BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32763.1
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313838 jgi|Araly1|313838|fgenesh1_pm.C_scaffold_1002618 355 7e-98
Ahg317317 jgi|Araly1|317317|fgenesh1_pm.C_scaffold_3000333 294 2e-79
> Ahg313838 jgi|Araly1|313838|fgenesh1_pm.C_scaffold_1002618
Length=246
Score = 355 bits (192), Expect = 7e-98
Identities = 228/246 (93%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 1 ATGGGTATTACAAAGACTTCAGTGACTTTTTTATTCTTATTAATATTGGCTGCTTTTGTA 60
||||| || ||||||| || ||||||||||||||||||| |||||||||||||| ||||
Sbjct 1 ATGGGCATCACAAAGAATTTAGTGACTTTTTTATTCTTAATAATATTGGCTGCTCTTGTG 60
Query 61 TCCAATTACAACGTATTGGCTTCAGAGATCAAACCTACAGGGAGAATTGATGATCAATGC 120
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 TCCAATTACAATGTATTGGCTTCAGAGATCAAACCTACAGGGAGAATTCATGATCAATGC 120
Query 121 AAGCAGATGTGTTCGGCAACGTACGGGGACGGTAAATGTGCCTCGGACTGTAGGAAGGCT 180
||||||||||||||||||||||||||| | ||||||||| || |||||||||||||||||
Sbjct 121 AAGCAGATGTGTTCGGCAACGTACGGGAATGGTAAATGTTCCGCGGACTGTAGGAAGGCT 180
Query 181 GGTTTCTCATCCGGACGTTGTCTAACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCACC 240
|| ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 GGGTTCTCATCCGGACAATGTCTTACCTCTTCTCCTTTCGGAAATAAATGTTGTTGCACC 240
Query 241 AAGTGA 246
||||||
Sbjct 241 AAGTGA 246
> Ahg317317 jgi|Araly1|317317|fgenesh1_pm.C_scaffold_3000333
Length=243
Score = 294 bits (159), Expect = 2e-79
Identities = 210/234 (90%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 10 ACAAAGACTTCAGTGACTTTTTTATTCTTATTAATATTGGCTGCTTTTG-TATCCAATTA 68
|||||||||||||||||| ||||| ||||| ||||| |||||| ||| | | || ||||
Sbjct 10 ACAAAGACTTCAGTGACTCTTTTACTCTTAATAATAATGGCTG-TTTCGTTGTCTAATTT 68
Query 69 CAACGTATTGGCTTCAGAGATCAAACCTACAGGGAGAATTGATGATCAATGCAAGCAGAT 128
|| ||| |||||||| || |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 69 CAGCGTCTTGGCTTCGGACATCAAACCTACAGGAAGAATTGATAATCAATGCAAGCAGAT 128
Query 129 GTGTTC-GGCAACG-TACGGGGACGGTAAATGTGCCTCGGACTGTAGGAAGGCTGGTTTC 186
|||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 129 GTGTTCGGGC--GGTTACGGGGACGGTAAATGTGCCGCGGACTGTAGGAAGGCTGGTTTC 186
Query 187 TCATCCGGACGTTGTCTAACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCACC 240
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 187 TCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCACC 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8515982203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5