BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32730.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473458 jgi|Araly1|473458|fgenesh2_kg.1__3412__AT1G32730.1 1620 0.0
> Ahg473458 jgi|Araly1|473458|fgenesh2_kg.1__3412__AT1G32730.1
Length=1287
Score = 1620 bits (877), Expect = 0.0
Identities = 1143/1264 (90%), Gaps = 47/1264 (4%)
Strand=Plus/Plus
Query 14 GAGAGCACTTCGCAAAATCAGAGCGACaaaaaaaaataaaaaCCAATCCTTTCGATTCCA 73
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1 GAGAGCACTTCGCAAAATCAGAGCGAC-AAAAAAATTAAAAACCAATCCTTTCGATTCCA 59
Query 74 AATTTTTTGTTACTCACTCGCACGAGTTTTATTTGGTCGTTAG-TTATCTCTTTCGTTGA 132
|| ||||| | | ||| | |||||||||||| || ||||||||| | |
Sbjct 60 AA-ATTTTG-T--T-ACT----C--------TTTGGTCGTTAGCTT-TCTCTTTCG-TCA 100
Query 133 ATAACGGTTTTAATTTAAACCGTTACTTTTTATCAATGGCGACTTCGTCACCGTCTCTGA 192
||||||||||||||||| ||||||| | | || | | | ||||||||||||||||
Sbjct 101 ATAACGGTTTTAATTTAGACCGTTAATGAAGAAGAAAGATGGCGTCGTCACCGTCTCTGA 160
Query 193 GTAACAATGGTCTTTCCTCCGTCGTCACGCCTCCCAAAACTCTCCGTGGTCTCAATAAGC 252
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 161 GTAACAATGGTCTTTCCTCCGTCGTCACGCCTCCTAAGACTCTCCGTGGTCTCAATAAGC 220
Query 253 CTAAGTGTATTCAATGCGGCAATGTAGCTCGCTCCAGGTG-CCCTTTTCAATCTTGTAAG 311
|||||||||||||||||||||| || |||||||||||||| || |||| | |||||||||
Sbjct 221 CTAAGTGTATTCAATGCGGCAACGTCGCTCGCTCCAGGTGTCCATTTT-ATTCTTGTAAG 279
Query 312 GGTTGTTGTTCAAGAGCAGAGAATCCC-TGCCCGATTCACGTTCTTAAAGTAGCTTCAAC 370
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 280 GGTTGTTGTTCAAGAGCAGAGAA-CCCTTGCCCGATTCACGTTCTTAAAGTAGCTTCAAC 338
Query 371 GTCTGGTGAGAAGACGCAGGCGCCAAGTACTCCATCTTCAGAGCAGAAAGCAACCGAGGG 430
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 339 TTCTGGTGAGAAGACGCAGGCGCCAAGTACTCCATCATCAGAGCAGAAAGCATCCGAGGG 398
Query 431 CACTCCCGGGAGTACCACTAGAGTTTCGTCAATCCGGCAACTTTCTAGCAACTTTGCTCA 490
|||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 399 CACTCCTGGGAGTACAACTAGAGTTTCGTCCATCCGCCAACTTTCTAGCAACTTTGCTCA 458
Query 491 GTTTAATAACCTGAATGCTTCTTCCCGCCAGAGAAAACCTTTGACGATAAAGGATGCTCA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 459 GTTTAATAACCTGAATGCTTCTTCCCGCCAGAGAAAACCTTTGACGATAAAGGATGCACA 518
Query 551 AGCTTTAAACGAGTGGCGGTTTACAAAGCTAAAAGAGTACAGAGACAGAAACATTGAAGT 610
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 519 AGCTTTAAACGAGTGGCGGTTTACAAAGCTAAAAGAGTTCAGAGACCGAAACATTGAAGT 578
Query 611 AGAAAATGAAGCTTTTGATCGGTACATGAGTAATGTGAATTTACTCGAAGAAGCATTTTC 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 AGAAAATGAAGCTTTTGATCGGTACATGAGTAATGTGAATTTACTCGAAGAAGCATTTTC 638
Query 671 ATTTACATCTGTTCCTGATGAAGAGAGT-CATGGAACAGCAGCTCCTGAGCAAAACAAAG 729
||||||||||||||||||||||||| || |||||| |||||||| |||||| |||||| |
Sbjct 639 ATTTACATCTGTTCCTGATGAAGAG-GTTCATGGAGCAGCAGCTTCTGAGCTAAACAACG 697
Query 730 AGGAAAATATTGTTTCAGAGCTTAAACTGAGGCTGAGATCGAACTCTGCAAGAACAGAGA 789
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 698 AGGAAAGTATTGTTTCAGAGCTTAAACTGAGGCTGAGATCGAACTCCGCAAGAACAGAGA 757
Query 790 GCTTTAAGAAGCGGATCGCGGAGACAGTCAAAGCCGGTTTGGTGAAGCTTAAGAGACTGG 849
|||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||
Sbjct 758 GCTTCAAGAAGAGGATCGCAGAGACTGTCAAAGCCGGTTTGGTGAAGCTTAAGAGACCGG 817
Query 850 ATTTAGGCAGTTCTTCAGATGATCAAGATGATATCAAAAGGCGGGTCAAAAGAAAG-AAA 908
|| |||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||
Sbjct 818 ATATAGGCAGTTCTTCAGATGATCAAGATGAAATCAAAAGGCGGATCAAAAGAA-GTAAA 876
Query 909 TGGGAAGAGAAAGGTTCAGCTTTGAATGAAATAATCGATAAACTGAACAAAGCAAGAACC 968
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 877 TGGGAAGAGAAAGGTTCAGCTTTGAATGATATAATCGATAAACTGAACAAAGCAAGAACC 936
Query 969 GAAGAGGATCTCAAATCTTGCTTAGAGATGAAATCAAAGCTCTGTGGTCAAGTTTCTCCC 1028
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 937 GAAGAGGATCTCAAATCTTGCTTAGAGATGAAATCAAAGCTCTGTGGTCATGTTTCTTCC 996
Query 1029 ACTGCTGCTTCCGAGAAGAACAAGATCTTTCCGGGTG-TAGTCCGAAAAGTTGAGATGAG 1087
|||||| |||||||| |||||||| | ||||| | | | |||||| |||||||||||||
Sbjct 997 ACTGCTACTTCCGAGGAGAACAAGGTTTTTCCTGATACT-GTCCGAGAAGTTGAGATGAG 1055
Query 1088 TGAAGAAGCACTTCAAAAAATCGCTGAGAATCTCCAATCTTTTGACAAAGTTGGAA-TGT 1146
||||| |||||||||| |||||| |||| ||||||||||||||||| ||| |||| |||
Sbjct 1056 CGAAGATGCACTTCAAAGAATCGCGGAGAGTCTCCAATCTTTTGACAGAGT-GGAAATGT 1114
Query 1147 TGTGAAGTCGAGAACATCCTGTGGATGAACTGAAAAGTTTGAGTGGCAAGAAAATTTCTA 1206
||||||||||||||||||| | || | |||| ||||| |||||| || |
Sbjct 1115 TGTGAAGTCGAGAACATCC-----A--AA--G-----TTTGTGTGGCGAGAAAAACTCAA 1160
Query 1207 GATCCTTCGTGACCACGGTATTGTACAATGATCAAACATCCCTCAAAACTGATCCTGAAG 1266
|||| || |||| | |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1161 GATCTTTTGTGATCGCGGTATTGTACAATGATCAACCATCCCTCAAAACTGATCTTGAAG 1220
Query 1267 ACTC 1270
||||
Sbjct 1221 ACTC 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5