BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32790.2 Length=1744 Score E Sequences producing significant alignments: (Bits) Value Ahg473465 jgi|Araly1|473465|fgenesh2_kg.1__3419__AT1G32790.2 2298 0.0 Ahg489908 jgi|Araly1|489908|fgenesh2_kg.6__3042__AT4G10610.1 647 0.0 > Ahg473465 jgi|Araly1|473465|fgenesh2_kg.1__3419__AT1G32790.2 Length=1688 Score = 2298 bits (1244), Expect = 0.0 Identities = 1580/1728 (91%), Gaps = 80/1728 (5%) Strand=Plus/Plus Query 1 ATCACCGATCCTCTGATTAATCACTCTTTAATCGtctctttattt-ctctctctctctct 59 |||||||||| |||||||||||||||||||||| ||||||||||| || | ||||||||| Sbjct 1 ATCACCGATCTTCTGATTAATCACTCTTTAATCCTCTCTTTATTTCCTTTTTCTCTCTCT 60 Query 60 tcttc-ttcttcttcttcCTCC-AGAGAGCACCTTATGCTGATTCCTCTCCTTTTCTTCC 117 || || |||||||||||||||| ||||||||||||||||||||||| || ||||||||| Sbjct 61 TC-TCTTTCTTCTTCTTCCTCCTCGAGAGCACCTTATGCTGATTCCTATCTTTTTCTTCC 119 Query 118 TCAACTCAT-AAACCCGATCGGCCGATTCCTTCACAATTATCCTTAAAATTTTCGATTTT 176 |||| |||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||| Sbjct 120 TCAAATCATAAAACCCGATCGGCCGATTCCTTCTCAATTATCCTT-AAATTTCCGATTTT 178 Query 177 GATTAT-TGGGTTTCTCTCTGATCATGGCGGTTGTTGAGACTGGAGCAGCAGCTACTGCT 235 || ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 179 GA-TATCTGGGTTTCTCTCTGATCATGGCGGTTGTTGAGACTGGAGCAGCTGCTACTGCT 237 Query 236 GCTGATGCAGGAGGAGTCGTGATCCAGCCGCCGCCGTCTTCACCACCATCTTCAATGACT 295 ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 238 GCTGACGCAGGAGGAGTCGTGATCCAGCCGCCGCCTTCTTCTCCACCTTCTTCAATGACA 297 Query 296 AGTCAAGATTCCGGCGTTTCTTCCGATGATCAGAACCATCACTCTAGGATCGATCAAGTT 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 AGTCAAGATTCCGGCGTTTCTTCCGATGATCAGAACCATCACTCTAGGATCGATCAAGTT 357 Query 356 CTCCGGCACGATCAA---------GGTCTTTACAGCAAGATCGGGTCACACGTGGCGAGA 406 || |||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 358 CTTCGGCACGATCAAGGTGGTGTTGGTCTCTACAGCAAGATCGGGTCACACGTGGCGAGA 417 Query 407 TCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGTGATATGAGAGAGCTTCAGGAGCTT 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGTGATATGAGAGAGCTTCAGGAGCTT 477 Query 467 TTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTTCCTCCTTCTCTGAATAAAC----- 521 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 478 TTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTTCCTCCTTCTCTGACTAAACAAGGA 537 Query 522 ---AA-GGAGG---TAACGGTGTTAACGGTGGTTTCTTCACCTCTGCTGGTTCCTTCTTC 574 || ||||| |||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 538 GGTAACGGAGGACTTAACGGTGTTAATGGTGGTTTCTTCACTTCTGCTGGTTCCTTCTTC 597 Query 575 CGCAACAATGGCTT-TGCTGGTACCGGAAATGGCGGATACGGTAACGAAAACGGTGGTTT 633 || ||||||||||| | ||||||| |||||||| || |||||||| |||||||||||||| Sbjct 598 CGTAACAATGGCTTCT-CTGGTACTGGAAATGGTGGCTACGGTAATGAAAACGGTGGTTT 656 Query 634 CCGACGGAAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGGC 693 || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 TCGTCGGAAGAAGAGCTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGGC 716 Query 694 TCAGCGAGAAGATGTTATCCGTAGAACCGTCTACGTCTCTGATCTCGATCAACAGGTCAC 753 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 717 TCAACGAGAAGATGTTATCCGTAGAACCGTCTATGTCTCTGATCTCGATCAACAGGTCAC 776 Query 754 TGAAGAGCAGCTTGCTGGTTTGTTTGTGAGCTGTGGACAGGTTGTTGACTGTCGCATATG 813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 TGAAGAGCAGCTTGCTGGTTTGTTTGTGAGCTGTGGACAGGTTGTTGACTGTCGCATATG 836 Query 814 CGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGAGGGTGC 873 |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct 837 TGGTGACCCAAACTCAGTGCTTCGGTTTGCATTCATTGAGTTCACTGATGAAGAGGGTGC 896 Query 874 GATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATCCTGTGAAAGTTTTACC 933 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | || Sbjct 897 AATGACTGCTCTGAATTTATCGGGGACTATGTTGGGATTTTATCCTGTGAAAGTTCTGCC 956 Query 934 ATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGGACTGAAGATGAGCG 993 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 957 ATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCCAGGACTGAAGATGAGCG 1016 Query 994 TGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAAGAAGGTGACTCAATCAGA 1053 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1017 TGAGATGTGTGCGAGAACTATCTACTGTACTAACATTGACAAGAAGGTGACTCAATCAGA 1076 Query 1054 CGTGAAGATCTTTTTTGAGTCCTTCTGCGGAGAGGTTTATCGCCTGAGGCTGCTTGGAGA 1113 ||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| Sbjct 1077 TGTGAAGATCTTCTTCGAATCCTTCTGCGGAGAGGTTTATCGCCTGAGGCTTCTTGGAGA 1136 Query 1114 TTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATGGCGGAAAGCGCAATAGC 1173 ||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| Sbjct 1137 TTACCAACACTCGACTCGAATTGCTTTTGTAGAGTTCGTAATGGCAGAAAGTGCAATAGC 1196 Query 1174 TGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACCTATAAGGTCA--T----CCTT 1227 |||||||||||||| ||||||||||||||||||||||| ||||||||| | |||| Sbjct 1197 GGCTCTCAACTGCAGCGGAGTTGTTCTTGGTTCTTTACCAATAAGGTCAGGTGAGTCCTT 1256 Query 1228 CAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATTGATCTTAGCTTTACA 1287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1257 CAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATTGATCTTAGCTT-ACA 1315 Query 1288 GGTTTTCACATATCTCATGTCTCCGCAATATATATATCGCTGTGTCGTCTTAAAAACAGC 1347 |||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||| Sbjct 1316 GGTTTTCACATATCTCGTGTCTC---AATATATATATCGCTGTCTCGTCTTAAAA-CAGC 1371 Query 1348 ATTACACAGACATGTAAAGATGTTTGTCTGCATCTCTCATCTCTTGTTTTCGAAA-TGTA 1406 || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1372 AT-ACACAGACATGTAAAGATGTTTGTCTGCATCTCTCATCTCTTGTTTTCGAAAATGTA 1430 Query 1407 ACTCTGGGATCTGATGATGCTTCTTTCTTCTTCCTTTACCTGAGAATCTTTTGGGTaaaa 1466 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1431 ACTCTGGGATCTGATGATGCTTCTTTCTTCTTCCGTTACCTGAGAATCTTTTGGGTAAAA 1490 Query 1467 aaaa-CCTCGTAGAGAGTTTTTATTTATCTCTTAAAAAGAAAA-GAGCTTAAAACATATC 1524 |||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| Sbjct 1491 AAAAACCTCGTAGAGAGTTTTTATTTATCTCTTAAGA-GAAAAAGAGCTTAAAACGTAT- 1548 Query 1525 ACACATCCAGAAGTTACTTCGTACAGTTACAATTTTACAATCGTGTGTTATTGGTTTCGA 1584 | | ||||| |||||||||||| | |||| | ||||||| | | Sbjct 1549 -----T-------T-ACTTCTTACAGTTACAAT----C----GTGT-T-ATTGGTT-C-A 1583 Query 1585 AGAAAGTCAAA-ACTGATTTCTTTTCtttttttttG-TCGGAATAAAAAATTGATTT-AT 1641 |||||||||| | |||||||||| ||| ||| | |||||| ||||||| ||||| || Sbjct 1584 CGAAAGTCAAACA-TGATTTCTTTA-TTTATTTGGGGTCGGAAAAAAAAAT-GATTTTAT 1640 Query 1642 GACAAAAAGAGTTTGGATCAAATTT-GATGTTCTTAGTTTTGTCCGAA 1688 ||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 1641 GACAAAAAGAGTTTGAATCAAATTTTGATGTTCTTAGTTTTGTCCGAA 1688 > Ahg489908 jgi|Araly1|489908|fgenesh2_kg.6__3042__AT4G10610.1 Length=1416 Score = 647 bits (350), Expect = 0.0 Identities = 708/874 (81%), Gaps = 51/874 (6%) Strand=Plus/Plus Query 384 AGATCGG-GTCACACGTGGCGAGATCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGT 442 ||||||| ||| |||||||||||||||||| | | ||| |||||| ||||||||| Sbjct 234 AGATCGGAGTC-CACGTGGCGAGATCCGAC-G-G-TGA------TGAGAGTTTTAAGCGT 283 Query 443 GATATGAGAGAGCTTCAGGAGCTTTTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTT 502 ||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||||||| Sbjct 284 GATATGAGAGAGCTTCATGAGCTCTTGTCTAAGCTTAATCCCATGGCTAAAGAGTTTGTT 343 Query 503 CCTCCTTCTCTGAATAAACAAGGAGGTAACGGTGTTAACGGTGGTTTCTTCACCTCTGCT 562 |||||||| || | ||| | || | ||| ||| |||||||||| | || || | | Sbjct 344 CCTCCTTCACTCACTAAGCCAGTTGTTAATGGTTTTAACGGTGG--T-TT---CT-T-C- 394 Query 563 GGTTCCTTCTTCCGCAACAATGGCTTTGCTGGTACCGGAAATGGCGGATACGGTAACGAA 622 | || || || |||||||||| || | |||||||| | || ||||||| Sbjct 395 -G--CC--GTT----AATAATGGCTTTGGTGCTGCCGGAAATTTC---CCCGTTAACGAA 442 Query 623 AACGGTGGTTTCCGACGGAAGAAG-AGTTTTGG---TCAAGGGAAACGAAGGATGAATGC 678 |||||||||| || || |||||| | || || ||||||||| | || |||||| | Sbjct 443 GACGGTGGTTTTCGCCGTAAGAAGTCG-TTCGGACAACAAGGGAAAAGGAGAATGAATCC 501 Query 679 TCGAACAAGCATGGCTCAGCGAGAAGATG-TTATCCGTAGAACCGTCTACGTCTCTGATC 737 | | ||||| |||||||||| ||||| | | || || ||||| ||||| || |||||| Sbjct 502 TAGGACAAGTTTGGCTCAGCGTGAAGA-GATCATTCGAAGAACTGTCTATGTGTCTGATA 560 Query 738 TCGATCAACAGGTCACTGAAGAGCAGCTTGCTGGTTTGTTTGT-GAGCTGTGGACAGGTT 796 | || |||||||||||||| ||||||||||||||||||||| | | ||| |||||||||| Sbjct 561 TTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCG-GCTTTGGACAGGTT 619 Query 797 GTTGACTGTCGCATATGCGGTGA-CCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTT 855 ||||||||||| ||||| ||||| ||| ||||| || ||| ||||||| ||||| ||||| Sbjct 620 GTTGACTGTCGTATATGTGGTGATCCC-AACTCAGTACTTAGGTTTGCTTTCATTGAGTT 678 Query 856 CACTGATGAAGAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTA 915 ||||||||||| |||||| | | |||| || | ||| || ||||| ||| |||||||||| Sbjct 679 CACTGATGAAGTGGGTGCAAGGGCTGCGCTGAGTTTGTCTGGGACGATGCTGGGATTCTA 738 Query 916 TCCTGTGAAAGTTTTACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCC 975 ||||||||| ||| | || || || |||||||| |||||||||||||||||||| ||||| Sbjct 739 TCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCGACATTCTTGCC 798 Query 976 TAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAA 1035 ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct 799 AAGGACTGAAGATGAGCGTGAGATGTGTGCGAGAACTATCTACTGCACTAACATCGACAA 858 Query 1036 GAAGGTGACTCAATCAGACGTGAAGA-TCTTTTTTGAGTCCT-TCTGCGGAGAGGTTTAT 1093 |||| | |||||| ||||| | || | ||||||||||||| | | || |||||||| || Sbjct 859 GAAGCTCACTCAAGCAGACATAAA-ACTCTTTTTTGAGTC-TGTGTGTGGAGAGGTGTAC 916 Query 1094 CGCCTGAGGCTGCTTGGAGATTATCAACACTCGA-CTCGTATTGCTTTTGTAGAGTTCGT 1152 || ||||||||||| || |||||||| || || | |||| |||| |||||| ||||| || Sbjct 917 CGTCTGAGGCTGCTCGGCGATTATCATCA-TCCAACTCGCATTGGTTTTGTGGAGTTTGT 975 Query 1153 AATGGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACC 1212 ||||| ||||| || ||||||||||| ||||||||||| || ||||||| |||||||| Sbjct 976 CATGGCTGAAAGTGCGATAGCTGCTCTGAACTGCAGTGGCGTCCTTCTTGGCTCTTTACC 1035 Query 1213 TATAAGG-TCA-TCCTTCAAAGACGCCTGTTCGT 1244 |||||| | | ||| |||||||| ||||||||| Sbjct 1036 GATAAGGGTGAGTCCGTCAAAGACACCTGTTCGT 1069 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65439040910 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5