BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32780.1
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473464 jgi|Araly1|473464|fgenesh2_kg.1__3418__AT1G32780.1 2159 0.0
> Ahg473464 jgi|Araly1|473464|fgenesh2_kg.1__3418__AT1G32780.1
Length=1512
Score = 2159 bits (1169), Expect = 0.0
Identities = 1364/1455 (94%), Gaps = 26/1455 (2%)
Strand=Plus/Plus
Query 126 ATTTGAGATTCGCATTACGATGGTTTATGTAAAGAGATTGGTTATATCAATCTTATCAAA 185
|||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 80 ATTTGAGATTAGCATTATGATGGTTTATGTAAAGAGATTGGTCATATCAATCTTATCAAA 139
Query 186 CCCACCTCTCTCGGGATTATTGACTCGATTTGGATATTTATACATGTGACTATATTTAGA 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GCCACCTCTCTCGGGATTATTGACTCGATTTGGATATTTATACATGTGACTATATTTAGA 199
Query 246 CATACATAGATCTCAGTCCTG--TATATATAGAGCTACATTCATAAAAGAAAGATCTAAC 303
|||| |||||||| | | ||| |||||||||| |||||||||| | ||||| | ||
Sbjct 200 CATATATAGATCTGAATTCTGTATATATATAGATCTACATTCAT---A-AAAGA-C-AA- 252
Query 304 ATAACAAAAGGAAAAAAGCATCAAGAACATGGCGGAGACTCAAGGAAAGGTCATCACTTG 363
|| | || |||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 253 AT--C---------TAA--ATCAAGAAGATGGCAGAGACTCAAGGGAAGGTCATCACTTG 299
Query 364 TAAAGCTGCTGTCGTATGGGGTCCAAAAGTGCCGCTTGTAATTCAAGAAATATGCGTCGA 423
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 300 CAAAGCTGCTGTCGTATGGGGTCCAAAAGAACCGCTTGTAATACAAGAAATATGTGTGGA 359
Query 424 TCCTCCTCAGAAAATGGAAGTCCGTG-TTAAAATTCTTTACTCCTCCATTTGCCACACCG 482
|||||||||||||||||||||||| | | ||||| |||||||| ||||||||||||||||
Sbjct 360 TCCTCCTCAGAAAATGGAAGTCCG-GCTCAAAATCCTTTACTCTTCCATTTGCCACACCG 418
Query 483 ATCTCGGATGTTGGAACGGCACGAACGAAGCTGAACGAGCATTTCCAAGGATTCTTGGCC 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 ATCTCGGATGTTGGAACGGCACGAACGAAGCTGAACGAGCATTTCCAAGGATTCTTGGTC 478
Query 543 ATGAAGCTGTCGGGATTGTAGAGAGTGTTGGAGAAGGAGTAAAAGATGTGAAAGAAGGAG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGAAGCTGTCGGGATTGTAGAGAGTGTTGGAGAAGGAGTAAAAGATGTGAAAGAAGGAG 538
Query 603 ACTACGTGATTCCGACTTTCAATGGAGAATGTGGTGAATGTAAAGTGTGTAAGAGAGAAG 662
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACTATGTGATTCCGACTTTCAATGGAGAATGTGGTGAATGTAAAGTGTGTAAGAGAGAAG 598
Query 663 AAAGTAATCTCTGTGAGCGATATCATGTGGATCCTATGAAGAGGGTGATGGTGAATGATG 722
| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 599 AGAGTAATCTCTGTGAGCGATATCATGTGGATCCTATGAAGAGAGTGATGGTGAGTGATG 658
Query 723 GAGGGACGAGATTCTCAACCACCATAAACAAGGACGGTGGTTCGAGCCAAAGCCAACCTA 782
||| |||||||||||||||||||| | ||||||||||| | || ||||| |||||||| |
Sbjct 659 GAGCGACGAGATTCTCAACCACCACAGACAAGGACGGTCGCTCAAGCCAGAGCCAACCCA 718
Query 783 TATATCACTTCCTTAACACCTCCACGTTCACCGAATACACTGTCTTGGACTCGGCTTGCG 842
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 719 TATATCATTTCCTTAACACCTCCACGTTCACCGAATACACCGTCTTGGACTCGGCTTGTG 778
Query 843 TCGTCAAGATCGATCCTAATTCTCCTCTCAAGCAAATGAGCCTCTTGAGTTGTGGTGTCT 902
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 779 TCGTCAAGATCGATCCTAATGCTCCTCTCAAGCAAATGAGCCTCTTGAGCTGTGGTGTCT 838
Query 903 CAACTGGGGTTGGAGCAGCTTGGAACATTGCAAATGTGAAGGAAGGAAAAAGCACTGCTG 962
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 839 CAACTGGGGTTGGAGCAGCTTGGAACATTGCAAAAGTGAAGGAAGGAACAAGCACTGCTG 898
Query 963 TCTTTGGATTGGGTTCCGTTGGACTCGCTGTTGCTGAAGGTGCAAGAGCTAGAGGAGCTT 1022
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 TCTTTGGATTGGGTTCTGTTGGACTCGCTGTTGCTGAAGGTGCAAGAGCAAGAGGAGCTT 958
Query 1023 CTAGGATCATTGGTGTTGATGCTAATGCTTCCAAATTTGAGAAAGGTAAACTGATGGGAG 1082
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 CTAGGATCATTGGTGTTGATGCTAATGCTTCCAAATTTGAGAAAGGTAAGCTGATGGGAG 1018
Query 1083 TAACAGATTTCATAAACCCTAAAGACTTAACTAAGCCAGTACATCAGATGATACGAGAGA 1142
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 TAACAGACTTCATAAACCCAAAAGACTTAACTAAGCCAGTACATCAGATGATACGAGAAA 1078
Query 1143 TAACGGGAGGAGGCGTGGACTATAGCTTTGAATGTACAGGAAACGTTGATGTTCTTCGCG 1202
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1079 TAACGGGAGGAGGCGTGGACTATAGCTTCGAATGCACAGGAAACGTTGATGTTCTTCGCG 1138
Query 1203 AAGCCTTTTTATCCACTCACGTCGGTTGGGGATCGACAGTACTTGTTGGGATCTATCCGA 1262
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1139 AAGCCTTTTTATCCACTCACGTCGGTTGGGGATCAACGGTACTTGTGGGGATCTATCCGA 1198
Query 1263 CGCCAAGAACATTGCCTCTTCACCCAATGGAGCTTTTCGACGGCCGTAGAATCACCGGTT 1322
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||| |||||
Sbjct 1199 CGCCAAGAACATTGCCTCTTCATCCAATGGAGCTTTTCGACGGTCGTTCAATCATCGGTT 1258
Query 1323 CTGTGTTTGGTGGCTTCAAGCCCAAATCTCAGCTTCCAAATTTCGCCCAACAATGCATGA 1382
|||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1259 CTGTTTTTGGCGGTTTCAAGCCCAAATCTCAACTTCCAAATTTCGCCCAACAATGCATGA 1318
Query 1383 AAGGGGTTGTGAAATTGGAACCTTTTATTACCAATGAGCTTCCATTTGAGAAGATAAACG 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AAGGGGTTGTGAAATTGGAACCTTTTATTACCAATGAGCTTCCATTTGAGAAGATAAACG 1378
Query 1443 ATGCGTTTCAGCTGCTTCGCGATGGAAAATCTCTTCGGTGCATTCTTCAAATCTCTAAAC 1502
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1379 ATGCGTTTCAGCTGCTTCGCGATGGAAAATCTCTTCGATGCATTCTCCAAATCTCTAAA- 1437
Query 1503 TT-CTCAAGAGATGATTCTACACATTCACAAAGTTTACTACACTATATATAATTTACCCA 1561
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TTACTCAAGAGATGATTCTACACATTCACAAAGTTTACTACACTATATATAATTTACCCA 1497
Query 1562 ACAAACACTTATTTT 1576
|||||| ||||||||
Sbjct 1498 ACAAACGCTTATTTT 1512
Score = 119 bits (64), Expect = 8e-26
Identities = 78/84 (93%), Gaps = 3/84 (4%)
Strand=Plus/Plus
Query 1 AAATCTTATGTGAAGATAGTATAGTTTAAATTTTTGCATGAAATATAAAGTTAGTTGGAG 60
||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||
Sbjct 1 AAATCTTATGTGAAGATAGTA--GTTTTAATTTATGCATGAAATATAA-GTTAGTTGGAG 57
Query 61 CACAAACAAAATTTAAGATACCAT 84
|||||||||||||||| |||||||
Sbjct 58 CACAAACAAAATTTAATATACCAT 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62544182290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5