BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32810.2
Length=3207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473467 jgi|Araly1|473467|fgenesh2_kg.1__3421__AT1G32810.2 2333 0.0
> Ahg473467 jgi|Araly1|473467|fgenesh2_kg.1__3421__AT1G32810.2
Length=3225
Score = 2333 bits (1263), Expect = 0.0
Identities = 1391/1451 (96%), Gaps = 15/1451 (1%)
Strand=Plus/Plus
Query 1766 GCTTGAAGCAACAACCAGGTGATGATGATAATGATGCTAATACCAATGATGAGGACTGTG 1825
||| ||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 1781 GCTCGAAGCAACAACCA--TG-TGATGATGCTGATGCTAATACCAATGATGAGGACTGTG 1837
Query 1826 TTTCCAGTGATGTGATCCGAGAGAGAGATGGGGATGATGAACCTTCAGAGAAAGCTCCGA 1885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 TTTCCAGTGATGTGATCCGAGAGAGAGATGGGGATGATGAACCTTCAGAGAAAGCTCCGA 1897
Query 1886 AACATCCTAAATTTTCTATTACCTCTAAGAAATCGATGCAGCATAACCGTACTTCCCATT 1945
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1898 AACATCCTAAATTTTCTATTACCTCTAAGAAATCGATGCAGCATAATCGTACTTCCCATT 1957
Query 1946 CTTCAGTTTCCAAGACAAGAGAGTCTTCCTCTTCTTCAAAGACATCTTCAGCAACTCGGA 2005
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1958 CTTCAGTTTCCAAGACTAGAGAGTCTTCCTCTGCTTCAAAGACATCTTCAGCAGCTCGGA 2017
Query 2006 TTAATGGTGGTTCTTCTGAGGCTCCTAGTAAACATTCGCTTTCAGGAACCTTCCCGAAAA 2065
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2018 TTAACGGTGGTTCTTCCGAGGCTCCTAGTAAACATTCGCTTTCAGGGACCTTCCCGAAAA 2077
Query 2066 ATGAAAAGCCTGGACAATCAATATTCCAGTCATCAACTAAGAACCCTGTGCAGTCTATAA 2125
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2078 ATGAAAAGCCTGGACAATCAATATTCCAGTCATCAACTAAGAATCCTGTGCAGTCTATAA 2137
Query 2126 TTTCCCTTGCTCCAAATCTGAGCGATGAAGAGCTTGCGTTAAGACTGCACCATCAACTCA 2185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2138 TTTCCCTTGCTCCAAATCTGAGCGATGAAGAGCTTGCGTTAAGACTGCACCATCAACTCA 2197
Query 2186 ATAGTTCTCCTCGAGTTCCTCGTGTCCCCCGCATGAGACAGCCTGGTAGCTTGCCCCTGT 2245
|||| ||||| |||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 2198 ATAGCTCTCCGCGAGTTCCTCGTGTACCACGCCTGAGACAGCCTGGTAGCTTGCCCCTGT 2257
Query 2246 CTCCAACCGCCCCTAGTTTTAAGCGCACTTCTAGTTCTGGTAGCAAGGATCACACAACGT 2305
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2258 CTCCAACCGCTCCTAGTTTTAAGCGCACTTCTAGTTCTGGTAGCAAGGATCACACAACGT 2317
Query 2306 TTTCCAGAAGGAAAAACAAGGATACATCCAAAGAAGGTTACTGCAATTTACGTGATGATG 2365
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2318 TTTCCAGAAGGAAAAACAAGGATGCATCCAAAGAAGGTTACCGCAATTTACGTGATGATG 2377
Query 2366 ATAGATGCAGTACAAGGAGTGCCAAAAATCGTCGGTCTCCTGATAGGAGGACACAACAAG 2425
||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 2378 ATAGATGCAGTACAAGGAGTGCCAAAACGCGTCGCTCTCCTGATAGGAGAACACAACAAG 2437
Query 2426 ACAGTGGAAGCAGAGGAGGGAGTTTGTGTTCCAAAGGGGAAGAAAATGAAACCACCAAAA 2485
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2438 ACAGTGGAAGCAGAGGGGGGAGTTTGTGTTCCAAAGGGGAAGAAAATGAAACCCCCAAAA 2497
Query 2486 CCTCTTCTTATTCCTCTCGGAAAGTACTTCTCCCGCCAAACTCGACTACAAGCACAAGCA 2545
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2498 CCTCTTCTTACTCCTCTCGGAAAGTACTTCTCCCGCCAAACTCGGCTACAAGCACAAGCA 2557
Query 2546 GCGGACCATGTTCATCCAGCGAGTTGAATGAGCATAATAAGCCTTCTCCACACAGTTCCC 2605
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2558 GCGGACCGTGTTCATCCAGCGAGTTGAATGAGCATAATAAGCCTTCTCCACACAGTTCCC 2617
Query 2606 CTAGGAATAATGGTACTCCAGTACATCGAACTTTGCCAGGATTAATCAATGAAATCATGA 2665
||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 2618 CTAGGAATAATGGCACTGCAGTACATCGAACTTTGCCAGGCTTAATCAATGAAATCATGA 2677
Query 2666 ACAAAGGCAAGAGGATGGCATATGAGGAGCTCTGTAACGCAGTCTTGCCGCACTGGCCTC 2725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2678 GCAAAGGCAAGAGGATGGCATATGAGGAGCTCTGTAACGCAGTCTTGCCGCACTGGCCTC 2737
Query 2726 ACTTGAGGAAACACAACGGAGAACGATATGCATATTCAAGCCATTCACAGGCTGTTCTTG 2785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2738 ACTTGAGGAAACACAACGGAGAACGATATGCATATTCAAGCCATTCACAGGCTGTTCTTG 2797
Query 2786 ATTGCCTGAGGAATAGGCATGAGTGGGCTCGTCTGGTTGATCGTGGCCCCAAGACTAATT 2845
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2798 ATTGCCTGAGGAATAGGCATGAGTGGGCTCGTCTGGTTGATCGTGGCCCCAAGACTAACT 2857
Query 2846 CCGGGAAAAAGAAACGGAAGCTCGATGCAGCAGAGGAGGATTCAGATGAGAACGAAAGCA 2905
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2858 CAGGGAAAAAGAAACGGAAGCTCGATGCAGCAGAGGAGGACTCAGATGAGAACGAAAGCA 2917
Query 2906 GTAAGGGAGGAAGGAAGCGACTGCATCAACATCACTCTCAAGGAGAAGAGTTTCCCAAAG 2965
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2918 GTAAGGGAGGAAGGAAGAGACTGCATCAACATCACTCTCAAGGAGAAGAATTTCCCAAAG 2977
Query 2966 GAAAAAGGAAAGCAAGAAAACGGAGAAGGCTTTCTATTCaaagaaaaggcattaaagtgt 3025
||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 2978 GAAAAAGGAAAGCAAGAAAACGGAGAAGGCTCTCTCTCCAAAGAAAAGGCATTAAAGTGT 3037
Query 3026 tgagaaagaagagaaac---gaagaaga--agtta-gcgaagaagacgaggaagaTGCGT 3079
||||||| ||||||||| |||||||| || || |||||||||||||||||| |||||
Sbjct 3038 TGAGAAAAAAGAGAAACCAAGAAGAAGACGAGGTAAGCGAAGAAGACGAGGAAGGTGCGT 3097
Query 3080 TCTCGGACACAAGCGAGGAGAGCATCTTCTGCGATgaagaagaagaagaagaagaagaGG 3139
||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 3098 TCTCGGACACAAGTGAGGAGAGCATCTTCTGCGA--A-GAAGAAGAAGAAGAAGAAGAGG 3154
Query 3140 GCCACACT---GCTACTGGTACTGGACAAGTCTCTGCTAGTAGCTCTGAGGAAGCTCAAG 3196
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3155 GCCACACTACTGCTGCTGGTACTGGACAAGTCTCTGCTAGTAGCTCTGAGGAAGCTCAAG 3214
Query 3197 CCACTTCATGA 3207
|||||||||||
Sbjct 3215 CCACTTCATGA 3225
Score = 1219 bits (660), Expect = 0.0
Identities = 876/974 (90%), Gaps = 40/974 (4%)
Strand=Plus/Plus
Query 1 ATGAAAGGAAGATCGTATCGGTTTTCAAGTACGGATCCTCATGAGGATTGGGTTGATGGA 60
|||| ||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |
Sbjct 1 ATGAGAGGAAGATCGTATCGGTTTTCGAGTACGGATCCTCATGAGGATTGGGGTAATGAA 60
Query 61 CTTTGGACTGTGGATTGTGTTTGTGGTGTGAATGACGATGATGGAACAGAGATGGTTAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTGGACTGTGGATTGTGTTTGTGGTGTGAATGACGATGATGGAACAGAGATGGTTAAA 120
Query 121 TGTGATGATTGTGGTGTTTGGGTTCATACTCGTTGTTCTCGTTTTGTTGAAGGACAAGAG 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 121 TGTGATGATTGTGGTGTTTGGGTTCATACTCGTTGTTCTCGTTTTGTTAAAGAAGAAGAG 180
Query 181 CTTTTTACTTGTCATAAGTGTAAGAGCAAGAACAATGTTAATGATAGTGAAGAGACTGAG 240
|||||||||||| ||||||||||||||||||||||| |||| ||||| || |||||||||
Sbjct 181 CTTTTTACTTGTGATAAGTGTAAGAGCAAGAACAATATTAACGATAGCGAGGAGACTGAG 240
Query 241 GTTGCTCAGTTGTTGGTTGAATTGCCTACTAAGACTTTGGGAATGGAGAATTCGTGTACT 300
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 241 GTTGCTCAGTTGTTGGTTGAATTGCCTACTAAAACCTTGAGAATGGAGAATTCGTGTACT 300
Query 301 CGGAGTGTACCTTTC-AAGCGTCCTTTTAGGTTATGGACTGAGATCCC-AGCTGAAGAAA 358
||| |||| || | |||||||||||||||||||||||||||||||| | | || ||||
Sbjct 301 CGGGGTGTTCCGC-CGAAGCGTCCTTTTAGGTTATGGACTGAGATCCCGACC-GAGGAAA 358
Query 359 AGGTTCATGTGCAAGGAATCCCGGGTGGGGATCCGTCTCTTTTTGATGGATTGTCGTCGG 418
|||||||||| |||||||||||||||||||||||| ||||||| || || ||||||||||
Sbjct 359 AGGTTCATGTTCAAGGAATCCCGGGTGGGGATCCGGCTCTTTTCGAAGGGTTGTCGTCGG 418
Query 419 TTTTCTCCCGGGAGCTGTGGAAGTGTAGTGGTTATGTGCCTAAGAAGTTTAACCTTAAGT 478
||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 419 TTTTCTCCCGGGAGCTGTGGAAGTGTACTGGTTATGTGCCGAAGAAGTTTAACTTTAAGT 478
Query 479 ATAGAGAGTTTCCTTGCTGGGATGAGCAAGAGAAGGATGA-A--GA------CGGTGCAG 529
||||||||||||| |||||||||||||||||||||||||| | || ||||||||
Sbjct 479 ATAGAGAGTTTCCATGCTGGGATGAGCAAGAGAAGGATGAGATTGAAAATGACGGTGCAG 538
Query 530 GGGTTTTGTTTTCGATGTCGAAGGAGAATGTGATTGCTGCTCCTGTTAGTACTTTGGTTG 589
||||||||||||| ||||| ||||| |||||||||||||||||||| ||| |||||||||
Sbjct 539 GGGTTTTGTTTTCTATGTCCAAGGAAAATGTGATTGCTGCTCCTGTGAGTGCTTTGGTTG 598
Query 590 GAATGAGGAGGAGTCTTGATGGTAAAGGAGGAACCAATGACGTGAAGCTTGGTTGTG-A- 647
|||||| || || || |||||||||||| | ||||||| ||||||||||||||| |
Sbjct 599 GAATGA--AG-AGCCTAGATGGTAAAGGA--A-CCAATGATTTGAAGCTTGGTTGTGCAA 652
Query 648 ----CT-C--T-G--G----T--G---AAACGGATAGAAAACATTCTCAGGGTGCTATTA 688
| | | | | | | |||| ||||||||||||||||||||||| || |
Sbjct 653 AAGACGGCAATAGTTGGGACTCTGGCGAAACAGATAGAAAACATTCTCAGGGTGCCATGA 712
Query 689 AGAAGGATAAGAGGTTGCTTCGTCCTATGATGACGAATAAACGAAGAAAAGAATTGTTCG 748
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 713 AGAAGAATAAGAGGTTGATTCGTCCTATGATCACGAATAAACGAAGAAAAGAATTGTTTG 772
Query 749 GTGCTTCAAAAGAGCGGATGAAGAAGAAGGTTGAAGTTGTAGACAAAGAAGAAGATGATA 808
| |||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||
Sbjct 773 GAGCTTCAAAAGAGCGGATGAAGAAGAAGGCTGAAGGTGCAGAAAAAGAAGAAGATGATA 832
Query 809 AGAAAGGTTTTGTCGGTAAAACAGGAAATCGACCTGCCAGTGATGCTAAACCATCAGAAT 868
||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 833 AGAAAGGGTTTGTCGGTAAAACAGGAATTCGACCTGCCAGTGATTCTAAACCATCAGAAT 892
Query 869 CTCGTAAGGACATAGAAGCAGAAGGTTTTACTAGCGACGTTGGGATCACGAAGAGTGTAA 928
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 893 CTCGTAAGGACATAGAAGCAGAAGGTTTTACAAGCGACATTGGGATCACGAAGAGTGTAA 952
Query 929 AGGCCAAGAAAGCT 942
||||||||||||||
Sbjct 953 AGGCCAAGAAAGCT 966
Score = 1122 bits (607), Expect = 0.0
Identities = 730/789 (93%), Gaps = 9/789 (1%)
Strand=Plus/Plus
Query 942 TGCTCTGGAAACTGGCGGTGATGAATCTGGTAATACAGAAATTGGTGTTGAATGCTCCAG 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TGCTCTGGAAACTGGCGGTGATGAATCTGGTAATACAGAAATTGGTGTTGAATGCTCCAG 1055
Query 1002 AGAACAGAATCTTTCTGACGTTCATGCTAATGGTACTGGAAAACAGGAAGAGAAAGCTGG 1061
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 1056 AGAACAGAATCTTTCTGACGTTCATGCCAATGGTGCGGGAAAACAGGAAGAGAAAGCTGG 1115
Query 1062 TCATCATTTCCGAATTGTGCTTAAAAGCTCTGCAACTACTGATCCTTCTGTCCTCGGAGG 1121
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1116 TCATCATTTTCGAATTGTGCTTAAGAGCTCTGCATCTACTGATCCTTCTGTCCTCGGAGG 1175
Query 1122 AAGAGATGTTCCACACAATGAGGCTAATAAGGAGGAGGAGAGACAAGGCACAATAGCTGA 1181
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1176 AAAAGATGTTCCACACAATGAGGCTAATAAGGAGGAGGAGAGACAAGGCACCGTAGCTGA 1235
Query 1182 TGCTCCAGAAGATAATGCAGCTGATTCTTCTGAAAGTTCCCAGAAGCCTTCTCTTGGTTC 1241
| ||| ||||||||||||| |||||||||||||||||||| ||||||||||| || |||
Sbjct 1236 CGTTCCGGAAGATAATGCAGTTGATTCTTCTGAAAGTTCCCGGAAGCCTTCTCCTGTTTC 1295
Query 1242 CATGGTTGGTAAAACACGAGAAGGTGAAGAGAAAAATTGTGATGATGTTAGTAGGAAAAT 1301
|| |||||||||||| |||||||||||||| ||||| | | | ||| ||||| |
Sbjct 1296 CACGGTTGGTAAAACGCGAGAAGGTGAAGA-AAAAA---T-A-CA---CAGTGGGAAAGT 1346
Query 1302 CAGTACGAGGAAGAACAAATTCCAAAAAGAAACAGCTGATACTGGTGCCAGTGGAGCTCT 1361
|||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1347 CAGTTCTAGAAAGAACAAATTCCAAAAAGAAACAGCTGATACTGGTGCCAGTGGAGCTGT 1406
Query 1362 AGGCCTGCAGACTCTAGACCATATGGATTCTAAAGTGTCAGGGAGCTCTGCGTCTCAGAT 1421
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1407 AGGCCTGCAGACTCTAGACCCTATGGATTCTAAAGTGTCAGGGAGCTCTGTATCTCAGAT 1466
Query 1422 CTCTGGAGGTTCTGAACTTAACAAAATGACACCGAGCAGTTCACTTCCTGATGATCACAA 1481
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1467 CTCTGGAGCTTCTGAACTTAACAAAATGACACCGGGCAGTTCACTTCCTGATGATCACAA 1526
Query 1482 ACCGCAGTCTGTTGAAATGGTATCAGAGGGAATAAGTAGTGGCAATAGAGACAGAGCTAT 1541
||||||| ||||||| |||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 1527 ACCGCAGCCTGTTGATGTGGTATCAGAAGGAATAAGTAGTGGCAATAGAAACAAAGCTAT 1586
Query 1542 CGAATTAAAACGAGAACTGGTGGTTTCAGAAACTGAAAAAGATATTCAGGAAACAAAGCC 1601
|||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||
Sbjct 1587 GGAATTAAAACGAGAACTGGTGGTTTCGGAAGCAGAAAAAGATATTCTGGAAACAAAGCC 1646
Query 1602 TGGATCTGTTTTATTTCAAGAGCCATCAAAGCCTTGCAGACCTATTCCGCATACGGTTTC 1661
|| ||||| |||||||||||| ||||||||||||| |||||||||||| || || |||||
Sbjct 1647 TGAATCTGGTTTATTTCAAGAACCATCAAAGCCTTTCAGACCTATTCCCCACACTGTTTC 1706
Query 1662 AGGAAATGGTAGGCCTAAGATGGTAGTATGCATTGGAAAAACATCGTCAAGTTCAGCCAC 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 AGGAAATGGTAGGCCTAAGATGGTAGTATGCATTGGAAAAACATCGTCAAGTTCAGCCAC 1766
Query 1722 TGAAAAGTC 1730
||||||||
Sbjct 1767 AGAAAAGTC 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121165069345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5