BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32760.1 Length=1082 Score E Sequences producing significant alignments: (Bits) Value Ahg473461 jgi|Araly1|473461|fgenesh2_kg.1__3415__AT1G32760.1 1565 0.0 > Ahg473461 jgi|Araly1|473461|fgenesh2_kg.1__3415__AT1G32760.1 Length=1039 Score = 1565 bits (847), Expect = 0.0 Identities = 989/1055 (94%), Gaps = 20/1055 (2%) Strand=Plus/Plus Query 21 AATCCTCGAAATCTCCGGCGATGGGTGGTTGCGTCTCCTCCAACCTCCTTACTCCGACCG 80 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 AATCCTCGAAATCTCCGGCGATGGGTGGTTGCGTCTCCTCCAACCTCCTTAATCCGACCG 60 Query 81 ATGACAGCAGCTTCTCTCACCTCACCAGCTCCTCCTTAAGCCAACATTTCGTCAAGCTAA 140 |||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 ATGACAACAACTTCTCTCACCTCACCAGCTCCTCCTTAAGCCACCATTTCGTCAAGCTAA 120 Query 141 CTTCCACCACTTACGGtcttctcaatctcgactcttcttcaccttctcctccgtctcctt 200 ||||||||||||||||||||||||||||||| | ||||||||| |||| ||| |||| | Sbjct 121 CTTCCACCACTTACGGTCTTCTCAATCTCGA--C-TCTTCACCTCCTCCGCCGCCTCC-T 176 Query 201 cctcctcctcctccGCCAAATCCGTTATCA-CGCCAATGACTCCGCCTGAGAGATTCACT 259 ||||||||| |||| | |||| ||| | |||| |||||||||||||||||||||||| Sbjct 177 --TCCTCCTCCGCCGCTACCTCCGCTAT-ATCGCCGATGACTCCGCCTGAGAGATTCACT 233 Query 260 ATCAACGGTAAGGAGGCGGCGATGATGATGGTTAAGTCTGAGCCGACGACGGAGGTTATT 319 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 234 ATCAACGGTAAGGAGGCGGC---GATGATGGTTAAGTCTGAGCCGACGACGGAGGTTATT 290 Query 320 AACTTCTGGGAGCTAATGTCAGGTTTAGACGGCGATACTTGTCGATTCTCTCCGATTCCG 379 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 291 AACTTCTGGGAGCTAATGTCAGGTCTCGACGGCGATACTTGTCGATTCTCTCCGATTCCG 350 Query 380 GTGAAATGTAATGGATTTTCCGGCGGATTAAAGAAAGAGAACTCCGATCCTAATTTGAAA 439 ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 351 GTGAAATGTGATGTCTTTTCCGGCGGATTAAACAAAGAGAACTCCGATCCTAATTTGATA 410 Query 440 AACCCTAACGATTACGAGGTTTTGAAACCGTTAGATCCGAAATTAGCGGAGGAATCTGAG 499 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 411 AACCCTAACGATTACGAGGTTTTGAAACCGTTAGATCCGAAACTAGCGGAGGAATCTGAG 470 Query 500 AGGTTATGTGACGGCGGAGAGAATCGCGTTGTGATTTATACGACGTCGTTGCGCGGTGTT 559 | || |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 471 AAATTGTGTGACGGCGGAGAGAATCGCGTTGTGATTTACACGACGTCGTTGCGCGGTGTG 530 Query 560 CGACGGACGTTTGAGGCGTGTAACGCCGTGAGAGCTGCGATTGAGAGTTTTGGTGTAGTG 619 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 531 CGACGGACGTTTGAGGCGTGTAACGCCGTTAGAGCTGCGATTGAGAGTTTTGGTGTAGTG 590 Query 620 GTTTGTGAGAGAGATGTGTCAATGGATAGAGGATTTAGAGAAGAGTTATCCAATCTAATG 679 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 591 ATTTGTGAGAGAGATGTGTCAATGGATAGAGGATTTAGAGAAGAGTTATCGAATCTCATG 650 Query 680 GCGGTAGAATCGACGGCGGCGGTGTTGCCGCCTCGGGTTTTTGTGAAGGGGAAGTACATT 739 |||||||| |||| | ||||||||||||||||||||||| |||||||||||||||||| Sbjct 651 GCGGTAGATTCGA---CAGCGGTGTTGCCGCCTCGGGTTTTCGTGAAGGGGAAGTACATT 707 Query 740 GGTGGAGCAGAGGAAGTGATGAGATTGGTGGAAGAAGGATTGCTTGGTGAATTGCTTAAA 799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 GGTGGAGCAGAGGAAGTGATGAGATTGGTGGAAGAAGGATTGCTTGGTGAATTGCTTAAA 767 Query 800 GAGATTCCGAGGAAGAAAGATCGGTGTGGCGGCGGTTGCGGTGGTTGCGGCGGATTAGCG 859 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 768 GGGATTCCGAAGAAGAAAGATCGGTGTGGCGGCGGTTGCGATGGTTGCGGCGGATTAGCG 827 Query 860 TTTTTGCCGTGTTCGGGTTGTAATGGAAGCTGTAAAGTGGTGGAAGGATGGGGGAATGAT 919 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 828 TTTTTGCCGTGTTCGGGTTGTAATGGAAGCTGTAAAGTGGTGGAAGGATGGGGTAATGAG 887 Query 920 GCAGTGGTGGTGAAGTGTAAGGAGTGTAATGAGAATGGTCTTGTTCGTTGTCCAATATGC 979 || || ||||||||||||| || |||||||||||||||||||||||||||||| || ||| Sbjct 888 GCTGTAGTGGTGAAGTGTATGGCGTGTAATGAGAATGGTCTTGTTCGTTGTCCGATTTGC 947 Query 980 AGCTAAATCAACAATACACTAGTAATAATCTCAAATTTGGAATCATATATCTAATACTAC 1039 ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 948 AGCTAAA--A-CAATACACTAGTAATAATCTCGAATTTGGAATCATATATCTAATACTAC 1004 Query 1040 TACTACTA-T-T-AGAGTCTCTCTGTGTCAAGATT 1071 |||||||| | | ||||||| |||||||||||||| Sbjct 1005 TACTACTACTGTTAGAGTCTATCTGTGTCAAGATT 1039 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40295923269 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5