BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32850.1
Length=2679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473468 jgi|Araly1|473468|fgenesh2_kg.1__3422__AT1G32850.1 3794 0.0
> Ahg473468 jgi|Araly1|473468|fgenesh2_kg.1__3422__AT1G32850.1
Length=2685
Score = 3794 bits (2054), Expect = 0.0
Identities = 2492/2699 (92%), Gaps = 47/2699 (2%)
Strand=Plus/Plus
Query 9 AATCACTGATTCTGAATCCATCGGAGTTTGTGAATCCTCC-TATACTCCTGAGGAAGAGA 67
|||| ||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||
Sbjct 6 AATCCCTGATTCTGAATCCACCGGAGTTTGTGAA-GTTCCTTATTCTCCTGAGGAAGAGA 64
Query 68 GACGTATTGTCACCGAGCTTAATAACGAAGCCGAGGCTGATTTGAAAGAGGGAAACTTGT 127
|||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 65 GACGTATTGTGACGGAGCTTAATAGCGAAGCAGAGGCTGATTTGAAAGAGGGAAACTTGT 124
Query 128 ATTTCGTTATCTCAAACAGGTGGTATACAAGATGGCAGAGGTTTGTTGGGCTACTAACAG 187
||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 125 ATTTCGTTATCTCAAACAGGTGGTATACAAGGTGGCAGAGATTTGTTGGTCTACTAAC-- 182
Query 188 AAGAATTTCGTAGTGGAGAGCCTTCAGAAGTTACCCGACCTGGTCCAATTGATAATCATG 247
|| | | |||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 183 -AG-A------A---GAGA--CTTCAGAAGTTACCAGGCCTGGTCCAATTGATAATCATG 229
Query 248 ATATAATTGATAGTGAAAGTGATGCTAGTGATCCGCAACTTCGTATGATGCTGGAGGAAG 307
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 230 ATATAATTGATAGTGAAAGTGATGCTAGTGATCCGCAGCTTCGTATGATGCTGGAGGAAG 289
Query 308 GTGTCGACTATACTCTAGTTCAACAAGAAGTTTGGAGAAAACTCGTTAAATGGTATAAAG 367
| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||
Sbjct 290 GCGTCGACTATACTCTAGTTCCTCAACAAGTTTGGAGAAAACTCGTTGAATGGTATAAAG 349
Query 368 GAGGTCCTCCAGTACCGAGAAAGTTGATATCTCAAGGGTTTTACACTAAGAGCTTTAGTG 427
||||||||||| |||| || |||||||| |||||||| ||||||||||||||||||||||
Sbjct 350 GAGGTCCTCCATTACCAAGGAAGTTGATCTCTCAAGGATTTTACACTAAGAGCTTTAGTG 409
Query 428 TGGAGGTTTACCTACTGTGTCTTACCTTGACAGACAGTAGAGACGAAAGCACTACCATCA 487
|||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 410 TGGAGGTTTACCCACTCTGTCTTAAGTTGACAGATAGTAGAGACGAAAGCACTACCATCA 469
Query 488 TAAGGTTGAGCAAACAGGCTTCTATAGGTCAACTTTATGAGATGGTTTGTGCTGGAAAAG 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 470 TAAGGTTGAGCAAACAGGCTTCTATAGGTCAACTTTATGAGATGGTTTGTGCTGGAAGAG 529
Query 548 GGGTAGCAAAAGAAAAGGCTCGCATATGGGATTACTTTGAGAAAAAGAAAAGCGTACTCT 607
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 530 GGGTAGCAAAAGAAAAGGCTCGCATCTGGGATTACTTTGAGAAGAAGAAAAGTGTACTCT 589
Query 608 TGGATCCTTCATCTGAACAAAGTGTGGAGGAAGCGGGCCTTCAATTCAACCAAGATATTC 667
||||||||||||||||| |||| ||||||||| ||||||||||| | ||||| |||||||
Sbjct 590 TGGATCCTTCATCTGAAAAAAGCGTGGAGGAATCGGGCCTTCAACTGAACCAGGATATTC 649
Query 668 TTCTTGAGGTTGATGGATCTGCATCTTCTCAATTTGTCATGAGCTTGGCTGAAAATGAAT 727
||||||| |||||||| |||||||||||||||| || |||||||||||||| ||||||||
Sbjct 650 TTCTTGATGTTGATGGTTCTGCATCTTCTCAATATGACATGAGCTTGGCTGGAAATGAAT 709
Query 728 TAGCTATGGTACCTCTAGAGCCTATGAGGTCAGATGCTATGGATATTGTGCGTGGTGGAG 787
||||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
Sbjct 710 TAGCTCTGGTACCTCTAGACCCTACGAGCTCAGATGCTATGGATATTGTGCGTGGTGGGG 769
Query 788 GGACCTTATCTAATGGTCACTCCAACGGTTTTAAGTTTAGCTTCTTTGGGAGAAACACTT 847
||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 770 GGAACTTAGCTAATGGTCACTCCAACGGTTCCAAGTTTAGCCTCTTTGGGAGAAACGCTT 829
Query 848 TCAAAGATGATGTTTCTTCAAGGACTTTTGGGAAAGGAGAGAAGAGAGGTTTAGGAGGAT 907
|| |||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 830 TCGAAGATGATATTTCTTCGAGTACTTTTGGGAAAGGAGAGAGGAGAGGTTTAGGAGGAT 889
Query 908 TGCAAAATTTGGGAAATACATGCTTCATGAATAGTACTCTTCAGTGTTTGGCTCATACAC 967
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 890 TGCAGAATTTGGGAAATACATGCTTCATGAATAGTACTCTTCAGTGTTTGGCCCATACAC 949
Query 968 CCCCTATTGTTGAATATTTTCTACAAGATTACCGCTCCGACATAAATGCAAAGAATCCTT 1027
|||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||
Sbjct 950 CCCCTATTGTTGAATATTTTCTGCAAGATTACAGATCCGACATAAATGCAGAGAATCCTT 1009
Query 1028 TGGGAATGCGTGGTGAGCTTGCAATTGCATTTGGTGAACTTTTGAGGAAATTGTGGTCAT 1087
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1010 TGGGAATGCGTGGTGAGCTTGCAATTGCATTTGGTGAGCTGTTGAGGAAATTGTGGTCAT 1069
Query 1088 CTGGACAAAATACAGTTGCGCCGCGCGCTTTTAAGACAAAATTGGCTCGATTTGCTCCAC 1147
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1070 CTGGACAGAATACAGTTGCTCCGCGTGCTTTTAAGACAAAATTGGCTCGATTTGCTCCAC 1129
Query 1148 AATTTAGTGGTTATAATCAGCATGATTCTCAAGAAATGCTTGCTTTCTTATTGGATGGGC 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AATTTAGTGGTTATAATCAGCATGATTCTCAAGAAATGCTTGCTTTCTTATTGGATGGGC 1189
Query 1208 TTCATGAAGACTTGAACAAGGTAAAACGAAAACCTTATATTGAAGCTAAAGATTCAGATG 1267
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TACATGAAGACTTGAACAAGGTAAAACGAAAACCTTATATTGAAGCTAAAGATTCAGATG 1249
Query 1268 GTCGTCCAGATGATGAAGTAGCCGAAGAAAAGTGGAAATACCATAAGGCCCGAAATGACT 1327
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 1250 GTCGTCCAGATGATGAAGTAGCTGAAGAAAAATGGAAATACCACAAGGCCCGAAATGACT 1309
Query 1328 CTGTGATAGTTGACGTCTTCCAAGGACAATACAAGTCAACATTGGTGTGTCCAGATTGTG 1387
| |||||||||||||||| |||||||||||||||||||||| |||| || ||||||||||
Sbjct 1310 CAGTGATAGTTGACGTCTGCCAAGGACAATACAAGTCAACACTGGTCTGCCCAGATTGTG 1369
Query 1388 GAAAAATCTCAATCACATTTGACCCCTTCATGTACTTATCTTTGCCGTTGCCATCAAGTC 1447
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1370 GAAAAATCTCAATCACCTTTGATCCCTTCATGTACTTATCTTTGCCGTTGCCATCGAGTC 1429
Query 1448 GCACTCGATCAATGACTGTTACAGTGTTTTATGGCGATGGAAGTCACCTTCCGATGCCAT 1507
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1430 GCACTCGATCAATGACTGTTACAGTGTTTTATGGCGATGGAAGCCATCTTCCGATGCCAT 1489
Query 1508 ACACTGTAACAGTTCCTAAAGACGGTTCTTGTAGAGATCTCAGTAATGCATTAGGCACTG 1567
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1490 ACACTGTAACAGTTCCTAAAGATGGTTCTTGTAGAGACCTCAGTAATGCATTAGGCACTG 1549
Query 1568 CTTGCTGCTTGGACAATGACGAAAGCCTTTTACTTGCAGAGGTGTATGACCACAAGGTCT 1627
|||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1550 CTTGCTGCTTAAACAATGACGAAAGCCTTTTACTCGCAGAGGTATATGACCACAAGGTCT 1609
Query 1628 TTAAGTATTATGAAAATCCCCGGGAGTTGCTGAATGGGATAAAAGACAATGAACATATTG 1687
|||| |||| ||| ||||||| ||||||| |||||| ||||||||||||||||| |||||
Sbjct 1610 TTAAATATTTTGAGAATCCCCTGGAGTTGTTGAATGCGATAAAAGACAATGAACGTATTG 1669
Query 1688 TGGCATATCGGTTCAAGCAGATGCACAAAGGACCAGGAAAAGTCAAACTAGAAATTCTTC 1747
|||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1670 TGGCATATCGGTTCAACCAGATGCACAAAGGTTTAGGAAAAGTCAAACTTGAAATTCTTC 1729
Query 1748 ATGGGGAGCAGGAAAAGTCT-A--GTGACAGGGGCCCAAAG-TGTTTTGGAACTCCCCTA 1803
|||||||||||||||||||| | ||| ||| ||||||||| | |||||||||||||||
Sbjct 1730 ATGGGGAGCAGGAAAAGTCTGATAGTGGCAGAGGCCCAAAGCT-TTTTGGAACTCCCCTT 1788
Query 1804 GTCACTTATATCAACAAAGAACCACTTAGTGGAACAGACATTGCTACTAGCATCT-CTGG 1862
||||||||||||||||||||||||||||||||| | ||||||||| | ||||||| | ||
Sbjct 1789 GTCACTTATATCAACAAAGAACCACTTAGTGGATCTGACATTGCTGCAAGCATCTTC-GG 1847
Query 1863 ATTGTTGTCACCTCTACGCCGGGTTCATATGTCATGTGTAGTTAATAGTGGAAACGAGAA 1922
|||| |||||||||||||||| ||||||||||||| ||||| |||||| |||||||||
Sbjct 1848 ATTGCTGTCACCTCTACGCCGAGTTCATATGTCATCCATAGTTCATAGTGAAAACGAGAA 1907
Query 1923 TGGCCACGTTCCAGATG----A-AT----CATCCAGAAGTATATTATCTAGAGACACGGA 1973
| ||||||||||||||| | || ||||||||||| || |||||||||||| ||
Sbjct 1908 TAGCCACGTTCCAGATGTTGCAGATGAATCATCCAGAAGTGCATCATCTAGAGACACTGA 1967
Query 1974 AACAGAGGATAATG-A-T--A-GA--GA-A-TTATCCTTGAGCCTCTTACGAGATTACTA 2024
|||||| ||||||| | | | || || | ||||| || |||||||| | ||||||| |
Sbjct 1968 AACAGAAGATAATGCAGTTGATGATAGAGAATTATCTTTCAGCCTCTTGCCAGATTACCA 2027
Query 2025 TTCTTTCAATCTCCAGCCACTTGAGTCCGATTCCGTTGTGAATCCTGGTAGTGTTACAAA 2084
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2028 TTCTTTCAGTCTCCAGCCACTTGAGTCCGATTCTGTTGTGAATCCTGGTAGTGTTACAAA 2087
Query 2085 GGTTTTAGTCAAGTGGAACGAGAAAGAGCATGAGAAATATGACTCAAGCTACTTGAATGA 2144
|||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2088 GGTTCTAGTCAAGTGGAATGAGAAAGAGCATGAGAAATATGACTCCAGCTACTTGAATGA 2147
Query 2145 TCTACCTAAGGTTCATAAA--AA-TGTCTTGGCAAAGAAGACAATGCAAGAGGGAATATC 2201
||||||| ||||||||||| || | ||||||||||||||| || |||||||| ||||||
Sbjct 2148 TCTACCTGAGGTTCATAAATCAAGTTTCTTGGCAAAGAAGATAAGGCAAGAGGAAATATC 2207
Query 2202 TTTGTTTTCATGCTTGGAAGCCTTTCTAGCAGAAGAGCCTCTAGGACCAGATGACATGTG 2261
||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| |||||
Sbjct 2208 TTTGTTTTCATGCTTGGAAGCTTTTCTAGCGGAAGAGCCTTTAGGACCCGATGATATGTG 2267
Query 2262 GTATTGTCCTGGTTGCAAAGAACATAGACAAGCGAACAAGAAGCTAGACTTGTGGAAGTT 2321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 GTATTGTCCTGGTTGCAAAGAACATAGACAAGCGAACAAGAAGCTAGACTTGTGGAAGTT 2327
Query 2322 GCCAGATATTCTTGTGTTCCACCTGAAACGGTTCACGTATAGCAGATATTTCAAGAATAA 2381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 GCCAGATATTCTTGTGTTCCACCTGAAACGGTTCACGTATAGCAGATATTTCAAGAATAA 2387
Query 2382 GATTGATACGTTAGTGAACTTCCATATTCACGATCTAGATCTTA-GCAAGTACGTAAAGA 2440
||||||||| |||||||| |||| ||||| | ||||||| ||| ||||||| |||| ||
Sbjct 2388 GATTGATACATTAGTGAATTTCCCGATTCATGGTCTAGAT-TTAAGCAAGTATGTAACGA 2446
Query 2441 ACGAAGACGGTCAGTCATATCTTTACGAGCTGTATGCGATTAGCAATCATTATGGTGGCC 2500
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2447 ACAAAGACGGTCAGTCATATCTTTACGAGCTGTATGCCATTAGCAATCATTATGGTGGCC 2506
Query 2501 TTGGAGGTGGTCACTACACTGCTTACGCTAAGTTGATGGATGAGACCAAATGGTATAATT 2560
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 2507 TGGGAGGTGGTCACTACACTGCTTACGCTAAGTTGATGGATGAGAACAAATGGTATGATT 2566
Query 2561 TTGATGACAGCCGTGTTTCAGCTGTAAATGAATCCGAGATCAAGACTTCGGCTGCTTACG 2620
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 2567 TTGATGACAGCCGTGTTTCAGCTGTAAATGAATACGAGATCAAGACTCCGGCTGCTTACG 2626
Query 2621 TTTTGTTCTATCAAAGAGTGAAAAGTGATTCAGAGACATCGGATATGAAAATGGATTAG 2679
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2627 TTTTGTTCTATCAAAGAGTGAAAAGTGAATCAGAGACATCGGATATGAAAATGGATTAG 2685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101053419985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5