BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32760.1
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473461 jgi|Araly1|473461|fgenesh2_kg.1__3415__AT1G32760.1 1565 0.0
> Ahg473461 jgi|Araly1|473461|fgenesh2_kg.1__3415__AT1G32760.1
Length=1039
Score = 1565 bits (847), Expect = 0.0
Identities = 989/1055 (94%), Gaps = 20/1055 (2%)
Strand=Plus/Plus
Query 21 AATCCTCGAAATCTCCGGCGATGGGTGGTTGCGTCTCCTCCAACCTCCTTACTCCGACCG 80
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AATCCTCGAAATCTCCGGCGATGGGTGGTTGCGTCTCCTCCAACCTCCTTAATCCGACCG 60
Query 81 ATGACAGCAGCTTCTCTCACCTCACCAGCTCCTCCTTAAGCCAACATTTCGTCAAGCTAA 140
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ATGACAACAACTTCTCTCACCTCACCAGCTCCTCCTTAAGCCACCATTTCGTCAAGCTAA 120
Query 141 CTTCCACCACTTACGGtcttctcaatctcgactcttcttcaccttctcctccgtctcctt 200
||||||||||||||||||||||||||||||| | ||||||||| |||| ||| |||| |
Sbjct 121 CTTCCACCACTTACGGTCTTCTCAATCTCGA--C-TCTTCACCTCCTCCGCCGCCTCC-T 176
Query 201 cctcctcctcctccGCCAAATCCGTTATCA-CGCCAATGACTCCGCCTGAGAGATTCACT 259
||||||||| |||| | |||| ||| | |||| ||||||||||||||||||||||||
Sbjct 177 --TCCTCCTCCGCCGCTACCTCCGCTAT-ATCGCCGATGACTCCGCCTGAGAGATTCACT 233
Query 260 ATCAACGGTAAGGAGGCGGCGATGATGATGGTTAAGTCTGAGCCGACGACGGAGGTTATT 319
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 234 ATCAACGGTAAGGAGGCGGC---GATGATGGTTAAGTCTGAGCCGACGACGGAGGTTATT 290
Query 320 AACTTCTGGGAGCTAATGTCAGGTTTAGACGGCGATACTTGTCGATTCTCTCCGATTCCG 379
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 291 AACTTCTGGGAGCTAATGTCAGGTCTCGACGGCGATACTTGTCGATTCTCTCCGATTCCG 350
Query 380 GTGAAATGTAATGGATTTTCCGGCGGATTAAAGAAAGAGAACTCCGATCCTAATTTGAAA 439
||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 351 GTGAAATGTGATGTCTTTTCCGGCGGATTAAACAAAGAGAACTCCGATCCTAATTTGATA 410
Query 440 AACCCTAACGATTACGAGGTTTTGAAACCGTTAGATCCGAAATTAGCGGAGGAATCTGAG 499
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 411 AACCCTAACGATTACGAGGTTTTGAAACCGTTAGATCCGAAACTAGCGGAGGAATCTGAG 470
Query 500 AGGTTATGTGACGGCGGAGAGAATCGCGTTGTGATTTATACGACGTCGTTGCGCGGTGTT 559
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 471 AAATTGTGTGACGGCGGAGAGAATCGCGTTGTGATTTACACGACGTCGTTGCGCGGTGTG 530
Query 560 CGACGGACGTTTGAGGCGTGTAACGCCGTGAGAGCTGCGATTGAGAGTTTTGGTGTAGTG 619
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 531 CGACGGACGTTTGAGGCGTGTAACGCCGTTAGAGCTGCGATTGAGAGTTTTGGTGTAGTG 590
Query 620 GTTTGTGAGAGAGATGTGTCAATGGATAGAGGATTTAGAGAAGAGTTATCCAATCTAATG 679
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 591 ATTTGTGAGAGAGATGTGTCAATGGATAGAGGATTTAGAGAAGAGTTATCGAATCTCATG 650
Query 680 GCGGTAGAATCGACGGCGGCGGTGTTGCCGCCTCGGGTTTTTGTGAAGGGGAAGTACATT 739
|||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 651 GCGGTAGATTCGA---CAGCGGTGTTGCCGCCTCGGGTTTTCGTGAAGGGGAAGTACATT 707
Query 740 GGTGGAGCAGAGGAAGTGATGAGATTGGTGGAAGAAGGATTGCTTGGTGAATTGCTTAAA 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GGTGGAGCAGAGGAAGTGATGAGATTGGTGGAAGAAGGATTGCTTGGTGAATTGCTTAAA 767
Query 800 GAGATTCCGAGGAAGAAAGATCGGTGTGGCGGCGGTTGCGGTGGTTGCGGCGGATTAGCG 859
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 768 GGGATTCCGAAGAAGAAAGATCGGTGTGGCGGCGGTTGCGATGGTTGCGGCGGATTAGCG 827
Query 860 TTTTTGCCGTGTTCGGGTTGTAATGGAAGCTGTAAAGTGGTGGAAGGATGGGGGAATGAT 919
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 828 TTTTTGCCGTGTTCGGGTTGTAATGGAAGCTGTAAAGTGGTGGAAGGATGGGGTAATGAG 887
Query 920 GCAGTGGTGGTGAAGTGTAAGGAGTGTAATGAGAATGGTCTTGTTCGTTGTCCAATATGC 979
|| || ||||||||||||| || |||||||||||||||||||||||||||||| || |||
Sbjct 888 GCTGTAGTGGTGAAGTGTATGGCGTGTAATGAGAATGGTCTTGTTCGTTGTCCGATTTGC 947
Query 980 AGCTAAATCAACAATACACTAGTAATAATCTCAAATTTGGAATCATATATCTAATACTAC 1039
||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 948 AGCTAAA--A-CAATACACTAGTAATAATCTCGAATTTGGAATCATATATCTAATACTAC 1004
Query 1040 TACTACTA-T-T-AGAGTCTCTCTGTGTCAAGATT 1071
|||||||| | | ||||||| ||||||||||||||
Sbjct 1005 TACTACTACTGTTAGAGTCTATCTGTGTCAAGATT 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40295923269
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5