BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32740.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336359 jgi|Araly1|336359|fgenesh1_pg.C_scaffold_1002924 1182 0.0
> Ahg336359 jgi|Araly1|336359|fgenesh1_pg.C_scaffold_1002924
Length=942
Score = 1182 bits (640), Expect = 0.0
Identities = 863/963 (90%), Gaps = 45/963 (5%)
Strand=Plus/Plus
Query 7 ATGGCAGTTCAAGCTCAACACCATTCCTCCAATCTCCTCTTCCTCAATAAAAGAAACGGG 66
|||||| |||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 1 ATGGCACTTCAAGCTCAACACCATTCCTCTAATCTCATCTTATTCAATAAAAGAAACGGG 60
Query 67 AAAGAGAAAGAACATAGTAATTTTACATTACAATCACAAGCAGCTGGAGATTTTCTTGAT 126
|||||||||| | | | |||||||||||||||||||| | ||||||||||| |||||||
Sbjct 61 AAAGAGAAAG-A-AGA-TAATTTTACATTACAATCAC-A--AGCTGGAGATTATCTTGAT 114
Query 127 CAAACCAATATGTTATTCAACAATGGAAGTTCTAATCAGAGAAAAAGAAGAAGAGAAACG 186
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 115 CAAACCAATATGTTATTCAACAATGGAAGTTCGAATCAGAGAAAAAGAAGAAGAGAAACG 174
Query 187 AACAATCATCAGTTATTACCTA-TGCAGTCTCATCAGTTTCCTCAAGTTATAGACTTATC 245
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 175 AACAATCATCAGTTCTTACC-ACTGCAGTCTCATCAGTTTCCTCAAGTTATAGACTTATC 233
Query 246 TCTATTACACAACTACAATCATCCACCGTCGAATATGGTTCATACAGGACTCCGATTATT 305
| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 234 TTTATTACATAACCACAATCATCCACCGTCGAATATGGTTCATACAGGACTCCGGTTATC 293
Query 306 TTCCGGCGAAGATCAGGCACAAAAGATTAG---TC-----A---------CC---T-GTC 344
||||||||||||||||||||||||||||| || | || | |||
Sbjct 294 ATCCGGCGAAGATCAGGCACAAAAGATTAGTCATCAGATAAGTTTTGTCTCCGATTCGTC 353
Query 345 TGAAGATGTTTTTGCTGCACATATCAATAGGCAAAGCGAAGAACTTGATGAGTTTCTTCA 404
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 354 TGAAGATGTTTTTGCTGCACATATCAATAGGCAAAGCAAAGAACTTGATGAATTTCTTCA 413
Query 405 TGCCCAGGCGGAGGAGCTACGGCGTACATTAGCGGAGAAGAGGAAGATGCACTATAAAGC 464
|||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 414 TGCCCAGGCGGAGGAGCTACGGCGCACATTAGTGGAGAAGAGGAAGAGGCACTATAAAGC 473
Query 465 GCTTCTTGGTGCCGTGGAAGAGTCGTTGGTTCGTAAGCTGAGGGAGAAAGAGGTAGAGAT 524
||||||||||| ||||| ||| |||||||||||||||||||||||||||| | ||||||
Sbjct 474 GCTTCTTGGTGTTGTGGAGGAGCCGTTGGTTCGTAAGCTGAGGGAGAAAGAAGCAGAGAT 533
Query 525 AGAGAGAGCCACGCGCCGTCACAATGAGCTGGTGGCACGTGACTCGCAGCTGAGAGCGGA 584
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 534 AGAGAGAGCCACGCGCCGTCACAATGACCTGGTGGCGCGTGACTCACAGCTGAGAGCGGA 593
Query 585 GGTGCAAGTATGGCAAGAGAGAGCTAAAGCGCACGAAGACGCCGCCGCGTCGCTGCAGTC 644
| ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct 594 GACGCAAGAATGGCAAGAGAGAGCTAAGGCGCACGAAGCCGCCGCCGCGTCGCTGCAGGC 653
Query 645 TCAGCTCCAGCAAGCCGTTAACCAATGCGCCGGTGGATGTGTATCGGCGCAGGATAGTAG 704
|||||||||||| || ||||||||||||| | | | ||||| ||||||||||||||||
Sbjct 654 TCAGCTCCAGCAGGCAGTTAACCAATGCG--G-TCG-TGTGT--CGGCGCAGGATAGTAG 707
Query 705 AGCGGCGGAGGAAGGGCTATTATGCACCACAATCAGCGGAGTGGATGACGCCGAGTCGGT 764
|||||||||||||| | ||| || | |||||||||| |||| ||||||||||||||
Sbjct 708 AGCGGCGGAGGAAGA-C-ATT--GCGG-A-AATCAGCGGATTGGACGACGCCGAGTCGGT 761
Query 765 GTACGTGGATCCGGAGAG-AGTAA-AGCGGCCGAATTGCAAAGCTTGCCGGGAAAGAGAG 822
|||||||||||||||||| | | | | ||||||| ||||||||||||||||||||| ||
Sbjct 762 GTACGTGGATCCGGAGAGGA-TGAGA-CGGCCGAGTTGCAAAGCTTGCCGGGAAAGGGAA 819
Query 823 GCAACGGTGGTTGTGTTGCCGTGTCGGCATCTGAGCATCTGCCCGGGATGTGACCGGACA 882
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 820 GCGACGGTGGTTGTGTTGCCATGTCGGCATCTGAGCATATGCCCGGGATGTGACCGGACA 879
Query 883 GCTTTAGCTTGCCCGTTGTGTCTCACGTTGCGGAATTCAAGTGTTGAAGCTATCTTTTGC 942
|||||||| |||||||| |||||||||||||| ||||||||||||||||||||| || ||
Sbjct 880 GCTTTAGCGTGCCCGTTCTGTCTCACGTTGCGAAATTCAAGTGTTGAAGCTATCCTTGGC 939
Query 943 TAA 945
|||
Sbjct 940 TAA 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5