BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32790.2
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473465 jgi|Araly1|473465|fgenesh2_kg.1__3419__AT1G32790.2 2298 0.0
Ahg489908 jgi|Araly1|489908|fgenesh2_kg.6__3042__AT4G10610.1 647 0.0
> Ahg473465 jgi|Araly1|473465|fgenesh2_kg.1__3419__AT1G32790.2
Length=1688
Score = 2298 bits (1244), Expect = 0.0
Identities = 1580/1728 (91%), Gaps = 80/1728 (5%)
Strand=Plus/Plus
Query 1 ATCACCGATCCTCTGATTAATCACTCTTTAATCGtctctttattt-ctctctctctctct 59
|||||||||| |||||||||||||||||||||| ||||||||||| || | |||||||||
Sbjct 1 ATCACCGATCTTCTGATTAATCACTCTTTAATCCTCTCTTTATTTCCTTTTTCTCTCTCT 60
Query 60 tcttc-ttcttcttcttcCTCC-AGAGAGCACCTTATGCTGATTCCTCTCCTTTTCTTCC 117
|| || |||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 61 TC-TCTTTCTTCTTCTTCCTCCTCGAGAGCACCTTATGCTGATTCCTATCTTTTTCTTCC 119
Query 118 TCAACTCAT-AAACCCGATCGGCCGATTCCTTCACAATTATCCTTAAAATTTTCGATTTT 176
|||| |||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 120 TCAAATCATAAAACCCGATCGGCCGATTCCTTCTCAATTATCCTT-AAATTTCCGATTTT 178
Query 177 GATTAT-TGGGTTTCTCTCTGATCATGGCGGTTGTTGAGACTGGAGCAGCAGCTACTGCT 235
|| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 179 GA-TATCTGGGTTTCTCTCTGATCATGGCGGTTGTTGAGACTGGAGCAGCTGCTACTGCT 237
Query 236 GCTGATGCAGGAGGAGTCGTGATCCAGCCGCCGCCGTCTTCACCACCATCTTCAATGACT 295
||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 238 GCTGACGCAGGAGGAGTCGTGATCCAGCCGCCGCCTTCTTCTCCACCTTCTTCAATGACA 297
Query 296 AGTCAAGATTCCGGCGTTTCTTCCGATGATCAGAACCATCACTCTAGGATCGATCAAGTT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGTCAAGATTCCGGCGTTTCTTCCGATGATCAGAACCATCACTCTAGGATCGATCAAGTT 357
Query 356 CTCCGGCACGATCAA---------GGTCTTTACAGCAAGATCGGGTCACACGTGGCGAGA 406
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 358 CTTCGGCACGATCAAGGTGGTGTTGGTCTCTACAGCAAGATCGGGTCACACGTGGCGAGA 417
Query 407 TCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGTGATATGAGAGAGCTTCAGGAGCTT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGTGATATGAGAGAGCTTCAGGAGCTT 477
Query 467 TTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTTCCTCCTTCTCTGAATAAAC----- 521
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 478 TTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTTCCTCCTTCTCTGACTAAACAAGGA 537
Query 522 ---AA-GGAGG---TAACGGTGTTAACGGTGGTTTCTTCACCTCTGCTGGTTCCTTCTTC 574
|| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 538 GGTAACGGAGGACTTAACGGTGTTAATGGTGGTTTCTTCACTTCTGCTGGTTCCTTCTTC 597
Query 575 CGCAACAATGGCTT-TGCTGGTACCGGAAATGGCGGATACGGTAACGAAAACGGTGGTTT 633
|| ||||||||||| | ||||||| |||||||| || |||||||| ||||||||||||||
Sbjct 598 CGTAACAATGGCTTCT-CTGGTACTGGAAATGGTGGCTACGGTAATGAAAACGGTGGTTT 656
Query 634 CCGACGGAAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGGC 693
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCGTCGGAAGAAGAGCTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGGC 716
Query 694 TCAGCGAGAAGATGTTATCCGTAGAACCGTCTACGTCTCTGATCTCGATCAACAGGTCAC 753
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 TCAACGAGAAGATGTTATCCGTAGAACCGTCTATGTCTCTGATCTCGATCAACAGGTCAC 776
Query 754 TGAAGAGCAGCTTGCTGGTTTGTTTGTGAGCTGTGGACAGGTTGTTGACTGTCGCATATG 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGAAGAGCAGCTTGCTGGTTTGTTTGTGAGCTGTGGACAGGTTGTTGACTGTCGCATATG 836
Query 814 CGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGAGGGTGC 873
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 837 TGGTGACCCAAACTCAGTGCTTCGGTTTGCATTCATTGAGTTCACTGATGAAGAGGGTGC 896
Query 874 GATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATCCTGTGAAAGTTTTACC 933
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 897 AATGACTGCTCTGAATTTATCGGGGACTATGTTGGGATTTTATCCTGTGAAAGTTCTGCC 956
Query 934 ATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGGACTGAAGATGAGCG 993
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 ATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCCAGGACTGAAGATGAGCG 1016
Query 994 TGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAAGAAGGTGACTCAATCAGA 1053
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1017 TGAGATGTGTGCGAGAACTATCTACTGTACTAACATTGACAAGAAGGTGACTCAATCAGA 1076
Query 1054 CGTGAAGATCTTTTTTGAGTCCTTCTGCGGAGAGGTTTATCGCCTGAGGCTGCTTGGAGA 1113
||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 TGTGAAGATCTTCTTCGAATCCTTCTGCGGAGAGGTTTATCGCCTGAGGCTTCTTGGAGA 1136
Query 1114 TTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATGGCGGAAAGCGCAATAGC 1173
||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1137 TTACCAACACTCGACTCGAATTGCTTTTGTAGAGTTCGTAATGGCAGAAAGTGCAATAGC 1196
Query 1174 TGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACCTATAAGGTCA--T----CCTT 1227
|||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||
Sbjct 1197 GGCTCTCAACTGCAGCGGAGTTGTTCTTGGTTCTTTACCAATAAGGTCAGGTGAGTCCTT 1256
Query 1228 CAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATTGATCTTAGCTTTACA 1287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1257 CAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATTGATCTTAGCTT-ACA 1315
Query 1288 GGTTTTCACATATCTCATGTCTCCGCAATATATATATCGCTGTGTCGTCTTAAAAACAGC 1347
|||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1316 GGTTTTCACATATCTCGTGTCTC---AATATATATATCGCTGTCTCGTCTTAAAA-CAGC 1371
Query 1348 ATTACACAGACATGTAAAGATGTTTGTCTGCATCTCTCATCTCTTGTTTTCGAAA-TGTA 1406
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1372 AT-ACACAGACATGTAAAGATGTTTGTCTGCATCTCTCATCTCTTGTTTTCGAAAATGTA 1430
Query 1407 ACTCTGGGATCTGATGATGCTTCTTTCTTCTTCCTTTACCTGAGAATCTTTTGGGTaaaa 1466
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1431 ACTCTGGGATCTGATGATGCTTCTTTCTTCTTCCGTTACCTGAGAATCTTTTGGGTAAAA 1490
Query 1467 aaaa-CCTCGTAGAGAGTTTTTATTTATCTCTTAAAAAGAAAA-GAGCTTAAAACATATC 1524
|||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| |||
Sbjct 1491 AAAAACCTCGTAGAGAGTTTTTATTTATCTCTTAAGA-GAAAAAGAGCTTAAAACGTAT- 1548
Query 1525 ACACATCCAGAAGTTACTTCGTACAGTTACAATTTTACAATCGTGTGTTATTGGTTTCGA 1584
| | ||||| |||||||||||| | |||| | ||||||| | |
Sbjct 1549 -----T-------T-ACTTCTTACAGTTACAAT----C----GTGT-T-ATTGGTT-C-A 1583
Query 1585 AGAAAGTCAAA-ACTGATTTCTTTTCtttttttttG-TCGGAATAAAAAATTGATTT-AT 1641
|||||||||| | |||||||||| ||| ||| | |||||| ||||||| ||||| ||
Sbjct 1584 CGAAAGTCAAACA-TGATTTCTTTA-TTTATTTGGGGTCGGAAAAAAAAAT-GATTTTAT 1640
Query 1642 GACAAAAAGAGTTTGGATCAAATTT-GATGTTCTTAGTTTTGTCCGAA 1688
||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1641 GACAAAAAGAGTTTGAATCAAATTTTGATGTTCTTAGTTTTGTCCGAA 1688
> Ahg489908 jgi|Araly1|489908|fgenesh2_kg.6__3042__AT4G10610.1
Length=1416
Score = 647 bits (350), Expect = 0.0
Identities = 708/874 (81%), Gaps = 51/874 (6%)
Strand=Plus/Plus
Query 384 AGATCGG-GTCACACGTGGCGAGATCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGT 442
||||||| ||| |||||||||||||||||| | | ||| |||||| |||||||||
Sbjct 234 AGATCGGAGTC-CACGTGGCGAGATCCGAC-G-G-TGA------TGAGAGTTTTAAGCGT 283
Query 443 GATATGAGAGAGCTTCAGGAGCTTTTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTT 502
||||||||||||||||| ||||| || |||||||||||||| |||||| |||||||||||
Sbjct 284 GATATGAGAGAGCTTCATGAGCTCTTGTCTAAGCTTAATCCCATGGCTAAAGAGTTTGTT 343
Query 503 CCTCCTTCTCTGAATAAACAAGGAGGTAACGGTGTTAACGGTGGTTTCTTCACCTCTGCT 562
|||||||| || | ||| | || | ||| ||| |||||||||| | || || | |
Sbjct 344 CCTCCTTCACTCACTAAGCCAGTTGTTAATGGTTTTAACGGTGG--T-TT---CT-T-C- 394
Query 563 GGTTCCTTCTTCCGCAACAATGGCTTTGCTGGTACCGGAAATGGCGGATACGGTAACGAA 622
| || || || |||||||||| || | |||||||| | || |||||||
Sbjct 395 -G--CC--GTT----AATAATGGCTTTGGTGCTGCCGGAAATTTC---CCCGTTAACGAA 442
Query 623 AACGGTGGTTTCCGACGGAAGAAG-AGTTTTGG---TCAAGGGAAACGAAGGATGAATGC 678
|||||||||| || || |||||| | || || ||||||||| | || |||||| |
Sbjct 443 GACGGTGGTTTTCGCCGTAAGAAGTCG-TTCGGACAACAAGGGAAAAGGAGAATGAATCC 501
Query 679 TCGAACAAGCATGGCTCAGCGAGAAGATG-TTATCCGTAGAACCGTCTACGTCTCTGATC 737
| | ||||| |||||||||| ||||| | | || || ||||| ||||| || ||||||
Sbjct 502 TAGGACAAGTTTGGCTCAGCGTGAAGA-GATCATTCGAAGAACTGTCTATGTGTCTGATA 560
Query 738 TCGATCAACAGGTCACTGAAGAGCAGCTTGCTGGTTTGTTTGT-GAGCTGTGGACAGGTT 796
| || |||||||||||||| ||||||||||||||||||||| | | ||| ||||||||||
Sbjct 561 TTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCG-GCTTTGGACAGGTT 619
Query 797 GTTGACTGTCGCATATGCGGTGA-CCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTT 855
||||||||||| ||||| ||||| ||| ||||| || ||| ||||||| ||||| |||||
Sbjct 620 GTTGACTGTCGTATATGTGGTGATCCC-AACTCAGTACTTAGGTTTGCTTTCATTGAGTT 678
Query 856 CACTGATGAAGAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTA 915
||||||||||| |||||| | | |||| || | ||| || ||||| ||| ||||||||||
Sbjct 679 CACTGATGAAGTGGGTGCAAGGGCTGCGCTGAGTTTGTCTGGGACGATGCTGGGATTCTA 738
Query 916 TCCTGTGAAAGTTTTACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCC 975
||||||||| ||| | || || || |||||||| |||||||||||||||||||| |||||
Sbjct 739 TCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCGACATTCTTGCC 798
Query 976 TAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAA 1035
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 799 AAGGACTGAAGATGAGCGTGAGATGTGTGCGAGAACTATCTACTGCACTAACATCGACAA 858
Query 1036 GAAGGTGACTCAATCAGACGTGAAGA-TCTTTTTTGAGTCCT-TCTGCGGAGAGGTTTAT 1093
|||| | |||||| ||||| | || | ||||||||||||| | | || |||||||| ||
Sbjct 859 GAAGCTCACTCAAGCAGACATAAA-ACTCTTTTTTGAGTC-TGTGTGTGGAGAGGTGTAC 916
Query 1094 CGCCTGAGGCTGCTTGGAGATTATCAACACTCGA-CTCGTATTGCTTTTGTAGAGTTCGT 1152
|| ||||||||||| || |||||||| || || | |||| |||| |||||| ||||| ||
Sbjct 917 CGTCTGAGGCTGCTCGGCGATTATCATCA-TCCAACTCGCATTGGTTTTGTGGAGTTTGT 975
Query 1153 AATGGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACC 1212
||||| ||||| || ||||||||||| ||||||||||| || ||||||| ||||||||
Sbjct 976 CATGGCTGAAAGTGCGATAGCTGCTCTGAACTGCAGTGGCGTCCTTCTTGGCTCTTTACC 1035
Query 1213 TATAAGG-TCA-TCCTTCAAAGACGCCTGTTCGT 1244
|||||| | | ||| |||||||| |||||||||
Sbjct 1036 GATAAGGGTGAGTCCGTCAAAGACACCTGTTCGT 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65439040910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5