTCACAATGTTCAAAA 57
Query 63 CACTTTTCAAAACGCGGTTATTTTAGCGGTGGGGGCGTTTGTCCATTTTGTCTCCACGAA 122
||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 58 CACTTCTCGAAACGCGGTTATTTTAGCGGCGGAGGCGTTTGTCCATTTTGTCTCCACGAA 117
Query 123 CGTCTCTCTTCTCTTTGTCCAGATTGTGCTCACGATCTTCCTTGTTCGTGTAGCTCACGC 182
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 118 CGTCTCTCTTCTCTTTGTCCAGATTGTGCTCACGATCTGCCTTGTTCGTGTAGCTCACGC 177
Query 183 GCCGCCGTAtctttctctccttcgtcttcttcgtcttcctcgtcgttctctatcttcgCC 242
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 178 GCCGCCGTATCTTTCTCTCCGTCGTCTTCTTCGTCTTCCTCATCGTTCTCTATCTTCGCC 237
Query 243 GGAGATATCAGTTTTAATATATCCGGCGTTGGATCGGTGGGCCGAGTCGCGAGTTTGATT 302
|||||| | ||||||| | | ||||| |||||||||||||| |||||||| |||||||||
Sbjct 238 GGAGATGTTAGTTTTACTTTCTCCGGGGTTGGATCGGTGGGACGAGTCGCCAGTTTGATT 297
Query 303 GAATGTGAACCGGCGTTTCGGAGATCGAAATCTATGGCGATCCCGATTAAACCGGATTCG 362
||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct 298 GAATGCGAACCGGCGTTTAGGAGATCGAAATCTATGGCGGTTCCGATTAAACCGGATTCG 357
Query 363 GTTATTGATTCCGGTTTGGATCATGGTAGGAGTAAGAAAACGTCGTCGTTTTGGAGAATT 422
||||||||||||||| | || || |||||||||||||||||||||||| ||
Sbjct 358 GTTATTGATTCCGGT----A----GG-AG---TAAGAAAACGTCGTCGTTTTGGAGGATG 405
Query 423 TTTATGGGAAACAGAGGAGATACTAAACCGGCTATTATGAAGAAATCAAGATCCGTTGCG 482
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||
Sbjct 406 TTTATGGGAAACAGAGGAGATACTAAACCGGCGATTATGAGGAAATCAAGATCCATAGCT 465
Query 483 GTCGCCGGAGAATTTGGATTTTCTCCGGTTCCGGTTCCGG-CGA--C--CGGGAA-GGGT 536
||||||||||||| ||||||||||||||||||||||||| || | |||||| ||||
Sbjct 466 GTCGCCGGAGAATCAGGATTTTCTCCGGTTCCGGTTCCGGTCGCGGCGACGGGAAAGGGT 525
Query 537 AAAGGCTGGAATTTTCCGAGTCCGATCAAGGTTTTCCGGCAATCTCGAGTCTCGAAGATG 596
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 526 AAAGGTTGGAATTTTCCGAGTCCGATTAAGGTTTTCCGGCAATCAAGAGTCTCGAAGATG 585
Query 597 ATATTTCAACAACGGTCTCCATTGTATAGAGGTTGAGATTATTAtttttttGTTAAG 653
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 586 ATATTTCAACAACGGTCTCCATTGTATAGAGGTTGAGATTATTATTTTT--GTTAAG 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5