BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32770.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313839 jgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619 1504 0.0
> Ahg313839 jgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619
Length=1092
Score = 1504 bits (814), Expect = 0.0
Identities = 1008/1098 (92%), Gaps = 27/1098 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGATAATAAGGTCAATCTTTCGATTAATGGACAATCAAAAGTGCCTCCAGGTTTC 60
||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGATAATAAGGTAAATCTGTCTATTAATGGACAATCAAAAGTGCCTCCAGGTTTC 60
Query 61 AGATTCCATCCCACCGAAGAAGAACTTCTCCATTACTATCTCCGTAAGAAAGTTAACTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATTCCATCCCACCGAAGAAGAACTTCTCCATTACTATCTCCGTAAGAAAGTTAACTCT 120
Query 121 CAAAAGATCGATCTTGATGTCATTCGTGAAGTTGATCTAAACAAGCTTGAGCCTTGGGAT 180
|| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 121 CAGAAGATCGATCTTGATGTCATTCGTGAAATTGATCTCAACAAGCTCGAGCCTTGGGAT 180
Query 181 ATTCAAGAGGAATGTAGAATCGGTTCAACGCCACAAAACGACTGGTACTTCTTCAGCCAC 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ATTCAAGAGGAATGTAGAATCGGTTCGACGCCACAAAACGACTGGTACTTCTTCAGCCAC 240
Query 241 AAGGACAAGAAGTATCCAACCGGGACCAGGACGAACCGGGCAACAGTCGCTGGATTCTGG 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 241 AAGGACAAGAAGTATCCAACCGGGACCAGGACAAACCGGGCAACAGTCGCTGGATTTTGG 300
Query 301 AAAGCTACCGGACGTGACAAAATCATCTGCAGTTGTGTCCGGAGAATTGGACTGAGGAAG 360
|||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||||
Sbjct 301 AAAGCTACCGGACGTGACAAGATCATCTGCAGTTGCATCCGGAGGATTGGATTGAGGAAG 360
Query 361 ACACTCGTGTTCTACAAAGGAAGAGCTCCTCACGGTCAGAAATCCGACTGGATCATGCAT 420
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 ACACTCGTATTCTACAAAGGAAGAGCTCCTCACGGTCAGAAATCCGATTGGATCATGCAT 420
Query 421 GAGTATCGCCTCGACGATACTCCAATGTCTAATGGCTATGCTGATGTTGTTACAGAAGAT 480
|| |||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||
Sbjct 421 GAATATCGCCTCGACGATACTCCAATGTCGAATGGCTATTCTGATGTTGTAACCGAAGAT 480
Query 481 CCAATGAGCTATAACGAAGAAGGTTGGGTGGTATGTCGAGTGTTCAGGAAGAAGAACTAT 540
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCAATGAACTACAACGAAGAAGGTTGGGTGGTATGTCGAGTGTTCAGGAAGAAGAACTAT 540
Query 541 CAAAAGATTGACGATTGTCCTAAAATCACTCTATCTTCTTTACCTGATGACACGGAGGAA 600
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 541 CAAAAGATCGACGATTGTCCTAAAATCACTCTATCTTCTTCAATTGATGACACGGAGGAA 600
Query 601 GAGAAGGGGCCCACCTTTCACAACACTCAAAAC-GTTACCGGTTTAGACCATGTTCTTCT 659
|||||| ||||||||| |||||||||||||||| | |||| |||||| |||||||||||
Sbjct 601 GAGAAGAGGCCCACCTGTCACAACACTCAAAACAGC-ACCGTTTTAGATCATGTTCTTCT 659
Query 660 CTACATGGACCGTACCGGTTCTAACATTTGCATGCCCGAGAGCCAAACAACGAC------ 713
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 CTACATGGACCGTACCGGTTCTAACATTTGCATGCCCGAGAGGCAAACAACGACCAAAAC 719
Query 714 TCAACATCAAGATGATGTCTTATTCATGCAACTCCCAAGTCTTGAGACACCTAAATCCGA 773
|||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||| ||
Sbjct 720 TCAACATCAAGACGATGTCTTATTCACGCAACTTCCAAGTCTTGAGACACCCAAATCTGA 779
Query 774 GAGCCCGGTCGACCAA-AGTTTCCTGACTCCAAGCAAACTCGATTTCT-CTCCCGTTCAA 831
||||||||||||| || |||||| ||||| ||| | |||| | || || |||| ||||||
Sbjct 780 GAGCCCGGTCGAC-AATAGTTTCATGACTTCAAACCAACTTGGTT-CTTCTCCGGTTCAA 837
Query 832 GAGAAGAT-A-A-CCGAAAGACCGGTTTGCAGCAACTGGGCTAGTCTTGACCGGCTCGTA 888
||||| || | | ||| ||||| |||||||| || |||||||||||||||||||| ||
Sbjct 838 GAGAAAATTATAACCGGCAGACCTGTTTGCAGTAATTGGGCTAGTCTTGACCGGCTTGTG 897
Query 889 GCTTGGCAATTGAACAATGGTCATCATAATCCGTGTCATCGTAAGAGTTTTGATGAAGAA 948
|||||||||||||||||||||| ||| | | |||| |||||||||||||||||||||||
Sbjct 898 GCTTGGCAATTGAACAATGGTCGTCACA--C-GTGTGATCGTAAGAGTTTTGATGAAGAA 954
Query 949 GAAGAAAATGGTGATACTATGATGCAGCGATGGGATCTTCATTGGAATAATGATGATAAT 1008
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GAAGAAATTGGTGATACTATGATGCAGCGATGGGATCTTCATTGGAATAATGATGATAAT 1014
Query 1009 GTTGATCTTTGGAGTAGTTTCACTGAGTCTTCTTCGTCT--TT-------AGACCCACTT 1059
|| ||||| |||||||||||||| ||||||||||||||| || |||||| |||
Sbjct 1015 GTCGATCTCTGGAGTAGTTTCACAGAGTCTTCTTCGTCTCCTTCGTCTTTAGACCCTCTT 1074
Query 1060 CTTCATTTATCTGTATGA 1077
||||||||||||||||||
Sbjct 1075 CTTCATTTATCTGTATGA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5