BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G32710.1

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913089 jgi|Araly1|913089|Al_scaffold_0001_3343                    409    9e-114


> Ahg913089 jgi|Araly1|913089|Al_scaffold_0001_3343
Length=456

 Score =  409 bits (221),  Expect = 9e-114
 Identities = 357/418 (85%), Gaps = 28/418 (7%)
 Strand=Plus/Plus

Query  1    ATGTCATCGGCGCAAATGGATCCACACGACAAGATGAGATCGCGTGACATAAGTAAAGTC  60
            ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  1    ATGTCGTCAGCGCAAATGGATCCACACGACAAGATGAGATCGCGCGACATAAGTAAAGTT  60

Query  61   GCGAGAGGCCAGCAAGCACCAAGACCAGCTCACACTCCCGGTACGGTGTCACCCCCACCG  120
            ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct  61   GCGAGAGGCCAGCAAGCGCCAAGACCAGCTCATACTCCCGGTACAGTGTCACCGCCACCG  120

Query  121  GAAAATGAGGCAACGTTTCGAGCAAAGAGAGGAGAT-A--GTGGA-AGAG---AGACG-G  172
             |||| ||||||||||||||||| |||||||||||  |  | ||| ||||   ||| | |
Sbjct  121  CAAAACGAGGCAACGTTTCGAGCGAAGAGAGGAGAGGACAGCGGAGAGAGCGGAGAAGAG  180

Query  173  ATGC---CG-CGGTGGAAGAACGTTTTCCAGTGACTAATGAAACGCGACATTGTTTCAAT  228
             ||    |  | |||||| |||| ||||| || |||||||||||||||||||||||||||
Sbjct  181  GTGGATTCAACTGTGGAAAAACGGTTTCCGGTAACTAATGAAACGCGACATTGTTTCAAT  240

Query  229  CGGTTCATGCAATACCATAAGTGTATTGAGAAAAATGGAAGAGATGCGA-ATGATTGCAA  287
            ||||||||||||||| |||| |||||||||||||||||||||||||| | ||||||||||
Sbjct  241  CGGTTCATGCAATACAATAAATGTATTGAGAAAAATGGAAGAGATGC-ATATGATTGCAA  299

Query  288  CAACTTGAGAGATTACGTACGTTCAATTTGTCCCGAAGAATTGGTGAGCAAAATTTGGTT  347
            ||||||||||||||| || |||||||| |||||| || |   |   |      |||||||
Sbjct  300  CAACTTGAGAGATTATGTGCGTTCAATGTGTCCC-AA-A---G---A------TTTGGTT  345

Query  348  GAAAAGTGGGAGGAACAAAGAAAGTCAGGGACATTACCAGCGTCAATATGAAGATTAG  405
            || |||||||||||||| |||||||| |||||||| ||| |||||||| |||||||||
Sbjct  346  GACAAGTGGGAGGAACAGAGAAAGTCTGGGACATTGCCATCGTCAATACGAAGATTAG  403



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14537279409


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5